Gene annotation
Transcriptome id Sobic.004G281400.1
Synonym Sb04g031790
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5Y0Y2
Pfam PF13639
Panther DB PTHR14155
NCBI CDD -
KEGG Orthology K16281; RING-H2 zinc finger protein RHA1
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G61460 : brassinosteroid-responsive RING-H2
RAP-DB (Rice) LOC_Os04g49000.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a010089 , Zm00025a032327 , Zm00025a050294 , Zm00025a056729 , Zm00025a021522
Brachypodium KQK20014 , KQJ84181 , PNT69238
Barley HORVU0Hr1G005330.5 , HORVU0Hr1G005330.4 , HORVU0Hr1G005330.2 , HORVU6Hr1G066050.4 , HORVU6Hr1G066050.3 , HORVU6Hr1G066050.1 , HORVU7Hr1G002750.1 , HORVU6Hr1G066050.2
Wheat -
Populus -


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cDNA sequences
Sobic.004G281400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G174300 senescence-related tran- scription factor gene(PubMedID : 26317421)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY74, expressed -
2 Sobic.002G323900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PRAS-rich protein, putative, expressed -
3 Sobic.009G010400 zinc finger, RING-type, putative, expressed -
4 Sobic.006G259000 AP2 domain containing protein, expressed K09286: EREBP-like factor
5 Sobic.004G086800 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
6 Sobic.002G394300 - -
7 Sobic.001G064900 syntaxin, putative, expressed K08486: syntaxin 1B/2/3
8 Sobic.004G286400 expressed protein -
9 Sobic.009G181100 translation initiation factor IF-2, putative, expressed -
10 Sobic.001G515800 no apical meristem protein, putative, expressed -
11 Sobic.005G165900 zinc finger, C3HC4 type domain containing protein, expressed -
12 Sobic.003G416500 SRC2 protein, putative, expressed -
13 Sobic.002G199500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CaM - probable calciumbinding protein CML45(PubMedID : 31721651)@EF hand family protein, putative, expressed K02183: calmodulin
14 Sobic.001G528200 B3 DNA binding domain containing protein, expressed -
15 Sobic.007G118301 - -
16 Sobic.006G188700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K16281: RING-H2 zinc finger protein RHA1
17 Sobic.001G450500 STE_MEK_ste7_MAP2K.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
18 Sobic.004G275100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.002G342800 GRAS family transcription factor domain containing protein, expressed -
20 Sobic.009G151900 expressed protein -


Gene co-expression network
sample Sobic004G281400 Sobic004G281400 Sobic002G174300 Sobic002G174300 Sobic004G281400--Sobic002G174300 Sobic002G323900 Sobic002G323900 Sobic004G281400--Sobic002G323900 Sobic009G010400 Sobic009G010400 Sobic004G281400--Sobic009G010400 Sobic006G259000 Sobic006G259000 Sobic004G281400--Sobic006G259000 Sobic004G086800 Sobic004G086800 Sobic004G281400--Sobic004G086800 Sobic002G394300 Sobic002G394300 Sobic004G281400--Sobic002G394300 Sobic001G064900 Sobic001G064900 Sobic004G281400--Sobic001G064900 Sobic004G286400 Sobic004G286400 Sobic004G281400--Sobic004G286400 Sobic009G181100 Sobic009G181100 Sobic004G281400--Sobic009G181100 Sobic001G450500 Sobic001G450500 Sobic002G174300--Sobic001G450500 Sobic005G165900 Sobic005G165900 Sobic002G174300--Sobic005G165900 Sobic002G386200 Sobic002G386200 Sobic002G174300--Sobic002G386200 Sobic005G041000 Sobic005G041000 Sobic002G174300--Sobic005G041000 Sobic004G181200 Sobic004G181200 Sobic002G174300--Sobic004G181200 Sobic004G160300 Sobic004G160300 Sobic002G174300--Sobic004G160300 Sobic002G174300--Sobic009G010400 Sobic009G214300 Sobic009G214300 Sobic002G174300--Sobic009G214300 Sobic003G258700 Sobic003G258700 Sobic002G174300--Sobic003G258700 Sobic002G323900--Sobic006G259000 Sobic003G416500 Sobic003G416500 Sobic002G323900--Sobic003G416500 Sobic007G077100 Sobic007G077100 Sobic002G323900--Sobic007G077100 Sobic001G489500 Sobic001G489500 Sobic002G323900--Sobic001G489500 Sobic010G023200 Sobic010G023200 Sobic002G323900--Sobic010G023200 Sobic002G323900--Sobic004G086800 Sobic002G269300 Sobic002G269300 Sobic002G323900--Sobic002G269300 Sobic002G323900--Sobic001G064900 Sobic002G323900--Sobic009G010400 Sobic009G010400--Sobic004G086800 Sobic004G065900 Sobic004G065900 Sobic009G010400--Sobic004G065900 Sobic009G010400--Sobic001G064900 Sobic009G100500 Sobic009G100500 Sobic009G010400--Sobic009G100500 Sobic006G257700 Sobic006G257700 Sobic009G010400--Sobic006G257700 Sobic009G010400--Sobic006G259000 Sobic001G095700 Sobic001G095700 Sobic009G010400--Sobic001G095700 Sobic010G102000 Sobic010G102000 Sobic009G010400--Sobic010G102000 Sobic004G006500 Sobic004G006500 Sobic009G010400--Sobic004G006500 Sobic006G259000--Sobic003G416500 Sobic006G259000--Sobic002G323900 Sobic006G259000--Sobic010G023200 Sobic006G259000--Sobic007G077100 Sobic010G105300 Sobic010G105300 Sobic006G259000--Sobic010G105300 Sobic006G259000--Sobic001G064900 Sobic006G259000--Sobic001G489500 Sobic006G259000--Sobic004G086800 Sobic009G217500 Sobic009G217500 Sobic006G259000--Sobic009G217500 Sobic004G086800--Sobic009G010400 Sobic004G086800--Sobic003G416500 Sobic004G086800--Sobic006G259000 Sobic004G086800--Sobic004G065900 Sobic004G086800--Sobic002G323900 Sobic004G086800--Sobic001G489500 Sobic004G086800--Sobic010G102000 Sobic002G138700 Sobic002G138700 Sobic004G086800--Sobic002G138700 Sobic001G287600 Sobic001G287600 Sobic004G086800--Sobic001G287600 Sobic005G017700 Sobic005G017700 Sobic002G394300--Sobic005G017700 Sobic002G394300--Sobic004G281400 Sobic001G188700 Sobic001G188700 Sobic002G394300--Sobic001G188700 Sobic010G079800 Sobic010G079800 Sobic002G394300--Sobic010G079800 Sobic008G168700 Sobic008G168700 Sobic002G394300--Sobic008G168700 Sobic006G181700 Sobic006G181700 Sobic002G394300--Sobic006G181700 Sobic009G232500 Sobic009G232500 Sobic002G394300--Sobic009G232500 Sobic009G070300 Sobic009G070300 Sobic002G394300--Sobic009G070300 Sobic002G066901 Sobic002G066901 Sobic002G394300--Sobic002G066901 Sobic001G064900--Sobic010G102000 Sobic001G064900--Sobic009G217500 Sobic006G273800 Sobic006G273800 Sobic001G064900--Sobic006G273800 Sobic001G064900--Sobic010G023200 Sobic001G064900--Sobic006G257700 Sobic001G064900--Sobic006G259000 Sobic001G064900--Sobic007G077100 Sobic001G064900--Sobic001G095700 Sobic003G341100 Sobic003G341100 Sobic001G064900--Sobic003G341100 Sobic004G286400--Sobic002G138700 Sobic003G067700 Sobic003G067700 Sobic004G286400--Sobic003G067700 Sobic007G034600 Sobic007G034600 Sobic004G286400--Sobic007G034600 Sobic004G286400--Sobic002G323900 Sobic004G286400--Sobic006G259000 Sobic004G286400--Sobic009G010400 Sobic010G071000 Sobic010G071000 Sobic004G286400--Sobic010G071000 Sobic007G224300 Sobic007G224300 Sobic004G286400--Sobic007G224300 Sobic007G118301 Sobic007G118301 Sobic004G286400--Sobic007G118301 Sobic010G215800 Sobic010G215800 Sobic009G181100--Sobic010G215800 Sobic002G039100 Sobic002G039100 Sobic009G181100--Sobic002G039100 Sobic010G001800 Sobic010G001800 Sobic009G181100--Sobic010G001800 Sobic001G440900 Sobic001G440900 Sobic009G181100--Sobic001G440900 Sobic001G439100 Sobic001G439100 Sobic009G181100--Sobic001G439100 Sobic001G429000 Sobic001G429000 Sobic009G181100--Sobic001G429000 Sobic001G505000 Sobic001G505000 Sobic009G181100--Sobic001G505000 Sobic001G117500 Sobic001G117500 Sobic009G181100--Sobic001G117500 Sobic009G157600 Sobic009G157600 Sobic009G181100--Sobic009G157600
Octagon: transcription factors


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