Gene annotation
Transcriptome id Sobic.006G188700.1
Synonym BRH1, Sb06g026220
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1B6PMS4
Pfam PF13639
Panther DB PTHR14155
NCBI CDD -
KEGG Orthology K16281; RING-H2 zinc finger protein RHA1
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G61460 : brassinosteroid-responsive RING-H2
RAP-DB (Rice) LOC_Os04g49000.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a010089 , Zm00025a032327 , Zm00025a050294 , Zm00025a056729 , Zm00025a021522
Brachypodium KQK20014 , KQJ84181 , PNT69238
Barley HORVU0Hr1G005330.5 , HORVU0Hr1G005330.4 , HORVU0Hr1G005330.2 , HORVU6Hr1G082760.2 , HORVU6Hr1G082760.1 , HORVU2Hr1G094090.2 , HORVU2Hr1G094090.1
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G188700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G281400 zinc finger, C3HC4 type domain containing protein, expressed K16281: RING-H2 zinc finger protein RHA1
2 Sobic.007G139900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.004G268900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.005G208900 expressed protein K11968: ariadne-1
5 Sobic.002G323900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PRAS-rich protein, putative, expressed -
6 Sobic.001G406300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
7 Sobic.007G223200 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
8 Sobic.007G182101 "TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054) -
9 Sobic.005G165900 zinc finger, C3HC4 type domain containing protein, expressed -
10 Sobic.004G086800 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
11 Sobic.001G287600 transcription factor MYC7E, putative, expressed K13422: transcription factor MYC2
12 Sobic.007G224300 RING finger protein, putative, expressed -
13 Sobic.001G359800 transcription regulator, putative, expressed -
14 Sobic.002G174300 senescence-related tran- scription factor gene(PubMedID : 26317421)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY74, expressed -
15 Sobic.002G417500 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
16 Sobic.007G077300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
17 Sobic.004G065900 CML (Calmodulin like protein) with WRKY-binding domain(PubMedID : 31721651)@transcription factor(PubMedID : 30367619)@WRKY71, expressed -
18 Sobic.007G201100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxysterol-binding protein, putative, expressed -
19 Sobic.001G292400 expressed protein -
20 Sobic.001G450500 STE_MEK_ste7_MAP2K.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -


Gene co-expression network
sample Sobic006G188700 Sobic006G188700 Sobic004G281400 Sobic004G281400 Sobic006G188700--Sobic004G281400 Sobic007G139900 Sobic007G139900 Sobic006G188700--Sobic007G139900 Sobic004G268900 Sobic004G268900 Sobic006G188700--Sobic004G268900 Sobic005G208900 Sobic005G208900 Sobic006G188700--Sobic005G208900 Sobic002G323900 Sobic002G323900 Sobic006G188700--Sobic002G323900 Sobic001G406300 Sobic001G406300 Sobic006G188700--Sobic001G406300 Sobic007G223200 Sobic007G223200 Sobic006G188700--Sobic007G223200 Sobic007G182101 Sobic007G182101 Sobic006G188700--Sobic007G182101 Sobic005G165900 Sobic005G165900 Sobic006G188700--Sobic005G165900 Sobic002G174300 Sobic002G174300 Sobic004G281400--Sobic002G174300 Sobic004G281400--Sobic002G323900 Sobic009G010400 Sobic009G010400 Sobic004G281400--Sobic009G010400 Sobic006G259000 Sobic006G259000 Sobic004G281400--Sobic006G259000 Sobic004G086800 Sobic004G086800 Sobic004G281400--Sobic004G086800 Sobic002G394300 Sobic002G394300 Sobic004G281400--Sobic002G394300 Sobic001G064900 Sobic001G064900 Sobic004G281400--Sobic001G064900 Sobic004G286400 Sobic004G286400 Sobic004G281400--Sobic004G286400 Sobic009G181100 Sobic009G181100 Sobic004G281400--Sobic009G181100 Sobic007G139900--Sobic009G010400 Sobic007G139900--Sobic005G208900 Sobic007G224300 Sobic007G224300 Sobic007G139900--Sobic007G224300 Sobic007G124100 Sobic007G124100 Sobic007G139900--Sobic007G124100 Sobic004G006500 Sobic004G006500 Sobic007G139900--Sobic004G006500 Sobic001G287600 Sobic001G287600 Sobic007G139900--Sobic001G287600 Sobic001G118900 Sobic001G118900 Sobic007G139900--Sobic001G118900 Sobic004G065900 Sobic004G065900 Sobic007G139900--Sobic004G065900 Sobic007G139900--Sobic004G086800 Sobic004G323600 Sobic004G323600 Sobic004G268900--Sobic004G323600 Sobic004G268900--Sobic004G065900 Sobic004G187800 Sobic004G187800 Sobic004G268900--Sobic004G187800 Sobic002G207300 Sobic002G207300 Sobic004G268900--Sobic002G207300 Sobic002G294600 Sobic002G294600 Sobic004G268900--Sobic002G294600 Sobic004G268900--Sobic004G086800 Sobic004G268900--Sobic001G287600 Sobic002G185200 Sobic002G185200 Sobic004G268900--Sobic002G185200 Sobic002G080100 Sobic002G080100 Sobic004G268900--Sobic002G080100 Sobic005G208900--Sobic007G139900 Sobic009G014200 Sobic009G014200 Sobic005G208900--Sobic009G014200 Sobic005G208900--Sobic007G224300 Sobic003G131500 Sobic003G131500 Sobic005G208900--Sobic003G131500 Sobic003G304100 Sobic003G304100 Sobic005G208900--Sobic003G304100 Sobic002G160600 Sobic002G160600 Sobic005G208900--Sobic002G160600 Sobic005G208900--Sobic001G287600 Sobic001G462800 Sobic001G462800 Sobic005G208900--Sobic001G462800 Sobic005G208900--Sobic007G124100 Sobic002G323900--Sobic006G259000 Sobic003G416500 Sobic003G416500 Sobic002G323900--Sobic003G416500 Sobic007G077100 Sobic007G077100 Sobic002G323900--Sobic007G077100 Sobic001G489500 Sobic001G489500 Sobic002G323900--Sobic001G489500 Sobic010G023200 Sobic010G023200 Sobic002G323900--Sobic010G023200 Sobic002G323900--Sobic004G086800 Sobic002G269300 Sobic002G269300 Sobic002G323900--Sobic002G269300 Sobic002G323900--Sobic001G064900 Sobic002G323900--Sobic009G010400 Sobic010G023300 Sobic010G023300 Sobic001G406300--Sobic010G023300 Sobic001G406300--Sobic002G294600 Sobic001G406300--Sobic004G065900 Sobic001G406300--Sobic002G185200 Sobic007G051800 Sobic007G051800 Sobic001G406300--Sobic007G051800 Sobic001G095700 Sobic001G095700 Sobic001G406300--Sobic001G095700 Sobic009G157100 Sobic009G157100 Sobic001G406300--Sobic009G157100 Sobic007G143400 Sobic007G143400 Sobic001G406300--Sobic007G143400 Sobic006G210300 Sobic006G210300 Sobic001G406300--Sobic006G210300 Sobic001G321800 Sobic001G321800 Sobic007G223200--Sobic001G321800 Sobic009G170100 Sobic009G170100 Sobic007G223200--Sobic009G170100 Sobic001G473900 Sobic001G473900 Sobic007G223200--Sobic001G473900 Sobic001G476400 Sobic001G476400 Sobic007G223200--Sobic001G476400 Sobic006G205600 Sobic006G205600 Sobic007G223200--Sobic006G205600 Sobic001G061900 Sobic001G061900 Sobic007G223200--Sobic001G061900 Sobic007G223200--Sobic007G051800 Sobic001G316900 Sobic001G316900 Sobic007G223200--Sobic001G316900 Sobic001G051600 Sobic001G051600 Sobic007G223200--Sobic001G051600 Sobic008G047600 Sobic008G047600 Sobic007G182101--Sobic008G047600 Sobic001G284425 Sobic001G284425 Sobic007G182101--Sobic001G284425 Sobic003G385000 Sobic003G385000 Sobic007G182101--Sobic003G385000 Sobic001G359800 Sobic001G359800 Sobic007G182101--Sobic001G359800 Sobic004G098800 Sobic004G098800 Sobic007G182101--Sobic004G098800 Sobic006G128200 Sobic006G128200 Sobic007G182101--Sobic006G128200 Sobic008G058200 Sobic008G058200 Sobic007G182101--Sobic008G058200 Sobic010G134700 Sobic010G134700 Sobic007G182101--Sobic010G134700 Sobic007G182101--Sobic004G268900 Sobic005G165900--Sobic002G174300 Sobic003G258700 Sobic003G258700 Sobic005G165900--Sobic003G258700 Sobic002G386200 Sobic002G386200 Sobic005G165900--Sobic002G386200 Sobic004G160300 Sobic004G160300 Sobic005G165900--Sobic004G160300 Sobic001G071300 Sobic001G071300 Sobic005G165900--Sobic001G071300 Sobic004G169900 Sobic004G169900 Sobic005G165900--Sobic004G169900 Sobic004G181200 Sobic004G181200 Sobic005G165900--Sobic004G181200 Sobic009G214300 Sobic009G214300 Sobic005G165900--Sobic009G214300 Sobic004G220600 Sobic004G220600 Sobic005G165900--Sobic004G220600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.