Gene annotation
Transcriptome id Sobic.004G314700.1
Synonym Sb04g034650, ATCNGC20, CNGC20, CNBT1
Functional annotation cyclic nucleotide-gated ion channel, putative, expressed
UniProt C5XTI7
Pfam PF00520
Panther DB PTHR10217 PTHR10217:SF475
NCBI CDD KOG0498; K+-channel ERG and related proteins, contain PAS/PAC sensor domain
KEGG Orthology K05391; cyclic nucleotide gated channel, plant
Gene Ontology GO:0016020; membrane GO:0006811ion transport GO:0005216ion channel activity


Orthologs (automatic annotation)
TAIR AT3G17700 : cyclic nucleotide-binding transporter 1
RAP-DB (Rice) LOC_Os02g53340.1 : cyclic nucleotide-gated ion channel, putative, expressed
MaizeGDB (Corn) Zm00025a022284
Brachypodium KQK01681
Barley HORVU6Hr1G079040.16 , HORVU6Hr1G079040.17 , HORVU6Hr1G079040.14 , HORVU6Hr1G079040.15 , HORVU6Hr1G079040.12 , HORVU6Hr1G079040.13 , HORVU6Hr1G079040.10 , HORVU6Hr1G079040.11 , HORVU6Hr1G079040.18 , HORVU6Hr1G079040.4 , HORVU6Hr1G079040.5 , HORVU6Hr1G079040.6 , HORVU6Hr1G079040.7 , HORVU6Hr1G079040.1 , HORVU6Hr1G079040.2 , HORVU6Hr1G079040.3 , HORVU6Hr1G079040.8 , HORVU6Hr1G079040.9
Wheat TraesCS6B02G354200 , TraesCS6B02G354200 , TraesCS6D02G303400 , TraesCS6D02G303400 , TraesCS6D02G303400 , TraesCS6D02G303400 , TraesCS6D02G303400 , TraesCS6D02G303400 , TraesCS7B02G072500 , TraesCS7D02G168500 , TraesCS6A02G323600 , TraesCS6A02G323600 , TraesCS6A02G323600 , TraesCS7B02G072500 , TraesCS7B02G072500 , TraesCS7B02G072500 , TraesCS7B02G072500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G050200 expressed protein -
2 Sobic.007G060201 - -
3 Sobic.001G305500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.001G207400 katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed K18643: katanin p80 WD40 repeat-containing subunit B1
5 Sobic.010G232600 solute carrier family 35 member F5, putative, expressed K15289: solute carrier family 35, member F5
6 Sobic.004G351100 signal peptide peptidase-like 2B, putative, expressed K09597: signal peptide peptidase-like 2B
7 Sobic.001G196500 plus-3 domain containing protein, putative, expressed -
8 Sobic.001G107600 - K18328: lariat debranching enzyme
9 Sobic.001G415300 "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@ABC transporter, ATP-binding protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
10 Sobic.001G281100 START domain containing protein, expressed -
11 Sobic.003G247300 protein of unknown function DUF1296 domain containing protein, expressed -
12 Sobic.001G117200 AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
13 Sobic.004G269200 protein kinase, putative, expressed K18670: dual specificity protein kinase YAK1
14 Sobic.010G072800 exportin-7-A, putative, expressed K18460: XPO7, exportin-7
15 Sobic.002G430000 expressed protein K08518: STXBP5, syntaxin-binding protein 5
16 Sobic.008G087866 - -
17 Sobic.010G118950 - -
18 Sobic.001G043100 EMB1745, putative, expressed K18723: nucleoporin GLE1
19 Sobic.006G279200 expressed protein K11789: DCAF1, DDB1- and CUL4-associated factor 1
20 Sobic.009G027300 MYB family transcription factor, putative, expressed K04650: NCOR1, nuclear receptor co-repressor 1


Gene co-expression network
sample Sobic004G314700 Sobic004G314700 Sobic001G050200 Sobic001G050200 Sobic004G314700--Sobic001G050200 Sobic007G060201 Sobic007G060201 Sobic004G314700--Sobic007G060201 Sobic001G305500 Sobic001G305500 Sobic004G314700--Sobic001G305500 Sobic001G207400 Sobic001G207400 Sobic004G314700--Sobic001G207400 Sobic010G232600 Sobic010G232600 Sobic004G314700--Sobic010G232600 Sobic004G351100 Sobic004G351100 Sobic004G314700--Sobic004G351100 Sobic001G196500 Sobic001G196500 Sobic004G314700--Sobic001G196500 Sobic001G107600 Sobic001G107600 Sobic004G314700--Sobic001G107600 Sobic001G415300 Sobic001G415300 Sobic004G314700--Sobic001G415300 Sobic002G419800 Sobic002G419800 Sobic001G050200--Sobic002G419800 Sobic003G422500 Sobic003G422500 Sobic001G050200--Sobic003G422500 Sobic009G027300 Sobic009G027300 Sobic001G050200--Sobic009G027300 Sobic003G247300 Sobic003G247300 Sobic001G050200--Sobic003G247300 Sobic009G191000 Sobic009G191000 Sobic001G050200--Sobic009G191000 Sobic007G075400 Sobic007G075400 Sobic001G050200--Sobic007G075400 Sobic004G269200 Sobic004G269200 Sobic001G050200--Sobic004G269200 Sobic004G331100 Sobic004G331100 Sobic001G050200--Sobic004G331100 Sobic003G101400 Sobic003G101400 Sobic001G050200--Sobic003G101400 Sobic001G281100 Sobic001G281100 Sobic007G060201--Sobic001G281100 Sobic004G277200 Sobic004G277200 Sobic007G060201--Sobic004G277200 Sobic007G060201--Sobic001G207400 Sobic007G060201--Sobic004G269200 Sobic008G087866 Sobic008G087866 Sobic007G060201--Sobic008G087866 Sobic010G118950 Sobic010G118950 Sobic007G060201--Sobic010G118950 Sobic007G060201--Sobic001G050200 Sobic004G135400 Sobic004G135400 Sobic007G060201--Sobic004G135400 Sobic002G045600 Sobic002G045600 Sobic007G060201--Sobic002G045600 Sobic006G104600 Sobic006G104600 Sobic001G305500--Sobic006G104600 Sobic002G262300 Sobic002G262300 Sobic001G305500--Sobic002G262300 Sobic001G305500--Sobic001G207400 Sobic003G398100 Sobic003G398100 Sobic001G305500--Sobic003G398100 Sobic002G266000 Sobic002G266000 Sobic001G305500--Sobic002G266000 Sobic006G087700 Sobic006G087700 Sobic001G305500--Sobic006G087700 Sobic001G305500--Sobic004G314700 Sobic007G210500 Sobic007G210500 Sobic001G305500--Sobic007G210500 Sobic006G199000 Sobic006G199000 Sobic001G305500--Sobic006G199000 Sobic004G355000 Sobic004G355000 Sobic001G207400--Sobic004G355000 Sobic002G430000 Sobic002G430000 Sobic001G207400--Sobic002G430000 Sobic002G270500 Sobic002G270500 Sobic001G207400--Sobic002G270500 Sobic006G204900 Sobic006G204900 Sobic001G207400--Sobic006G204900 Sobic005G157000 Sobic005G157000 Sobic001G207400--Sobic005G157000 Sobic010G139600 Sobic010G139600 Sobic001G207400--Sobic010G139600 Sobic002G111000 Sobic002G111000 Sobic001G207400--Sobic002G111000 Sobic003G322700 Sobic003G322700 Sobic001G207400--Sobic003G322700 Sobic001G207400--Sobic001G050200 Sobic006G126100 Sobic006G126100 Sobic010G232600--Sobic006G126100 Sobic004G004300 Sobic004G004300 Sobic010G232600--Sobic004G004300 Sobic010G232600--Sobic001G281100 Sobic010G232600--Sobic004G135400 Sobic010G232600--Sobic001G415300 Sobic010G232600--Sobic001G050200 Sobic004G261600 Sobic004G261600 Sobic010G232600--Sobic004G261600 Sobic010G232600--Sobic004G351100 Sobic004G178200 Sobic004G178200 Sobic010G232600--Sobic004G178200 Sobic004G351100--Sobic010G118950 Sobic010G276900 Sobic010G276900 Sobic004G351100--Sobic010G276900 Sobic004G351100--Sobic001G281100 Sobic001G441400 Sobic001G441400 Sobic004G351100--Sobic001G441400 Sobic007G207000 Sobic007G207000 Sobic004G351100--Sobic007G207000 Sobic004G091100 Sobic004G091100 Sobic004G351100--Sobic004G091100 Sobic010G116600 Sobic010G116600 Sobic004G351100--Sobic010G116600 Sobic004G351100--Sobic004G004300 Sobic004G351100--Sobic001G050200 Sobic003G229500 Sobic003G229500 Sobic001G196500--Sobic003G229500 Sobic002G299700 Sobic002G299700 Sobic001G196500--Sobic002G299700 Sobic010G275500 Sobic010G275500 Sobic001G196500--Sobic010G275500 Sobic008G132600 Sobic008G132600 Sobic001G196500--Sobic008G132600 Sobic001G196500--Sobic003G101400 Sobic001G540400 Sobic001G540400 Sobic001G196500--Sobic001G540400 Sobic003G408600 Sobic003G408600 Sobic001G196500--Sobic003G408600 Sobic002G397500 Sobic002G397500 Sobic001G196500--Sobic002G397500 Sobic001G457900 Sobic001G457900 Sobic001G196500--Sobic001G457900 Sobic001G107600--Sobic001G050200 Sobic010G228400 Sobic010G228400 Sobic001G107600--Sobic010G228400 Sobic001G390800 Sobic001G390800 Sobic001G107600--Sobic001G390800 Sobic003G365300 Sobic003G365300 Sobic001G107600--Sobic003G365300 Sobic006G115600 Sobic006G115600 Sobic001G107600--Sobic006G115600 Sobic004G264400 Sobic004G264400 Sobic001G107600--Sobic004G264400 Sobic002G427050 Sobic002G427050 Sobic001G107600--Sobic002G427050 Sobic003G372500 Sobic003G372500 Sobic001G107600--Sobic003G372500 Sobic010G227100 Sobic010G227100 Sobic001G107600--Sobic010G227100 Sobic002G137400 Sobic002G137400 Sobic001G415300--Sobic002G137400 Sobic001G415300--Sobic004G004300 Sobic001G415300--Sobic001G281100 Sobic001G085300 Sobic001G085300 Sobic001G415300--Sobic001G085300 Sobic003G337300 Sobic003G337300 Sobic001G415300--Sobic003G337300 Sobic001G415300--Sobic006G126100 Sobic001G534800 Sobic001G534800 Sobic001G415300--Sobic001G534800 Sobic004G002100 Sobic004G002100 Sobic001G415300--Sobic004G002100 Sobic001G415300--Sobic001G457900
Octagon: transcription factors


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