Gene annotation
Transcriptome id Sobic.004G339400.1
Synonym Sb04g036690
Functional annotation expressed protein
UniProt C5XV78
Pfam -
Panther DB PTHR34568 PTHR34568:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G58210 : hydroxyproline-rich glycoprotein family protein
RAP-DB (Rice) LOC_Os02g42550.1 : expressed protein
MaizeGDB (Corn) Zm00025a021011 , Zm00025a032099
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G105900 IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed -
2 Sobic.003G211700 expressed protein -
3 Sobic.004G316800 RPA1A - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
4 Sobic.009G227100 expressed protein -
5 Sobic.001G008100 expressed protein K17966: transmembrane protein 70, mitochondrial
6 Sobic.009G199500 ribosomal protein L27, putative, expressed K02899: RP-L27, MRPL27, large subunit ribosomal protein L27
7 Sobic.004G004100 nucleic acid binding protein, putative, expressed -
8 Sobic.002G131400 GPI mannosyltransferase 1, putative, expressed K05284: GPI mannosyltransferase 1 subunit M
9 Sobic.006G220400 exonuclease, putative, expressed -
10 Sobic.002G136400 expressed protein -
11 Sobic.009G252300 expressed protein -
12 Sobic.003G113400 ribosomal protein L3, putative, expressed K02906: RP-L3, MRPL3, large subunit ribosomal protein L3
13 Sobic.003G181700 GPI mannosyltransferase 2, putative, expressed K07542: GPI mannosyltransferase 2
14 Sobic.001G043200 expressed protein -
15 Sobic.007G115900 SAM domain family protein, expressed -
16 Sobic.004G122900 gamma-secretase subunit APH-1B, putative, expressed -
17 Sobic.003G167000 protein phosphotase protein, putative, expressed -
18 Sobic.005G009100 OsFBX184 - F-box domain containing protein, expressed -
19 Sobic.001G203600 PPR repeat domain containing protein, putative, expressed -
20 Sobic.001G141400 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -


Gene co-expression network
sample Sobic004G339400 Sobic004G339400 Sobic007G105900 Sobic007G105900 Sobic004G339400--Sobic007G105900 Sobic003G211700 Sobic003G211700 Sobic004G339400--Sobic003G211700 Sobic004G316800 Sobic004G316800 Sobic004G339400--Sobic004G316800 Sobic009G227100 Sobic009G227100 Sobic004G339400--Sobic009G227100 Sobic001G008100 Sobic001G008100 Sobic004G339400--Sobic001G008100 Sobic009G199500 Sobic009G199500 Sobic004G339400--Sobic009G199500 Sobic004G004100 Sobic004G004100 Sobic004G339400--Sobic004G004100 Sobic002G131400 Sobic002G131400 Sobic004G339400--Sobic002G131400 Sobic006G220400 Sobic006G220400 Sobic004G339400--Sobic006G220400 Sobic001G405600 Sobic001G405600 Sobic007G105900--Sobic001G405600 Sobic001G035200 Sobic001G035200 Sobic007G105900--Sobic001G035200 Sobic007G017800 Sobic007G017800 Sobic007G105900--Sobic007G017800 Sobic002G136400 Sobic002G136400 Sobic007G105900--Sobic002G136400 Sobic001G207500 Sobic001G207500 Sobic007G105900--Sobic001G207500 Sobic010G059500 Sobic010G059500 Sobic007G105900--Sobic010G059500 Sobic010G034100 Sobic010G034100 Sobic007G105900--Sobic010G034100 Sobic007G105900--Sobic002G131400 Sobic007G189000 Sobic007G189000 Sobic007G105900--Sobic007G189000 Sobic007G115900 Sobic007G115900 Sobic003G211700--Sobic007G115900 Sobic003G211700--Sobic004G316800 Sobic007G053400 Sobic007G053400 Sobic003G211700--Sobic007G053400 Sobic007G158900 Sobic007G158900 Sobic003G211700--Sobic007G158900 Sobic003G113400 Sobic003G113400 Sobic003G211700--Sobic003G113400 Sobic007G212800 Sobic007G212800 Sobic003G211700--Sobic007G212800 Sobic005G178950 Sobic005G178950 Sobic003G211700--Sobic005G178950 Sobic010G048900 Sobic010G048900 Sobic003G211700--Sobic010G048900 Sobic003G131300 Sobic003G131300 Sobic003G211700--Sobic003G131300 Sobic004G316800--Sobic007G115900 Sobic004G316800--Sobic003G211700 Sobic001G522900 Sobic001G522900 Sobic004G316800--Sobic001G522900 Sobic006G092800 Sobic006G092800 Sobic004G316800--Sobic006G092800 Sobic006G258900 Sobic006G258900 Sobic004G316800--Sobic006G258900 Sobic002G378200 Sobic002G378200 Sobic004G316800--Sobic002G378200 Sobic003G374000 Sobic003G374000 Sobic004G316800--Sobic003G374000 Sobic010G074900 Sobic010G074900 Sobic004G316800--Sobic010G074900 Sobic004G007300 Sobic004G007300 Sobic004G316800--Sobic004G007300 Sobic005G123400 Sobic005G123400 Sobic009G227100--Sobic005G123400 Sobic001G043200 Sobic001G043200 Sobic009G227100--Sobic001G043200 Sobic009G227100--Sobic009G199500 Sobic009G227100--Sobic006G220400 Sobic009G252300 Sobic009G252300 Sobic009G227100--Sobic009G252300 Sobic001G052100 Sobic001G052100 Sobic009G227100--Sobic001G052100 Sobic004G334200 Sobic004G334200 Sobic009G227100--Sobic004G334200 Sobic003G190200 Sobic003G190200 Sobic009G227100--Sobic003G190200 Sobic010G112600 Sobic010G112600 Sobic009G227100--Sobic010G112600 Sobic004G039400 Sobic004G039400 Sobic001G008100--Sobic004G039400 Sobic006G041800 Sobic006G041800 Sobic001G008100--Sobic006G041800 Sobic001G465400 Sobic001G465400 Sobic001G008100--Sobic001G465400 Sobic010G040900 Sobic010G040900 Sobic001G008100--Sobic010G040900 Sobic001G387800 Sobic001G387800 Sobic001G008100--Sobic001G387800 Sobic003G276100 Sobic003G276100 Sobic001G008100--Sobic003G276100 Sobic002G079700 Sobic002G079700 Sobic001G008100--Sobic002G079700 Sobic009G191400 Sobic009G191400 Sobic001G008100--Sobic009G191400 Sobic002G276800 Sobic002G276800 Sobic001G008100--Sobic002G276800 Sobic009G199500--Sobic007G158900 Sobic009G199500--Sobic009G227100 Sobic003G445200 Sobic003G445200 Sobic009G199500--Sobic003G445200 Sobic002G299100 Sobic002G299100 Sobic009G199500--Sobic002G299100 Sobic009G199500--Sobic002G131400 Sobic004G122900 Sobic004G122900 Sobic009G199500--Sobic004G122900 Sobic004G084400 Sobic004G084400 Sobic009G199500--Sobic004G084400 Sobic009G199500--Sobic001G043200 Sobic002G398500 Sobic002G398500 Sobic009G199500--Sobic002G398500 Sobic010G181600 Sobic010G181600 Sobic004G004100--Sobic010G181600 Sobic007G077532 Sobic007G077532 Sobic004G004100--Sobic007G077532 Sobic001G356200 Sobic001G356200 Sobic004G004100--Sobic001G356200 Sobic008G152700 Sobic008G152700 Sobic004G004100--Sobic008G152700 Sobic003G428000 Sobic003G428000 Sobic004G004100--Sobic003G428000 Sobic009G046900 Sobic009G046900 Sobic004G004100--Sobic009G046900 Sobic003G058500 Sobic003G058500 Sobic004G004100--Sobic003G058500 Sobic003G117800 Sobic003G117800 Sobic004G004100--Sobic003G117800 Sobic001G149000 Sobic001G149000 Sobic004G004100--Sobic001G149000 Sobic002G131400--Sobic004G122900 Sobic001G467100 Sobic001G467100 Sobic002G131400--Sobic001G467100 Sobic002G131400--Sobic009G199500 Sobic001G211900 Sobic001G211900 Sobic002G131400--Sobic001G211900 Sobic001G099900 Sobic001G099900 Sobic002G131400--Sobic001G099900 Sobic002G364900 Sobic002G364900 Sobic002G131400--Sobic002G364900 Sobic002G131400--Sobic001G405600 Sobic002G131400--Sobic007G105900 Sobic003G181700 Sobic003G181700 Sobic002G131400--Sobic003G181700 Sobic006G220400--Sobic001G043200 Sobic006G220400--Sobic005G123400 Sobic006G220400--Sobic009G227100 Sobic006G012300 Sobic006G012300 Sobic006G220400--Sobic006G012300 Sobic001G203600 Sobic001G203600 Sobic006G220400--Sobic001G203600 Sobic006G103700 Sobic006G103700 Sobic006G220400--Sobic006G103700 Sobic007G204000 Sobic007G204000 Sobic006G220400--Sobic007G204000 Sobic004G194100 Sobic004G194100 Sobic006G220400--Sobic004G194100 Sobic006G220400--Sobic004G334200
Octagon: transcription factors


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