Gene annotation
Transcriptome id Sobic.005G020300.4,Sobic.005G020300.5,Sobic.005G020300.3
Synonym Sb05g001740, LACS8
Functional annotation acyl-CoA synthetase protein, putative, expressed
UniProt A0A1B6PPQ8
Pfam PF00501
Panther DB PTHR24096 PTHR24096:SF219
NCBI CDD -
KEGG Orthology K01897; ACSL, long-chain acyl-CoA synthetase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT2G04350 : AMP-dependent synthetase and ligase family protein
RAP-DB (Rice) LOC_Os05g25310.1,LOC_Os05g25310.2 : acyl-CoA synthetase protein, putative, expressed
MaizeGDB (Corn) Zm00025a033368 , Zm00025a013141
Brachypodium KQJ93302 , KQJ93303 , KQJ86985
Barley HORVU5Hr1G052100.1 , HORVU5Hr1G052100.2 , HORVU5Hr1G052100.5 , HORVU5Hr1G052100.4 , HORVU5Hr1G052100.7 , HORVU5Hr1G052100.6 , HORVU5Hr1G052100.9 , HORVU5Hr1G052100.8 , HORVU5Hr1G052100.20 , HORVU5Hr1G052100.21 , HORVU5Hr1G052100.22 , HORVU5Hr1G052100.23 , HORVU5Hr1G052100.24 , HORVU5Hr1G052100.15 , HORVU5Hr1G052100.14 , HORVU5Hr1G052100.17 , HORVU5Hr1G052100.16 , HORVU5Hr1G052100.11 , HORVU5Hr1G052100.10 , HORVU5Hr1G052100.13 , HORVU5Hr1G052100.12 , HORVU5Hr1G052100.19 , HORVU5Hr1G052100.18
Wheat TraesCS5B02G166400 , TraesCS5D02G174000 , TraesCS5A02G169600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.005G020300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G209200 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
2 Sobic.001G404600 expressed protein K18270: Rab3 GTPase-activating protein catalytic subunit
3 Sobic.001G255800 CPuORF15 - conserved peptide uORF-containing transcript, expressed -
4 Sobic.010G230600 DnaK family protein, putative, expressed K09489: heat shock 70kDa protein 4
5 Sobic.004G204100 expressed protein -
6 Sobic.006G077300 expressed protein K17637: EXOC2, exocyst complex component 2
7 Sobic.003G171400 HEAT repeat family protein, putative, expressed -
8 Sobic.006G021700 expressed protein K17600: vacuolar protein sorting-associated protein 54
9 Sobic.006G131000 expressed protein K11968: ariadne-1
10 Sobic.007G162100 TENA/THI-4 family protein, putative, expressed -
11 Sobic.001G449900 conserved oligomeric complex COG6 family protein, expressed -
12 Sobic.006G127600 signal peptide peptidase-like 2B, putative, expressed K09597: signal peptide peptidase-like 2B
13 Sobic.005G062200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
14 Sobic.005G110499 - K14006: protein transport protein SEC23
15 Sobic.002G020700 WD domain, G-beta repeat domain containing protein, expressed K14018: PLAA, DOA1, phospholipase A-2-activating protein
16 Sobic.001G301200 pattern formation protein EMB30, putative, expressed K18443: golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1
17 Sobic.010G020400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
18 Sobic.002G070600 coatomer subunit gamma-2, putative, expressed K17267: coatomer subunit gamma
19 Sobic.001G065100 cullin, putative, expressed K10609: cullin 4
20 Sobic.008G157200 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase


Gene co-expression network
sample Sobic005G020300 Sobic005G020300 Sobic003G209200 Sobic003G209200 Sobic005G020300--Sobic003G209200 Sobic001G404600 Sobic001G404600 Sobic005G020300--Sobic001G404600 Sobic001G255800 Sobic001G255800 Sobic005G020300--Sobic001G255800 Sobic010G230600 Sobic010G230600 Sobic005G020300--Sobic010G230600 Sobic004G204100 Sobic004G204100 Sobic005G020300--Sobic004G204100 Sobic006G077300 Sobic006G077300 Sobic005G020300--Sobic006G077300 Sobic003G171400 Sobic003G171400 Sobic005G020300--Sobic003G171400 Sobic006G021700 Sobic006G021700 Sobic005G020300--Sobic006G021700 Sobic006G131000 Sobic006G131000 Sobic005G020300--Sobic006G131000 Sobic007G005500 Sobic007G005500 Sobic003G209200--Sobic007G005500 Sobic006G260500 Sobic006G260500 Sobic003G209200--Sobic006G260500 Sobic003G209200--Sobic006G077300 Sobic003G209200--Sobic006G021700 Sobic005G062200 Sobic005G062200 Sobic003G209200--Sobic005G062200 Sobic004G241900 Sobic004G241900 Sobic003G209200--Sobic004G241900 Sobic004G261600 Sobic004G261600 Sobic003G209200--Sobic004G261600 Sobic005G110499 Sobic005G110499 Sobic003G209200--Sobic005G110499 Sobic009G077600 Sobic009G077600 Sobic003G209200--Sobic009G077600 Sobic008G124800 Sobic008G124800 Sobic001G404600--Sobic008G124800 Sobic003G233400 Sobic003G233400 Sobic001G404600--Sobic003G233400 Sobic002G308500 Sobic002G308500 Sobic001G404600--Sobic002G308500 Sobic001G287500 Sobic001G287500 Sobic001G404600--Sobic001G287500 Sobic002G020700 Sobic002G020700 Sobic001G404600--Sobic002G020700 Sobic009G084900 Sobic009G084900 Sobic001G404600--Sobic009G084900 Sobic004G322400 Sobic004G322400 Sobic001G404600--Sobic004G322400 Sobic001G404600--Sobic006G021700 Sobic001G301200 Sobic001G301200 Sobic001G404600--Sobic001G301200 Sobic003G039000 Sobic003G039000 Sobic001G255800--Sobic003G039000 Sobic001G065100 Sobic001G065100 Sobic001G255800--Sobic001G065100 Sobic004G053500 Sobic004G053500 Sobic001G255800--Sobic004G053500 Sobic002G401500 Sobic002G401500 Sobic001G255800--Sobic002G401500 Sobic003G296900 Sobic003G296900 Sobic001G255800--Sobic003G296900 Sobic001G255800--Sobic005G062200 Sobic008G088872 Sobic008G088872 Sobic001G255800--Sobic008G088872 Sobic001G263600 Sobic001G263600 Sobic001G255800--Sobic001G263600 Sobic001G255800--Sobic003G171400 Sobic001G428800 Sobic001G428800 Sobic010G230600--Sobic001G428800 Sobic001G449900 Sobic001G449900 Sobic010G230600--Sobic001G449900 Sobic007G162100 Sobic007G162100 Sobic010G230600--Sobic007G162100 Sobic010G020400 Sobic010G020400 Sobic010G230600--Sobic010G020400 Sobic006G039400 Sobic006G039400 Sobic010G230600--Sobic006G039400 Sobic004G092500 Sobic004G092500 Sobic010G230600--Sobic004G092500 Sobic001G156900 Sobic001G156900 Sobic010G230600--Sobic001G156900 Sobic007G125000 Sobic007G125000 Sobic010G230600--Sobic007G125000 Sobic008G085700 Sobic008G085700 Sobic010G230600--Sobic008G085700 Sobic010G223100 Sobic010G223100 Sobic004G204100--Sobic010G223100 Sobic010G139500 Sobic010G139500 Sobic004G204100--Sobic010G139500 Sobic004G204100--Sobic001G287500 Sobic004G204100--Sobic003G233400 Sobic004G023100 Sobic004G023100 Sobic004G204100--Sobic004G023100 Sobic003G314700 Sobic003G314700 Sobic004G204100--Sobic003G314700 Sobic002G179400 Sobic002G179400 Sobic004G204100--Sobic002G179400 Sobic004G040500 Sobic004G040500 Sobic004G204100--Sobic004G040500 Sobic003G163200 Sobic003G163200 Sobic004G204100--Sobic003G163200 Sobic006G077300--Sobic006G260500 Sobic006G077300--Sobic006G021700 Sobic006G077300--Sobic003G209200 Sobic001G056800 Sobic001G056800 Sobic006G077300--Sobic001G056800 Sobic006G077300--Sobic002G401500 Sobic003G114400 Sobic003G114400 Sobic006G077300--Sobic003G114400 Sobic006G077300--Sobic007G005500 Sobic006G077300--Sobic005G062200 Sobic002G042600 Sobic002G042600 Sobic006G077300--Sobic002G042600 Sobic003G171400--Sobic004G040500 Sobic003G221400 Sobic003G221400 Sobic003G171400--Sobic003G221400 Sobic002G147600 Sobic002G147600 Sobic003G171400--Sobic002G147600 Sobic003G171400--Sobic001G255800 Sobic003G171400--Sobic002G401500 Sobic003G171400--Sobic002G179400 Sobic001G493700 Sobic001G493700 Sobic003G171400--Sobic001G493700 Sobic002G335600 Sobic002G335600 Sobic003G171400--Sobic002G335600 Sobic008G085300 Sobic008G085300 Sobic003G171400--Sobic008G085300 Sobic006G021700--Sobic008G124800 Sobic006G021700--Sobic006G077300 Sobic002G340900 Sobic002G340900 Sobic006G021700--Sobic002G340900 Sobic005G059500 Sobic005G059500 Sobic006G021700--Sobic005G059500 Sobic006G021700--Sobic003G209200 Sobic003G346400 Sobic003G346400 Sobic006G021700--Sobic003G346400 Sobic010G000800 Sobic010G000800 Sobic006G021700--Sobic010G000800 Sobic006G021700--Sobic007G005500 Sobic006G021700--Sobic005G110499 Sobic007G218000 Sobic007G218000 Sobic006G131000--Sobic007G218000 Sobic007G132100 Sobic007G132100 Sobic006G131000--Sobic007G132100 Sobic006G163800 Sobic006G163800 Sobic006G131000--Sobic006G163800 Sobic004G039600 Sobic004G039600 Sobic006G131000--Sobic004G039600 Sobic001G096000 Sobic001G096000 Sobic006G131000--Sobic001G096000 Sobic006G174850 Sobic006G174850 Sobic006G131000--Sobic006G174850 Sobic010G275500 Sobic010G275500 Sobic006G131000--Sobic010G275500 Sobic001G369000 Sobic001G369000 Sobic006G131000--Sobic001G369000 Sobic004G178200 Sobic004G178200 Sobic006G131000--Sobic004G178200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.