Gene annotation
Transcriptome id Sobic.005G025700.1
Synonym Sb05g002130, ELF9
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5Y429
Pfam PF14237 PF13893 PF00076
Panther DB PTHR15608
NCBI CDD KOG1548; Transcription elongation factor TAT-SF1
KEGG Orthology K13093; HIV Tat-specific factor 1
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G16260 : RNA binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os04g41910.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a013108 , Zm00025a048076 , Zm00025a033402
Brachypodium KQJ83371
Barley HORVU2Hr1G085730.5 , HORVU2Hr1G085730.4 , HORVU2Hr1G085730.7 , HORVU2Hr1G085730.6 , HORVU2Hr1G085730.3 , HORVU2Hr1G085730.2 , HORVU2Hr1G085730.9 , HORVU2Hr1G085730.8 , HORVU2Hr1G085730.11 , HORVU2Hr1G085730.10
Wheat TraesCS2A02G353300 , TraesCS2B02G371200 , TraesCS2B02G371200 , TraesCS2D02G350800
Populus -


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cDNA sequences
Sobic.005G025700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G008500 VHS and GAT domain containing protein, expressed -
2 Sobic.001G155000 DNA-directed RNA polymerase II subunit RPB2, putative, expressed K03010: RPB2, DNA-directed RNA polymerase II subunit RPB2
3 Sobic.007G217000 tetratricopeptide repeat domain containing protein, expressed K13342: PEX5, peroxin-5
4 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
5 Sobic.007G118600 mitochondrial carrier protein, putative, expressed K15119: solute carrier family 25, member 39/40
6 Sobic.002G370900 OsPOP16 - Putative Prolyl Oligopeptidase homologue, expressed K06889: uncharacterized protein
7 Sobic.008G067600 protein kinase PKN/PRK1, effector, putative, expressed -
8 Sobic.002G310200 expressed protein -
9 Sobic.001G452000 heat shock protein DnaJ, putative, expressed K03686: molecular chaperone DnaJ
10 Sobic.004G067700 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
11 Sobic.003G056100 transcription initiation factor, putative, expressed K03129: transcription initiation factor TFIID subunit 4
12 Sobic.003G012500 expressed protein -
13 Sobic.009G245800 protein of unknown function DUF1296 domain containing protein, expressed -
14 Sobic.003G187400 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
15 Sobic.001G176200 FHA domain containing protein, putative, expressed K13216: PPP1R8, nuclear inhibitor of protein phosphatase 1
16 Sobic.006G195700 WD domain, G-beta repeat domain containing protein, expressed K14962: WDR82, SWD2, COMPASS component SWD2
17 Sobic.002G297200 ZOS9-19 - C2H2 zinc finger protein, expressed -
18 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
19 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
20 Sobic.004G084700 - -


Gene co-expression network
sample Sobic005G025700 Sobic005G025700 Sobic003G008500 Sobic003G008500 Sobic005G025700--Sobic003G008500 Sobic001G155000 Sobic001G155000 Sobic005G025700--Sobic001G155000 Sobic007G217000 Sobic007G217000 Sobic005G025700--Sobic007G217000 Sobic006G173100 Sobic006G173100 Sobic005G025700--Sobic006G173100 Sobic007G118600 Sobic007G118600 Sobic005G025700--Sobic007G118600 Sobic002G370900 Sobic002G370900 Sobic005G025700--Sobic002G370900 Sobic008G067600 Sobic008G067600 Sobic005G025700--Sobic008G067600 Sobic002G310200 Sobic002G310200 Sobic005G025700--Sobic002G310200 Sobic001G452000 Sobic001G452000 Sobic005G025700--Sobic001G452000 Sobic002G157300 Sobic002G157300 Sobic003G008500--Sobic002G157300 Sobic006G082900 Sobic006G082900 Sobic003G008500--Sobic006G082900 Sobic003G008500--Sobic002G370900 Sobic004G067700 Sobic004G067700 Sobic003G008500--Sobic004G067700 Sobic003G401000 Sobic003G401000 Sobic003G008500--Sobic003G401000 Sobic001G514000 Sobic001G514000 Sobic003G008500--Sobic001G514000 Sobic003G008500--Sobic006G173100 Sobic006G202200 Sobic006G202200 Sobic003G008500--Sobic006G202200 Sobic006G128800 Sobic006G128800 Sobic003G008500--Sobic006G128800 Sobic008G047800 Sobic008G047800 Sobic001G155000--Sobic008G047800 Sobic002G006900 Sobic002G006900 Sobic001G155000--Sobic002G006900 Sobic003G200200 Sobic003G200200 Sobic001G155000--Sobic003G200200 Sobic009G040600 Sobic009G040600 Sobic001G155000--Sobic009G040600 Sobic001G222500 Sobic001G222500 Sobic001G155000--Sobic001G222500 Sobic007G011300 Sobic007G011300 Sobic001G155000--Sobic007G011300 Sobic008G153000 Sobic008G153000 Sobic001G155000--Sobic008G153000 Sobic010G053800 Sobic010G053800 Sobic001G155000--Sobic010G053800 Sobic001G155000--Sobic007G217000 Sobic001G114000 Sobic001G114000 Sobic007G217000--Sobic001G114000 Sobic007G217000--Sobic008G047800 Sobic009G166300 Sobic009G166300 Sobic007G217000--Sobic009G166300 Sobic007G217000--Sobic001G155000 Sobic001G474600 Sobic001G474600 Sobic007G217000--Sobic001G474600 Sobic007G217000--Sobic007G011300 Sobic007G217000--Sobic007G118600 Sobic007G217000--Sobic002G310200 Sobic007G217000--Sobic004G067700 Sobic001G090400 Sobic001G090400 Sobic006G173100--Sobic001G090400 Sobic006G173100--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic006G173100--Sobic003G187400 Sobic002G197100 Sobic002G197100 Sobic006G173100--Sobic002G197100 Sobic004G021100 Sobic004G021100 Sobic006G173100--Sobic004G021100 Sobic006G032400 Sobic006G032400 Sobic006G173100--Sobic006G032400 Sobic001G512700 Sobic001G512700 Sobic006G173100--Sobic001G512700 Sobic006G173100--Sobic004G067700 Sobic006G173100--Sobic002G370900 Sobic007G118600--Sobic001G512700 Sobic007G118600--Sobic007G217000 Sobic007G118600--Sobic003G187400 Sobic007G118600--Sobic004G021100 Sobic007G118600--Sobic008G047800 Sobic007G118600--Sobic006G173100 Sobic007G118600--Sobic001G155000 Sobic007G118600--Sobic004G067700 Sobic005G045300 Sobic005G045300 Sobic007G118600--Sobic005G045300 Sobic001G176200 Sobic001G176200 Sobic002G370900--Sobic001G176200 Sobic002G370900--Sobic006G082900 Sobic002G370900--Sobic004G067700 Sobic002G370900--Sobic006G173100 Sobic002G370900--Sobic003G008500 Sobic002G260400 Sobic002G260400 Sobic002G370900--Sobic002G260400 Sobic002G370900--Sobic002G310200 Sobic002G370900--Sobic002G197100 Sobic004G345700 Sobic004G345700 Sobic002G370900--Sobic004G345700 Sobic008G067600--Sobic001G090400 Sobic003G445400 Sobic003G445400 Sobic008G067600--Sobic003G445400 Sobic004G084300 Sobic004G084300 Sobic008G067600--Sobic004G084300 Sobic008G067600--Sobic002G157300 Sobic001G315100 Sobic001G315100 Sobic008G067600--Sobic001G315100 Sobic008G067600--Sobic001G512700 Sobic009G000500 Sobic009G000500 Sobic008G067600--Sobic009G000500 Sobic004G057400 Sobic004G057400 Sobic008G067600--Sobic004G057400 Sobic008G067600--Sobic008G047800 Sobic002G310200--Sobic001G222500 Sobic002G310200--Sobic008G047800 Sobic002G310200--Sobic007G217000 Sobic002G310200--Sobic004G084300 Sobic007G096000 Sobic007G096000 Sobic002G310200--Sobic007G096000 Sobic010G101800 Sobic010G101800 Sobic002G310200--Sobic010G101800 Sobic003G443100 Sobic003G443100 Sobic002G310200--Sobic003G443100 Sobic002G310200--Sobic008G067600 Sobic002G310200--Sobic004G067700 Sobic004G084700 Sobic004G084700 Sobic001G452000--Sobic004G084700 Sobic005G118600 Sobic005G118600 Sobic001G452000--Sobic005G118600 Sobic001G441400 Sobic001G441400 Sobic001G452000--Sobic001G441400 Sobic010G236400 Sobic010G236400 Sobic001G452000--Sobic010G236400 Sobic001G452000--Sobic003G445400 Sobic001G452000--Sobic004G067700 Sobic001G091400 Sobic001G091400 Sobic001G452000--Sobic001G091400 Sobic008G084700 Sobic008G084700 Sobic001G452000--Sobic008G084700 Sobic001G452000--Sobic002G260400
Octagon: transcription factors


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