Gene annotation
Transcriptome id Sobic.005G036800.1
Synonym Sb05g003090
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
calmodulin-binding protein, putative, expressed
UniProt C5Y4N2
Pfam -
Panther DB PTHR31250 PTHR31250:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G52870 : IQ calmodulin-binding motif family protein
RAP-DB (Rice) LOC_Os12g05420.1 : calmodulin-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a013018 , Zm00025a033480 , Zm00025a040455
Brachypodium KQJ92263
Barley HORVU5Hr1G041930.8 , HORVU5Hr1G041930.3 , HORVU5Hr1G041930.13 , HORVU5Hr1G041930.10 , HORVU5Hr1G041930.11 , HORVU5Hr1G041930.18 , HORVU5Hr1G041930.19 , HORVU5Hr1G041930.12 , HORVU6Hr1G019510.4 , HORVU6Hr1G019510.5 , HORVU6Hr1G019510.6 , HORVU6Hr1G019510.7 , HORVU6Hr1G019510.1 , HORVU6Hr1G019510.2 , HORVU6Hr1G019510.3 , HORVU5Hr1G041930.16 , HORVU6Hr1G019510.8 , HORVU6Hr1G019510.9 , HORVU5Hr1G041930.17 , HORVU5Hr1G041930.15 , HORVU6Hr1G019510.12 , HORVU6Hr1G019510.13 , HORVU6Hr1G019510.10 , HORVU6Hr1G019510.11 , HORVU5Hr1G041930.23 , HORVU5Hr1G041930.22 , HORVU5Hr1G041930.20 , HORVU5Hr1G041930.26 , HORVU5Hr1G041930.25 , HORVU5Hr1G041930.24
Wheat TraesCS6D02G097300 , TraesCS5D02G137100 , TraesCS5B02G128200 , TraesCS6B02G137500 , TraesCS6B02G137500 , TraesCS6B02G133900 , TraesCS6D02G093400 , TraesCS5A02G129600 , TraesCS6A02G108900
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G048500 acyl-protein thioesterase, putative, expressed K06130: lysophospholipase II
2 Sobic.009G229200 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA19 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
3 Sobic.003G421201 - K00844: hexokinase
4 Sobic.004G279100 CAMK_CAMK_like.15 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
5 Sobic.003G316700 katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed K18643: katanin p80 WD40 repeat-containing subunit B1
6 Sobic.001G076400 H-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
7 Sobic.001G391600 plant neutral invertase domain containing protein, expressed -
8 Sobic.009G195900 OsFBT9 - F-box and tubby domain containing protein, expressed -
9 Sobic.003G113800 CGMC_GSK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K03083: glycogen synthase kinase 3 beta
K00924: kinase
10 Sobic.007G032300 expressed protein -
11 Sobic.005G026100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydroxymethylglutaryl-CoA lyase, putative, expressed K01640: E4.1.3.4, HMGCL, hydroxymethylglutaryl-CoA lyase
12 Sobic.004G283700 OsFBX58 - F-box domain containing protein, expressed -
13 Sobic.010G016900 calcium-dependent protein kinase isoform AK1, putative, expressed K13412: calcium-dependent protein kinase
14 Sobic.009G234300 CGMC_MAPKCMGC_2.8 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
15 Sobic.003G264200 Ser/Thr protein phosphatase family protein, putative, expressed K15498: serine/threonine-protein phosphatase 6 catalytic subunit
16 Sobic.004G334000 similar to Putative uncharacterized protein(PubMedID : 29862293)@monogalactosyldiacylglycerol synthase, putative, expressed K03715: 1,2-diacylglycerol 3-beta-galactosyltransferase
17 Sobic.001G067200 expressed protein -
18 Sobic.003G010400 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
19 Sobic.002G257200 uridine/cytidine kinase-like 1, putative, expressed K00876: udk, uridine kinase
20 Sobic.001G422700 "similar to Zinc finger family protein, putative, expressed"(PubMedID : 29862293)@Salt and drought-induced ring finger 1(PubMedID : 26320239)@zinc finger, C3HC4 type domain containing protein, expressed K16283: E3 ubiquitin-protein ligase SDIR1


Gene co-expression network
sample Sobic005G036800 Sobic005G036800 Sobic003G048500 Sobic003G048500 Sobic005G036800--Sobic003G048500 Sobic009G229200 Sobic009G229200 Sobic005G036800--Sobic009G229200 Sobic003G421201 Sobic003G421201 Sobic005G036800--Sobic003G421201 Sobic004G279100 Sobic004G279100 Sobic005G036800--Sobic004G279100 Sobic003G316700 Sobic003G316700 Sobic005G036800--Sobic003G316700 Sobic001G076400 Sobic001G076400 Sobic005G036800--Sobic001G076400 Sobic001G391600 Sobic001G391600 Sobic005G036800--Sobic001G391600 Sobic009G195900 Sobic009G195900 Sobic005G036800--Sobic009G195900 Sobic003G113800 Sobic003G113800 Sobic005G036800--Sobic003G113800 Sobic001G048100 Sobic001G048100 Sobic003G048500--Sobic001G048100 Sobic001G031100 Sobic001G031100 Sobic003G048500--Sobic001G031100 Sobic001G530500 Sobic001G530500 Sobic003G048500--Sobic001G530500 Sobic002G288200 Sobic002G288200 Sobic003G048500--Sobic002G288200 Sobic003G264200 Sobic003G264200 Sobic003G048500--Sobic003G264200 Sobic003G048500--Sobic009G229200 Sobic003G010400 Sobic003G010400 Sobic003G048500--Sobic003G010400 Sobic003G327100 Sobic003G327100 Sobic003G048500--Sobic003G327100 Sobic010G092300 Sobic010G092300 Sobic003G048500--Sobic010G092300 Sobic002G134001 Sobic002G134001 Sobic009G229200--Sobic002G134001 Sobic004G203400 Sobic004G203400 Sobic009G229200--Sobic004G203400 Sobic009G229200--Sobic003G264200 Sobic009G165800 Sobic009G165800 Sobic009G229200--Sobic009G165800 Sobic009G229200--Sobic001G391600 Sobic009G005900 Sobic009G005900 Sobic009G229200--Sobic009G005900 Sobic004G130100 Sobic004G130100 Sobic009G229200--Sobic004G130100 Sobic009G229200--Sobic003G010400 Sobic009G174900 Sobic009G174900 Sobic009G229200--Sobic009G174900 Sobic002G257200 Sobic002G257200 Sobic003G421201--Sobic002G257200 Sobic003G421201--Sobic005G036800 Sobic003G384300 Sobic003G384300 Sobic003G421201--Sobic003G384300 Sobic002G390300 Sobic002G390300 Sobic003G421201--Sobic002G390300 Sobic003G421201--Sobic004G279100 Sobic009G015700 Sobic009G015700 Sobic003G421201--Sobic009G015700 Sobic010G054000 Sobic010G054000 Sobic003G421201--Sobic010G054000 Sobic001G422700 Sobic001G422700 Sobic003G421201--Sobic001G422700 Sobic003G421201--Sobic003G316700 Sobic004G279100--Sobic003G113800 Sobic006G156300 Sobic006G156300 Sobic004G279100--Sobic006G156300 Sobic002G134600 Sobic002G134600 Sobic004G279100--Sobic002G134600 Sobic002G235300 Sobic002G235300 Sobic004G279100--Sobic002G235300 Sobic010G009800 Sobic010G009800 Sobic004G279100--Sobic010G009800 Sobic004G279100--Sobic003G316700 Sobic007G165900 Sobic007G165900 Sobic004G279100--Sobic007G165900 Sobic004G279100--Sobic005G036800 Sobic004G279100--Sobic002G257200 Sobic001G386300 Sobic001G386300 Sobic003G316700--Sobic001G386300 Sobic001G425800 Sobic001G425800 Sobic003G316700--Sobic001G425800 Sobic003G316700--Sobic001G031100 Sobic002G358400 Sobic002G358400 Sobic003G316700--Sobic002G358400 Sobic001G332500 Sobic001G332500 Sobic003G316700--Sobic001G332500 Sobic003G316700--Sobic002G257200 Sobic004G146800 Sobic004G146800 Sobic003G316700--Sobic004G146800 Sobic003G316700--Sobic004G203400 Sobic009G200800 Sobic009G200800 Sobic003G316700--Sobic009G200800 Sobic001G261545 Sobic001G261545 Sobic001G076400--Sobic001G261545 Sobic009G103000 Sobic009G103000 Sobic001G076400--Sobic009G103000 Sobic007G010800 Sobic007G010800 Sobic001G076400--Sobic007G010800 Sobic002G138100 Sobic002G138100 Sobic001G076400--Sobic002G138100 Sobic005G132000 Sobic005G132000 Sobic001G076400--Sobic005G132000 Sobic006G233700 Sobic006G233700 Sobic001G076400--Sobic006G233700 Sobic008G077500 Sobic008G077500 Sobic001G076400--Sobic008G077500 Sobic003G003450 Sobic003G003450 Sobic001G076400--Sobic003G003450 Sobic006G232600 Sobic006G232600 Sobic001G076400--Sobic006G232600 Sobic001G391600--Sobic009G165800 Sobic010G083700 Sobic010G083700 Sobic001G391600--Sobic010G083700 Sobic001G105500 Sobic001G105500 Sobic001G391600--Sobic001G105500 Sobic009G193400 Sobic009G193400 Sobic001G391600--Sobic009G193400 Sobic007G019800 Sobic007G019800 Sobic001G391600--Sobic007G019800 Sobic003G226500 Sobic003G226500 Sobic001G391600--Sobic003G226500 Sobic004G079100 Sobic004G079100 Sobic001G391600--Sobic004G079100 Sobic002G129000 Sobic002G129000 Sobic001G391600--Sobic002G129000 Sobic004G104900 Sobic004G104900 Sobic001G391600--Sobic004G104900 Sobic008G188700 Sobic008G188700 Sobic009G195900--Sobic008G188700 Sobic008G016900 Sobic008G016900 Sobic009G195900--Sobic008G016900 Sobic007G178200 Sobic007G178200 Sobic009G195900--Sobic007G178200 Sobic004G257300 Sobic004G257300 Sobic009G195900--Sobic004G257300 Sobic002G330300 Sobic002G330300 Sobic009G195900--Sobic002G330300 Sobic002G124700 Sobic002G124700 Sobic009G195900--Sobic002G124700 Sobic001G416600 Sobic001G416600 Sobic009G195900--Sobic001G416600 Sobic002G270700 Sobic002G270700 Sobic009G195900--Sobic002G270700 Sobic001G217000 Sobic001G217000 Sobic009G195900--Sobic001G217000 Sobic006G280500 Sobic006G280500 Sobic003G113800--Sobic006G280500 Sobic003G293300 Sobic003G293300 Sobic003G113800--Sobic003G293300 Sobic003G113800--Sobic004G279100 Sobic001G234200 Sobic001G234200 Sobic003G113800--Sobic001G234200 Sobic002G071000 Sobic002G071000 Sobic003G113800--Sobic002G071000 Sobic006G049700 Sobic006G049700 Sobic003G113800--Sobic006G049700 Sobic003G113800--Sobic002G235300 Sobic001G459100 Sobic001G459100 Sobic003G113800--Sobic001G459100 Sobic002G083900 Sobic002G083900 Sobic003G113800--Sobic002G083900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.