Gene annotation
Transcriptome id Sobic.005G095700.1
Synonym St1A;St1A;St1A, RPM1, R gene homologue, RPS3, Sb05g008280
Functional annotation Up-regulated in Setosphaeria turcica resistant genotype GA06/18 when S. turcica is inoculated (PubMedID : 22050783)
"belonged to one of the 20 ancestral gene families identified across sorghum, maize and rice, including the maize orthologue which was found to have upregulated transcripts after fungal challenge of Setosphaeria turcica" (PubMedID : 25928459)
Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32 (PubMedID : 28624908)
NB-ARC domain containing protein, expressed
UniProt C5Y1K1 , Q9M6L0
Pfam PF00931
Panther DB PTHR23155 PTHR23155:SF624
NCBI CDD KOG4658; Apoptotic ATPase
KEGG Orthology K13457; RPM1, disease resistance protein RPM1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G07040 : NB-ARC domain-containing disease resistance protein
RAP-DB (Rice) LOC_Os11g11990.1 : NB-ARC domain containing protein, expressed
MaizeGDB (Corn) Zm00025a033933 , Zm00025a033927
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G191900 transporter family protein, putative, expressed -
2 Sobic.008G028700 SET domain containing protein, expressed -
3 Sobic.001G219600 importin-beta N-terminal domain containing protein, expressed K15436: TRPO3, transportin-3
4 Sobic.001G071400 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
5 Sobic.009G260500 tetratricopeptide repeat containing protein, putative, expressed K14408: CSTF3, cleavage stimulation factor subunit 3
6 Sobic.004G009600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
7 Sobic.009G166100 PWWP domain containing protein, expressed -
8 Sobic.010G209400 WD domain, G-beta repeat domain containing protein, expressed K03130: transcription initiation factor TFIID subunit 5
9 Sobic.001G363500 DIRP family protein, putative, expressed -
10 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
11 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
12 Sobic.009G088000 expressed protein -
13 Sobic.010G065300 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
14 Sobic.005G200900 SCC3, putative, expressed K06671: STAG1_2, SCC3, cohesin complex subunit SA-1/2
15 Sobic.004G145500 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
16 Sobic.002G397500 SAC3/GANP family protein, expressed -
17 Sobic.004G048800 - K12599: SKI2, antiviral helicase SKI2
18 Sobic.009G177500 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
19 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
20 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11


Gene co-expression network
sample Sobic005G095700 Sobic005G095700 Sobic005G191900 Sobic005G191900 Sobic005G095700--Sobic005G191900 Sobic008G028700 Sobic008G028700 Sobic005G095700--Sobic008G028700 Sobic001G219600 Sobic001G219600 Sobic005G095700--Sobic001G219600 Sobic001G071400 Sobic001G071400 Sobic005G095700--Sobic001G071400 Sobic009G260500 Sobic009G260500 Sobic005G095700--Sobic009G260500 Sobic004G009600 Sobic004G009600 Sobic005G095700--Sobic004G009600 Sobic009G166100 Sobic009G166100 Sobic005G095700--Sobic009G166100 Sobic010G209400 Sobic010G209400 Sobic005G095700--Sobic010G209400 Sobic001G363500 Sobic001G363500 Sobic005G095700--Sobic001G363500 Sobic001G311500 Sobic001G311500 Sobic005G191900--Sobic001G311500 Sobic005G191900--Sobic001G363500 Sobic010G094700 Sobic010G094700 Sobic005G191900--Sobic010G094700 Sobic009G247400 Sobic009G247400 Sobic005G191900--Sobic009G247400 Sobic010G112100 Sobic010G112100 Sobic005G191900--Sobic010G112100 Sobic007G157000 Sobic007G157000 Sobic005G191900--Sobic007G157000 Sobic006G118700 Sobic006G118700 Sobic005G191900--Sobic006G118700 Sobic005G191900--Sobic008G028700 Sobic008G002500 Sobic008G002500 Sobic005G191900--Sobic008G002500 Sobic010G279450 Sobic010G279450 Sobic008G028700--Sobic010G279450 Sobic009G040600 Sobic009G040600 Sobic008G028700--Sobic009G040600 Sobic008G028700--Sobic004G009600 Sobic004G258700 Sobic004G258700 Sobic008G028700--Sobic004G258700 Sobic007G065400 Sobic007G065400 Sobic008G028700--Sobic007G065400 Sobic010G139000 Sobic010G139000 Sobic008G028700--Sobic010G139000 Sobic002G006900 Sobic002G006900 Sobic008G028700--Sobic002G006900 Sobic002G145101 Sobic002G145101 Sobic008G028700--Sobic002G145101 Sobic008G113100 Sobic008G113100 Sobic008G028700--Sobic008G113100 Sobic001G219600--Sobic009G260500 Sobic002G309600 Sobic002G309600 Sobic001G219600--Sobic002G309600 Sobic002G317200 Sobic002G317200 Sobic001G219600--Sobic002G317200 Sobic009G047200 Sobic009G047200 Sobic001G219600--Sobic009G047200 Sobic003G141500 Sobic003G141500 Sobic001G219600--Sobic003G141500 Sobic001G219600--Sobic010G139000 Sobic001G219600--Sobic001G071400 Sobic002G397500 Sobic002G397500 Sobic001G219600--Sobic002G397500 Sobic001G020000 Sobic001G020000 Sobic001G219600--Sobic001G020000 Sobic002G134200 Sobic002G134200 Sobic001G071400--Sobic002G134200 Sobic001G071400--Sobic002G309600 Sobic003G280800 Sobic003G280800 Sobic001G071400--Sobic003G280800 Sobic008G047800 Sobic008G047800 Sobic001G071400--Sobic008G047800 Sobic009G191000 Sobic009G191000 Sobic001G071400--Sobic009G191000 Sobic001G071400--Sobic001G219600 Sobic005G112300 Sobic005G112300 Sobic001G071400--Sobic005G112300 Sobic002G315200 Sobic002G315200 Sobic001G071400--Sobic002G315200 Sobic002G008900 Sobic002G008900 Sobic001G071400--Sobic002G008900 Sobic009G260500--Sobic001G219600 Sobic009G260500--Sobic004G009600 Sobic010G277500 Sobic010G277500 Sobic009G260500--Sobic010G277500 Sobic008G009700 Sobic008G009700 Sobic009G260500--Sobic008G009700 Sobic009G260500--Sobic010G139000 Sobic009G260500--Sobic008G028700 Sobic009G260500--Sobic009G040600 Sobic009G260500--Sobic002G309600 Sobic009G260500--Sobic001G311500 Sobic004G009600--Sobic009G040600 Sobic004G009600--Sobic008G028700 Sobic004G009600--Sobic009G260500 Sobic004G009600--Sobic010G279450 Sobic004G009600--Sobic002G309600 Sobic007G117400 Sobic007G117400 Sobic004G009600--Sobic007G117400 Sobic003G293200 Sobic003G293200 Sobic004G009600--Sobic003G293200 Sobic004G009600--Sobic001G363500 Sobic004G009600--Sobic010G277500 Sobic009G166100--Sobic003G293200 Sobic009G166100--Sobic004G009600 Sobic007G031600 Sobic007G031600 Sobic009G166100--Sobic007G031600 Sobic010G001100 Sobic010G001100 Sobic009G166100--Sobic010G001100 Sobic001G542700 Sobic001G542700 Sobic009G166100--Sobic001G542700 Sobic001G111600 Sobic001G111600 Sobic009G166100--Sobic001G111600 Sobic009G166100--Sobic007G117400 Sobic010G069100 Sobic010G069100 Sobic009G166100--Sobic010G069100 Sobic010G065300 Sobic010G065300 Sobic009G166100--Sobic010G065300 Sobic010G236400 Sobic010G236400 Sobic010G209400--Sobic010G236400 Sobic004G084300 Sobic004G084300 Sobic010G209400--Sobic004G084300 Sobic009G210500 Sobic009G210500 Sobic010G209400--Sobic009G210500 Sobic001G511500 Sobic001G511500 Sobic010G209400--Sobic001G511500 Sobic010G209400--Sobic001G542700 Sobic010G209400--Sobic009G040600 Sobic003G038500 Sobic003G038500 Sobic010G209400--Sobic003G038500 Sobic008G131000 Sobic008G131000 Sobic010G209400--Sobic008G131000 Sobic010G209400--Sobic008G047800 Sobic001G363500--Sobic005G112300 Sobic007G062800 Sobic007G062800 Sobic001G363500--Sobic007G062800 Sobic010G247800 Sobic010G247800 Sobic001G363500--Sobic010G247800 Sobic002G299700 Sobic002G299700 Sobic001G363500--Sobic002G299700 Sobic001G363500--Sobic010G112100 Sobic004G242400 Sobic004G242400 Sobic001G363500--Sobic004G242400 Sobic001G433800 Sobic001G433800 Sobic001G363500--Sobic001G433800 Sobic001G363500--Sobic010G279450 Sobic001G363500--Sobic010G139000
Octagon: transcription factors


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