Gene annotation
Transcriptome id Sobic.005G124200.1
Synonym Sb05g018443
Functional annotation ATP binding protein, putative, expressed
UniProt A0A1B6PS16
Pfam -
Panther DB PTHR32387 PTHR32387:SF3
NCBI CDD -
KEGG Orthology K17592; sacsin
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G48770 : DNA binding;ATP binding
RAP-DB (Rice) LOC_Os11g31480.1 : ATP binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a015753
Brachypodium -
Barley HORVU5Hr1G085220.28 , HORVU5Hr1G085220.27 , HORVU5Hr1G085220.26 , HORVU5Hr1G085220.25 , HORVU5Hr1G085220.24 , HORVU5Hr1G085220.39 , HORVU5Hr1G085220.35 , HORVU5Hr1G085220.36 , HORVU5Hr1G085220.37 , HORVU5Hr1G085220.30
Wheat TraesCS2A02G479300 , TraesCS5B02G338300 , TraesCS2B02G503700 , TraesCS5A02G339700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G205200 Ser/Thr protein phosphatase family protein, putative, expressed -
2 Sobic.001G359500 cytochrome P450, putative, expressed -
3 Sobic.006G157600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Thireodoxin family protein (Os)(PubMedID : 27208977)@thioredoxin, putative, expressed K03671: thioredoxin 1
4 Sobic.003G428400 beta-galactosidase, putative, expressed K01190: beta-galactosidase
5 Sobic.001G504900 pheophorbide a oxygenase, chloroplast precursor, putative, expressed K13071: PAO, pheophorbide a oxygenase
6 Sobic.010G203200 protein kinase domain containing protein, expressed -
7 Sobic.001G245000 PPR repeat domain containing protein, putative, expressed -
8 Sobic.004G063400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@GDU1, putative, expressed -
9 Sobic.009G072700 O-acyltransferase, putative, expressed K11155: diacylglycerol O-acyltransferase 1
10 Sobic.001G438600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dihydrodipicolinate reductase, putative, expressed K00215: 4-hydroxy-tetrahydrodipicolinate reductase
11 Sobic.009G207600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@dnaJ domain containing protein, expressed -
12 Sobic.001G282600 transporter family protein, putative, expressed -
13 Sobic.007G186200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@solute carrier family 35 member F1, putative, expressed K15287: solute carrier family 35, member F1/2
14 Sobic.006G028900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed -
15 Sobic.001G274800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
16 Sobic.004G261900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@diacylglycerol O-acyltransferase, putative, expressed K14457: MOGAT2, 2-acylglycerol O-acyltransferase 2
17 Sobic.007G092700 - -
18 Sobic.006G181300 Polyphenol oxidas(PubMedID : 28818380)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@polyphenol oxidase, putative, expressed K00422: polyphenol oxidase
19 Sobic.001G301700 MYB family transcription factor, putative, expressed K09522: DnaJ homolog subfamily C member 2
20 Sobic.002G426300 actin, putative, expressed K17260: ACTR2, actin-related protein 2


Gene co-expression network
sample Sobic005G124200 Sobic005G124200 Sobic010G205200 Sobic010G205200 Sobic005G124200--Sobic010G205200 Sobic001G359500 Sobic001G359500 Sobic005G124200--Sobic001G359500 Sobic006G157600 Sobic006G157600 Sobic005G124200--Sobic006G157600 Sobic003G428400 Sobic003G428400 Sobic005G124200--Sobic003G428400 Sobic001G504900 Sobic001G504900 Sobic005G124200--Sobic001G504900 Sobic010G203200 Sobic010G203200 Sobic005G124200--Sobic010G203200 Sobic001G245000 Sobic001G245000 Sobic005G124200--Sobic001G245000 Sobic004G063400 Sobic004G063400 Sobic005G124200--Sobic004G063400 Sobic009G072700 Sobic009G072700 Sobic005G124200--Sobic009G072700 Sobic010G205200--Sobic003G428400 Sobic001G069900 Sobic001G069900 Sobic010G205200--Sobic001G069900 Sobic006G028900 Sobic006G028900 Sobic010G205200--Sobic006G028900 Sobic010G112300 Sobic010G112300 Sobic010G205200--Sobic010G112300 Sobic001G015500 Sobic001G015500 Sobic010G205200--Sobic001G015500 Sobic001G301700 Sobic001G301700 Sobic010G205200--Sobic001G301700 Sobic001G474500 Sobic001G474500 Sobic010G205200--Sobic001G474500 Sobic001G325200 Sobic001G325200 Sobic010G205200--Sobic001G325200 Sobic007G186200 Sobic007G186200 Sobic010G205200--Sobic007G186200 Sobic006G181300 Sobic006G181300 Sobic001G359500--Sobic006G181300 Sobic002G338100 Sobic002G338100 Sobic001G359500--Sobic002G338100 Sobic001G359500--Sobic001G504900 Sobic009G207600 Sobic009G207600 Sobic001G359500--Sobic009G207600 Sobic001G176600 Sobic001G176600 Sobic001G359500--Sobic001G176600 Sobic009G226600 Sobic009G226600 Sobic001G359500--Sobic009G226600 Sobic007G034000 Sobic007G034000 Sobic001G359500--Sobic007G034000 Sobic008G074400 Sobic008G074400 Sobic001G359500--Sobic008G074400 Sobic001G359500--Sobic010G205200 Sobic006G157600--Sobic010G205200 Sobic006G157600--Sobic006G028900 Sobic001G130000 Sobic001G130000 Sobic006G157600--Sobic001G130000 Sobic006G157600--Sobic001G474500 Sobic009G034700 Sobic009G034700 Sobic006G157600--Sobic009G034700 Sobic006G028100 Sobic006G028100 Sobic006G157600--Sobic006G028100 Sobic006G157600--Sobic001G069900 Sobic001G274800 Sobic001G274800 Sobic006G157600--Sobic001G274800 Sobic006G157600--Sobic001G301700 Sobic007G068100 Sobic007G068100 Sobic003G428400--Sobic007G068100 Sobic003G428400--Sobic001G474500 Sobic003G428400--Sobic001G325200 Sobic003G428400--Sobic001G015500 Sobic003G428400--Sobic010G205200 Sobic003G428400--Sobic001G069900 Sobic009G057300 Sobic009G057300 Sobic003G428400--Sobic009G057300 Sobic001G438600 Sobic001G438600 Sobic003G428400--Sobic001G438600 Sobic003G428400--Sobic010G112300 Sobic001G504900--Sobic009G207600 Sobic003G398100 Sobic003G398100 Sobic001G504900--Sobic003G398100 Sobic004G261900 Sobic004G261900 Sobic001G504900--Sobic004G261900 Sobic005G149700 Sobic005G149700 Sobic001G504900--Sobic005G149700 Sobic002G266000 Sobic002G266000 Sobic001G504900--Sobic002G266000 Sobic001G504900--Sobic002G338100 Sobic001G504900--Sobic001G069900 Sobic001G504900--Sobic006G181300 Sobic001G504900--Sobic001G015500 Sobic001G207400 Sobic001G207400 Sobic010G203200--Sobic001G207400 Sobic003G322700 Sobic003G322700 Sobic010G203200--Sobic003G322700 Sobic001G282600 Sobic001G282600 Sobic010G203200--Sobic001G282600 Sobic010G203200--Sobic002G266000 Sobic002G430000 Sobic002G430000 Sobic010G203200--Sobic002G430000 Sobic004G355000 Sobic004G355000 Sobic010G203200--Sobic004G355000 Sobic004G124200 Sobic004G124200 Sobic010G203200--Sobic004G124200 Sobic010G001500 Sobic010G001500 Sobic010G203200--Sobic010G001500 Sobic007G004500 Sobic007G004500 Sobic010G203200--Sobic007G004500 Sobic003G312100 Sobic003G312100 Sobic001G245000--Sobic003G312100 Sobic010G148932 Sobic010G148932 Sobic001G245000--Sobic010G148932 Sobic002G399800 Sobic002G399800 Sobic001G245000--Sobic002G399800 Sobic002G042600 Sobic002G042600 Sobic001G245000--Sobic002G042600 Sobic008G098300 Sobic008G098300 Sobic001G245000--Sobic008G098300 Sobic001G037100 Sobic001G037100 Sobic001G245000--Sobic001G037100 Sobic003G229500 Sobic003G229500 Sobic001G245000--Sobic003G229500 Sobic001G453000 Sobic001G453000 Sobic001G245000--Sobic001G453000 Sobic004G319900 Sobic004G319900 Sobic001G245000--Sobic004G319900 Sobic004G063400--Sobic001G504900 Sobic002G130000 Sobic002G130000 Sobic004G063400--Sobic002G130000 Sobic004G063400--Sobic009G034700 Sobic008G079300 Sobic008G079300 Sobic004G063400--Sobic008G079300 Sobic004G063400--Sobic009G207600 Sobic005G178100 Sobic005G178100 Sobic004G063400--Sobic005G178100 Sobic004G063400--Sobic001G069900 Sobic004G063400--Sobic001G015500 Sobic004G063400--Sobic006G181300 Sobic010G064600 Sobic010G064600 Sobic009G072700--Sobic010G064600 Sobic006G260500 Sobic006G260500 Sobic009G072700--Sobic006G260500 Sobic005G177700 Sobic005G177700 Sobic009G072700--Sobic005G177700 Sobic008G093000 Sobic008G093000 Sobic009G072700--Sobic008G093000 Sobic007G075500 Sobic007G075500 Sobic009G072700--Sobic007G075500 Sobic009G072700--Sobic001G301700 Sobic010G261600 Sobic010G261600 Sobic009G072700--Sobic010G261600 Sobic003G365300 Sobic003G365300 Sobic009G072700--Sobic003G365300 Sobic004G228800 Sobic004G228800 Sobic009G072700--Sobic004G228800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.