Gene annotation
Transcriptome id Sobic.001G245000.1
Synonym Sb01g021710
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt C5X1H7
Pfam PF13812 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF528
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G03100 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os10g28665.2 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a017772
Brachypodium PNT67400
Barley HORVU4Hr1G087570.9 , HORVU4Hr1G087570.8 , HORVU4Hr1G087570.3 , HORVU4Hr1G087570.2 , HORVU4Hr1G087570.1 , HORVU4Hr1G087570.7 , HORVU4Hr1G087570.6 , HORVU4Hr1G087570.5 , HORVU4Hr1G087570.4 , HORVU4Hr1G087570.19 , HORVU4Hr1G087570.18 , HORVU4Hr1G087570.13 , HORVU4Hr1G087570.12 , HORVU4Hr1G087570.11 , HORVU4Hr1G087570.17 , HORVU4Hr1G087570.16 , HORVU4Hr1G087570.15 , HORVU4Hr1G087570.14 , HORVU4Hr1G087570.39 , HORVU4Hr1G087570.38 , HORVU4Hr1G087570.35 , HORVU4Hr1G087570.34 , HORVU4Hr1G087570.37 , HORVU4Hr1G087570.36 , HORVU4Hr1G087570.31 , HORVU4Hr1G087570.30 , HORVU4Hr1G087570.33 , HORVU4Hr1G087570.32 , HORVU4Hr1G087570.23 , HORVU4Hr1G087570.20 , HORVU4Hr1G087570.26 , HORVU4Hr1G087570.27 , HORVU4Hr1G087570.24 , HORVU4Hr1G087570.25 , HORVU4Hr1G087570.28 , HORVU4Hr1G087570.29 , HORVU4Hr1G087570.55 , HORVU4Hr1G087570.54 , HORVU4Hr1G087570.53 , HORVU4Hr1G087570.52 , HORVU4Hr1G087570.51 , HORVU4Hr1G087570.50 , HORVU4Hr1G087570.44 , HORVU4Hr1G087570.45 , HORVU4Hr1G087570.46 , HORVU4Hr1G087570.47 , HORVU4Hr1G087570.40 , HORVU4Hr1G087570.41 , HORVU4Hr1G087570.42 , HORVU4Hr1G087570.43 , HORVU4Hr1G087570.48 , HORVU4Hr1G087570.49
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G312100 guanine nucleotide exchange family protein, putative, expressed -
2 Sobic.010G148932 - -
3 Sobic.002G399800 PWWP domain containing protein, expressed -
4 Sobic.002G042600 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
5 Sobic.008G098300 ubiquitin carboxyl-terminal hydrolase 26, putative, expressed K11858: ubiquitin carboxyl-terminal hydrolase 48
6 Sobic.001G037100 expressed protein K19026: spatacsin
7 Sobic.003G229500 ZOS12-01 - C2H2 zinc finger protein, expressed -
8 Sobic.001G453000 no apical meristem protein, putative, expressed -
9 Sobic.004G319900 expressed protein K05310: PIGG, ethanolamine phosphate transferase 2 subunit G
10 Sobic.001G065100 cullin, putative, expressed K10609: cullin 4
11 Sobic.007G019300 adaptin, putative, expressed K12397: AP-3 complex subunit beta
12 Sobic.001G393900 FAD binding domain containing protein, expressed -
13 Sobic.002G422100 EMB1011, putative, expressed K14317: NUP214, nuclear pore complex protein Nup214
14 Sobic.003G260400 ATP dependent DNA ligase family protein, putative, expressed K10747: DNA ligase 1
15 Sobic.002G179400 DNA binding protein, putative, expressed -
16 Sobic.001G050600 expressed protein -
17 Sobic.003G163200 expressed protein K11654: SMARCA5, SNF2H, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
18 Sobic.001G376900 utp14 protein, putative, expressed K14567: U3 small nucleolar RNA-associated protein 14
19 Sobic.007G062800 SET domain containing protein, expressed -
20 Sobic.001G214600 expressed protein -


Gene co-expression network
sample Sobic001G245000 Sobic001G245000 Sobic003G312100 Sobic003G312100 Sobic001G245000--Sobic003G312100 Sobic010G148932 Sobic010G148932 Sobic001G245000--Sobic010G148932 Sobic002G399800 Sobic002G399800 Sobic001G245000--Sobic002G399800 Sobic002G042600 Sobic002G042600 Sobic001G245000--Sobic002G042600 Sobic008G098300 Sobic008G098300 Sobic001G245000--Sobic008G098300 Sobic001G037100 Sobic001G037100 Sobic001G245000--Sobic001G037100 Sobic003G229500 Sobic003G229500 Sobic001G245000--Sobic003G229500 Sobic001G453000 Sobic001G453000 Sobic001G245000--Sobic001G453000 Sobic004G319900 Sobic004G319900 Sobic001G245000--Sobic004G319900 Sobic003G312100--Sobic010G148932 Sobic003G233400 Sobic003G233400 Sobic003G312100--Sobic003G233400 Sobic001G137000 Sobic001G137000 Sobic003G312100--Sobic001G137000 Sobic007G019300 Sobic007G019300 Sobic003G312100--Sobic007G019300 Sobic003G072200 Sobic003G072200 Sobic003G312100--Sobic003G072200 Sobic002G397500 Sobic002G397500 Sobic003G312100--Sobic002G397500 Sobic001G004400 Sobic001G004400 Sobic003G312100--Sobic001G004400 Sobic004G248600 Sobic004G248600 Sobic003G312100--Sobic004G248600 Sobic002G396500 Sobic002G396500 Sobic003G312100--Sobic002G396500 Sobic010G148932--Sobic003G312100 Sobic010G148932--Sobic002G042600 Sobic010G148932--Sobic003G229500 Sobic010G148932--Sobic002G397500 Sobic008G098900 Sobic008G098900 Sobic010G148932--Sobic008G098900 Sobic001G117200 Sobic001G117200 Sobic010G148932--Sobic001G117200 Sobic010G148932--Sobic001G137000 Sobic007G062800 Sobic007G062800 Sobic010G148932--Sobic007G062800 Sobic001G457900 Sobic001G457900 Sobic010G148932--Sobic001G457900 Sobic003G095900 Sobic003G095900 Sobic002G399800--Sobic003G095900 Sobic003G260400 Sobic003G260400 Sobic002G399800--Sobic003G260400 Sobic010G079500 Sobic010G079500 Sobic002G399800--Sobic010G079500 Sobic002G399800--Sobic004G248600 Sobic002G179400 Sobic002G179400 Sobic002G399800--Sobic002G179400 Sobic002G133300 Sobic002G133300 Sobic002G399800--Sobic002G133300 Sobic001G089600 Sobic001G089600 Sobic002G399800--Sobic001G089600 Sobic001G393900 Sobic001G393900 Sobic002G399800--Sobic001G393900 Sobic009G109200 Sobic009G109200 Sobic002G399800--Sobic009G109200 Sobic001G065100 Sobic001G065100 Sobic002G042600--Sobic001G065100 Sobic006G184900 Sobic006G184900 Sobic002G042600--Sobic006G184900 Sobic002G042600--Sobic008G098900 Sobic002G401500 Sobic002G401500 Sobic002G042600--Sobic002G401500 Sobic002G042600--Sobic002G179400 Sobic004G322400 Sobic004G322400 Sobic002G042600--Sobic004G322400 Sobic002G429300 Sobic002G429300 Sobic002G042600--Sobic002G429300 Sobic008G088872 Sobic008G088872 Sobic002G042600--Sobic008G088872 Sobic001G370900 Sobic001G370900 Sobic002G042600--Sobic001G370900 Sobic004G048800 Sobic004G048800 Sobic008G098300--Sobic004G048800 Sobic001G363500 Sobic001G363500 Sobic008G098300--Sobic001G363500 Sobic010G001100 Sobic010G001100 Sobic008G098300--Sobic010G001100 Sobic001G433800 Sobic001G433800 Sobic008G098300--Sobic001G433800 Sobic008G098300--Sobic003G072200 Sobic008G098300--Sobic007G062800 Sobic005G112300 Sobic005G112300 Sobic008G098300--Sobic005G112300 Sobic006G040500 Sobic006G040500 Sobic008G098300--Sobic006G040500 Sobic003G360400 Sobic003G360400 Sobic008G098300--Sobic003G360400 Sobic001G050600 Sobic001G050600 Sobic001G037100--Sobic001G050600 Sobic001G037100--Sobic001G117200 Sobic001G037100--Sobic007G062800 Sobic001G037100--Sobic003G229500 Sobic001G540400 Sobic001G540400 Sobic001G037100--Sobic001G540400 Sobic001G280900 Sobic001G280900 Sobic001G037100--Sobic001G280900 Sobic007G098500 Sobic007G098500 Sobic001G037100--Sobic007G098500 Sobic008G092600 Sobic008G092600 Sobic001G037100--Sobic008G092600 Sobic001G058700 Sobic001G058700 Sobic001G037100--Sobic001G058700 Sobic008G132600 Sobic008G132600 Sobic003G229500--Sobic008G132600 Sobic003G229500--Sobic007G062800 Sobic003G101400 Sobic003G101400 Sobic003G229500--Sobic003G101400 Sobic001G196500 Sobic001G196500 Sobic003G229500--Sobic001G196500 Sobic003G229500--Sobic002G042600 Sobic003G229500--Sobic001G363500 Sobic001G347500 Sobic001G347500 Sobic003G229500--Sobic001G347500 Sobic003G229500--Sobic003G072200 Sobic003G229500--Sobic001G540400 Sobic007G168300 Sobic007G168300 Sobic001G453000--Sobic007G168300 Sobic003G294600 Sobic003G294600 Sobic001G453000--Sobic003G294600 Sobic009G142000 Sobic009G142000 Sobic001G453000--Sobic009G142000 Sobic003G042400 Sobic003G042400 Sobic001G453000--Sobic003G042400 Sobic007G155500 Sobic007G155500 Sobic001G453000--Sobic007G155500 Sobic001G453000--Sobic002G396500 Sobic004G085000 Sobic004G085000 Sobic001G453000--Sobic004G085000 Sobic001G453000--Sobic002G179400 Sobic010G114900 Sobic010G114900 Sobic001G453000--Sobic010G114900 Sobic004G319900--Sobic003G312100 Sobic004G319900--Sobic006G040500 Sobic004G319900--Sobic010G148932 Sobic004G319900--Sobic003G072200 Sobic004G319900--Sobic002G397500 Sobic004G319900--Sobic008G088872 Sobic004G319900--Sobic007G062800 Sobic003G186000 Sobic003G186000 Sobic004G319900--Sobic003G186000 Sobic004G005100 Sobic004G005100 Sobic004G319900--Sobic004G005100
Octagon: transcription factors


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