Gene annotation
Transcriptome id Sobic.005G175800.1
Synonym Sb05g023540
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
EF hand family protein, putative
UniProt C5Y5T2
Pfam PF13499
Panther DB PTHR10891 PTHR10891:SF574
NCBI CDD KOG0027; Calmodulin and related proteins (EF-Hand superfamily)
KEGG Orthology K02183; calmodulin
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G39670 : Calcium-binding EF-hand family protein
RAP-DB (Rice) LOC_Os11g38780.1 : EF hand family protein, putative
MaizeGDB (Corn) Zm00025a029446
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G318200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, N-terminal domain containing protein, expressed K00799: GST, glutathione S-transferase
2 Sobic.005G228700 metallothionein, putative, expressed -
3 Sobic.007G194700 phosphoribulokinase/Uridine kinase family protein, expressed K00876: udk, uridine kinase
4 Sobic.005G182500 jacalin-like lectin domain containing protein, expressed -
5 Sobic.010G247300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AAA ATPase, putative, expressed K08900: mitochondrial chaperone BCS1
6 Sobic.008G060100 - -
7 Sobic.005G037300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter, major facilitator family, putative, expressed -
8 Sobic.004G236300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@shikimate kinase, putative, expressed K00891: aroK, shikimate kinase
9 Sobic.010G102050 - -
10 Sobic.003G336000 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed K15633: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
11 Sobic.001G123700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.010G155300 VQ domain containing protein, putative, expressed -
13 Sobic.001G353600 expressed protein -
14 Sobic.005G016500 DUF567 domain containing protein, putative, expressed -
15 Sobic.002G255200 BHLH transcription factor, putative, expressed -
16 Sobic.004G017800 ubiquitin-conjugating enzyme 28(PubMedID : 26465154)@ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
17 Sobic.004G182300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MLO domain containing protein, putative, expressed K08472: mlo protein
18 Sobic.007G115500 plant protein of unknown function domain containing protein, expressed -
19 Sobic.001G355600 helix-loop-helix DNA-binding domain containing protein, expressed -
20 Sobic.001G087900 expressed protein -


Gene co-expression network
sample Sobic005G175800 Sobic005G175800 Sobic001G318200 Sobic001G318200 Sobic005G175800--Sobic001G318200 Sobic005G228700 Sobic005G228700 Sobic005G175800--Sobic005G228700 Sobic007G194700 Sobic007G194700 Sobic005G175800--Sobic007G194700 Sobic005G182500 Sobic005G182500 Sobic005G175800--Sobic005G182500 Sobic010G247300 Sobic010G247300 Sobic005G175800--Sobic010G247300 Sobic008G060100 Sobic008G060100 Sobic005G175800--Sobic008G060100 Sobic005G037300 Sobic005G037300 Sobic005G175800--Sobic005G037300 Sobic004G236300 Sobic004G236300 Sobic005G175800--Sobic004G236300 Sobic010G102050 Sobic010G102050 Sobic005G175800--Sobic010G102050 Sobic010G102150 Sobic010G102150 Sobic001G318200--Sobic010G102150 Sobic007G115500 Sobic007G115500 Sobic001G318200--Sobic007G115500 Sobic001G059400 Sobic001G059400 Sobic001G318200--Sobic001G059400 Sobic010G155300 Sobic010G155300 Sobic001G318200--Sobic010G155300 Sobic005G080200 Sobic005G080200 Sobic001G318200--Sobic005G080200 Sobic004G195000 Sobic004G195000 Sobic001G318200--Sobic004G195000 Sobic001G318200--Sobic005G182500 Sobic003G228200 Sobic003G228200 Sobic001G318200--Sobic003G228200 Sobic010G075600 Sobic010G075600 Sobic001G318200--Sobic010G075600 Sobic001G219300 Sobic001G219300 Sobic005G228700--Sobic001G219300 Sobic004G247000 Sobic004G247000 Sobic005G228700--Sobic004G247000 Sobic003G055700 Sobic003G055700 Sobic005G228700--Sobic003G055700 Sobic001G048200 Sobic001G048200 Sobic005G228700--Sobic001G048200 Sobic002G245400 Sobic002G245400 Sobic005G228700--Sobic002G245400 Sobic009G217900 Sobic009G217900 Sobic005G228700--Sobic009G217900 Sobic004G130900 Sobic004G130900 Sobic005G228700--Sobic004G130900 Sobic001G314500 Sobic001G314500 Sobic005G228700--Sobic001G314500 Sobic002G226400 Sobic002G226400 Sobic005G228700--Sobic002G226400 Sobic009G146800 Sobic009G146800 Sobic007G194700--Sobic009G146800 Sobic007G194700--Sobic004G236300 Sobic004G272300 Sobic004G272300 Sobic007G194700--Sobic004G272300 Sobic003G075000 Sobic003G075000 Sobic007G194700--Sobic003G075000 Sobic009G198500 Sobic009G198500 Sobic007G194700--Sobic009G198500 Sobic006G100600 Sobic006G100600 Sobic007G194700--Sobic006G100600 Sobic007G194700--Sobic001G314500 Sobic001G087900 Sobic001G087900 Sobic007G194700--Sobic001G087900 Sobic004G130100 Sobic004G130100 Sobic007G194700--Sobic004G130100 Sobic008G191600 Sobic008G191600 Sobic005G182500--Sobic008G191600 Sobic005G038900 Sobic005G038900 Sobic005G182500--Sobic005G038900 Sobic002G312900 Sobic002G312900 Sobic005G182500--Sobic002G312900 Sobic004G144500 Sobic004G144500 Sobic005G182500--Sobic004G144500 Sobic009G230100 Sobic009G230100 Sobic005G182500--Sobic009G230100 Sobic003G362100 Sobic003G362100 Sobic005G182500--Sobic003G362100 Sobic008G032100 Sobic008G032100 Sobic005G182500--Sobic008G032100 Sobic004G111800 Sobic004G111800 Sobic005G182500--Sobic004G111800 Sobic005G213200 Sobic005G213200 Sobic005G182500--Sobic005G213200 Sobic010G247300--Sobic007G115500 Sobic007G058200 Sobic007G058200 Sobic010G247300--Sobic007G058200 Sobic010G247300--Sobic008G060100 Sobic010G247300--Sobic005G175800 Sobic001G108000 Sobic001G108000 Sobic010G247300--Sobic001G108000 Sobic002G415000 Sobic002G415000 Sobic010G247300--Sobic002G415000 Sobic010G247300--Sobic010G102050 Sobic004G121900 Sobic004G121900 Sobic010G247300--Sobic004G121900 Sobic001G189300 Sobic001G189300 Sobic010G247300--Sobic001G189300 Sobic004G333150 Sobic004G333150 Sobic008G060100--Sobic004G333150 Sobic004G252400 Sobic004G252400 Sobic008G060100--Sobic004G252400 Sobic003G271500 Sobic003G271500 Sobic008G060100--Sobic003G271500 Sobic001G100700 Sobic001G100700 Sobic008G060100--Sobic001G100700 Sobic009G106800 Sobic009G106800 Sobic008G060100--Sobic009G106800 Sobic008G060100--Sobic005G182500 Sobic010G079600 Sobic010G079600 Sobic008G060100--Sobic010G079600 Sobic008G060100--Sobic004G111800 Sobic003G206900 Sobic003G206900 Sobic008G060100--Sobic003G206900 Sobic001G355600 Sobic001G355600 Sobic005G037300--Sobic001G355600 Sobic003G237600 Sobic003G237600 Sobic005G037300--Sobic003G237600 Sobic005G037300--Sobic007G058200 Sobic001G189100 Sobic001G189100 Sobic005G037300--Sobic001G189100 Sobic008G106200 Sobic008G106200 Sobic005G037300--Sobic008G106200 Sobic003G428800 Sobic003G428800 Sobic005G037300--Sobic003G428800 Sobic009G222200 Sobic009G222200 Sobic005G037300--Sobic009G222200 Sobic001G098600 Sobic001G098600 Sobic005G037300--Sobic001G098600 Sobic004G236300--Sobic006G100600 Sobic004G236300--Sobic004G130100 Sobic002G255200 Sobic002G255200 Sobic004G236300--Sobic002G255200 Sobic002G355300 Sobic002G355300 Sobic004G236300--Sobic002G355300 Sobic003G337000 Sobic003G337000 Sobic004G236300--Sobic003G337000 Sobic006G232200 Sobic006G232200 Sobic004G236300--Sobic006G232200 Sobic004G055200 Sobic004G055200 Sobic004G236300--Sobic004G055200 Sobic004G136600 Sobic004G136600 Sobic004G236300--Sobic004G136600 Sobic001G388600 Sobic001G388600 Sobic004G236300--Sobic001G388600 Sobic010G102050--Sobic001G355600 Sobic010G102050--Sobic007G058200 Sobic004G245300 Sobic004G245300 Sobic010G102050--Sobic004G245300 Sobic002G195100 Sobic002G195100 Sobic010G102050--Sobic002G195100 Sobic010G102050--Sobic001G098600 Sobic010G102050--Sobic003G237600 Sobic010G102050--Sobic005G037300 Sobic010G102050--Sobic001G189100
Octagon: transcription factors


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