Gene annotation
Transcriptome id Sobic.006G027101.1
Synonym -
Functional annotation -
UniProt A0A1Z5RCN3
Pfam PF08264 PF00133
Panther DB PTHR11946 PTHR11946:SF73
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006418; tRNA aminoacylation for protein translation GO:0000166nucleotide binding GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity


Orthologs (automatic annotation)
TAIR AT4G10320 : tRNA synthetase class I (I, L, M and V) family protein
RAP-DB (Rice) LOC_Os06g43760.1 : tRNA synthetase class I, putative, expressed
MaizeGDB (Corn) Zm00025a051375 , Zm00025a042065
Brachypodium KQK16788
Barley HORVU7Hr1G115280.2 , HORVU7Hr1G115280.6 , HORVU7Hr1G115280.5 , HORVU7Hr1G115280.8 , HORVU7Hr1G115280.11 , HORVU7Hr1G115280.12 , HORVU7Hr1G115280.13 , HORVU7Hr1G115280.14 , HORVU7Hr1G115280.15 , HORVU7Hr1G115280.16 , HORVU7Hr1G115280.17 , HORVU7Hr1G115280.18 , HORVU7Hr1G115280.19 , HORVU7Hr1G115280.20 , HORVU7Hr1G115280.3
Wheat TraesCS7D02G506300 , TraesCS7D02G506300 , TraesCS7D02G506300 , TraesCS7D02G506300 , TraesCS7B02G432400 , TraesCS7B02G432400 , TraesCS7A02G516000 , TraesCS7A02G516000 , TraesCS7A02G516000 , TraesCS5A02G467900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G313500 acetyltransferase, GNAT family, putative, expressed -
2 Sobic.005G204100 kelch repeat protein, putative, expressed -
3 Sobic.002G338900 - -
4 Sobic.001G448100 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
5 Sobic.002G070000 OsFBX230 - F-box domain containing protein, expressed -
6 Sobic.006G185800 OsSub45 - Putative Subtilisin homologue, expressed -
7 Sobic.009G135300 FAR1 family protein, expressed -
8 Sobic.010G277200 zinc knuckle domain containing protein, expressed K10904: TIMELESS-interacting protein
9 Sobic.008G038200 TKL_IRAK_CR4L.1 - The CR4L subfamily has homology with Crinkly4, expressed -
10 Sobic.007G031300 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
11 Sobic.001G482300 3-ketoacyl-CoA synthase 10, putative, expressed K15397: 3-ketoacyl-CoA synthase
12 Sobic.009G141700 expressed protein -
13 Sobic.006G006500 MBTB44 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
14 Sobic.009G158900 zinc finger, C3HC4 type domain containing protein, expressed -
15 Sobic.001G043500 RNA recognition motif containing protein, putative, expressed K12876: RBM8A, RNA-binding protein 8A
16 Sobic.004G006000 hypothetical protein -
17 Sobic.005G216800 RNA recognition motif containing protein, expressed -
18 Sobic.001G187800 aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
19 Sobic.003G027800 protein kinase family protein, putative, expressed -
20 Sobic.001G523700 erythronate-4-phosphate dehydrogenase, putative, expressed -


Gene co-expression network
sample Sobic006G027101 Sobic006G027101 Sobic004G313500 Sobic004G313500 Sobic006G027101--Sobic004G313500 Sobic005G204100 Sobic005G204100 Sobic006G027101--Sobic005G204100 Sobic002G338900 Sobic002G338900 Sobic006G027101--Sobic002G338900 Sobic001G448100 Sobic001G448100 Sobic006G027101--Sobic001G448100 Sobic002G070000 Sobic002G070000 Sobic006G027101--Sobic002G070000 Sobic006G185800 Sobic006G185800 Sobic006G027101--Sobic006G185800 Sobic009G135300 Sobic009G135300 Sobic006G027101--Sobic009G135300 Sobic010G277200 Sobic010G277200 Sobic006G027101--Sobic010G277200 Sobic008G038200 Sobic008G038200 Sobic006G027101--Sobic008G038200 Sobic009G216500 Sobic009G216500 Sobic004G313500--Sobic009G216500 Sobic006G140400 Sobic006G140400 Sobic004G313500--Sobic006G140400 Sobic004G313500--Sobic001G448100 Sobic002G354700 Sobic002G354700 Sobic004G313500--Sobic002G354700 Sobic006G106200 Sobic006G106200 Sobic004G313500--Sobic006G106200 Sobic010G269300 Sobic010G269300 Sobic004G313500--Sobic010G269300 Sobic004G020900 Sobic004G020900 Sobic004G313500--Sobic004G020900 Sobic007G031300 Sobic007G031300 Sobic004G313500--Sobic007G031300 Sobic001G453500 Sobic001G453500 Sobic004G313500--Sobic001G453500 Sobic002G216600 Sobic002G216600 Sobic005G204100--Sobic002G216600 Sobic009G259500 Sobic009G259500 Sobic005G204100--Sobic009G259500 Sobic002G072700 Sobic002G072700 Sobic005G204100--Sobic002G072700 Sobic007G142900 Sobic007G142900 Sobic005G204100--Sobic007G142900 Sobic002G098500 Sobic002G098500 Sobic005G204100--Sobic002G098500 Sobic001G221900 Sobic001G221900 Sobic005G204100--Sobic001G221900 Sobic001G384700 Sobic001G384700 Sobic005G204100--Sobic001G384700 Sobic006G272500 Sobic006G272500 Sobic005G204100--Sobic006G272500 Sobic007G189400 Sobic007G189400 Sobic005G204100--Sobic007G189400 Sobic010G231600 Sobic010G231600 Sobic002G338900--Sobic010G231600 Sobic001G298800 Sobic001G298800 Sobic002G338900--Sobic001G298800 Sobic003G045700 Sobic003G045700 Sobic002G338900--Sobic003G045700 Sobic002G338900--Sobic006G027101 Sobic001G523700 Sobic001G523700 Sobic002G338900--Sobic001G523700 Sobic009G173200 Sobic009G173200 Sobic002G338900--Sobic009G173200 Sobic006G014400 Sobic006G014400 Sobic002G338900--Sobic006G014400 Sobic001G043500 Sobic001G043500 Sobic002G338900--Sobic001G043500 Sobic007G128100 Sobic007G128100 Sobic002G338900--Sobic007G128100 Sobic002G079100 Sobic002G079100 Sobic001G448100--Sobic002G079100 Sobic003G397100 Sobic003G397100 Sobic001G448100--Sobic003G397100 Sobic004G007900 Sobic004G007900 Sobic001G448100--Sobic004G007900 Sobic002G235900 Sobic002G235900 Sobic001G448100--Sobic002G235900 Sobic002G380100 Sobic002G380100 Sobic001G448100--Sobic002G380100 Sobic009G154900 Sobic009G154900 Sobic001G448100--Sobic009G154900 Sobic001G522400 Sobic001G522400 Sobic001G448100--Sobic001G522400 Sobic009G000400 Sobic009G000400 Sobic001G448100--Sobic009G000400 Sobic003G067201 Sobic003G067201 Sobic001G448100--Sobic003G067201 Sobic009G024900 Sobic009G024900 Sobic002G070000--Sobic009G024900 Sobic009G011500 Sobic009G011500 Sobic002G070000--Sobic009G011500 Sobic008G169400 Sobic008G169400 Sobic002G070000--Sobic008G169400 Sobic009G158900 Sobic009G158900 Sobic002G070000--Sobic009G158900 Sobic002G070000--Sobic001G448100 Sobic002G367300 Sobic002G367300 Sobic002G070000--Sobic002G367300 Sobic010G046400 Sobic010G046400 Sobic002G070000--Sobic010G046400 Sobic002G070000--Sobic002G216600 Sobic002G070000--Sobic005G204100 Sobic006G185800--Sobic005G204100 Sobic001G074000 Sobic001G074000 Sobic006G185800--Sobic001G074000 Sobic010G173700 Sobic010G173700 Sobic006G185800--Sobic010G173700 Sobic009G129700 Sobic009G129700 Sobic006G185800--Sobic009G129700 Sobic003G070600 Sobic003G070600 Sobic006G185800--Sobic003G070600 Sobic006G185800--Sobic001G221900 Sobic003G019900 Sobic003G019900 Sobic006G185800--Sobic003G019900 Sobic009G235700 Sobic009G235700 Sobic006G185800--Sobic009G235700 Sobic010G020600 Sobic010G020600 Sobic006G185800--Sobic010G020600 Sobic002G263300 Sobic002G263300 Sobic009G135300--Sobic002G263300 Sobic009G135300--Sobic004G007900 Sobic004G194000 Sobic004G194000 Sobic009G135300--Sobic004G194000 Sobic009G102000 Sobic009G102000 Sobic009G135300--Sobic009G102000 Sobic006G224100 Sobic006G224100 Sobic009G135300--Sobic006G224100 Sobic005G163100 Sobic005G163100 Sobic009G135300--Sobic005G163100 Sobic002G317400 Sobic002G317400 Sobic009G135300--Sobic002G317400 Sobic006G006500 Sobic006G006500 Sobic009G135300--Sobic006G006500 Sobic009G099100 Sobic009G099100 Sobic009G135300--Sobic009G099100 Sobic007G038700 Sobic007G038700 Sobic010G277200--Sobic007G038700 Sobic003G153900 Sobic003G153900 Sobic010G277200--Sobic003G153900 Sobic009G148200 Sobic009G148200 Sobic010G277200--Sobic009G148200 Sobic004G199200 Sobic004G199200 Sobic010G277200--Sobic004G199200 Sobic001G408300 Sobic001G408300 Sobic010G277200--Sobic001G408300 Sobic010G277200--Sobic008G169400 Sobic010G277200--Sobic007G031300 Sobic006G109400 Sobic006G109400 Sobic010G277200--Sobic006G109400 Sobic003G351900 Sobic003G351900 Sobic010G277200--Sobic003G351900 Sobic007G065300 Sobic007G065300 Sobic008G038200--Sobic007G065300 Sobic008G038200--Sobic002G098500 Sobic008G038200--Sobic001G298800 Sobic003G096300 Sobic003G096300 Sobic008G038200--Sobic003G096300 Sobic001G518000 Sobic001G518000 Sobic008G038200--Sobic001G518000 Sobic006G241800 Sobic006G241800 Sobic008G038200--Sobic006G241800 Sobic003G177000 Sobic003G177000 Sobic008G038200--Sobic003G177000 Sobic010G135300 Sobic010G135300 Sobic008G038200--Sobic010G135300 Sobic008G038200--Sobic007G128100
Octagon: transcription factors


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