Gene annotation
Transcriptome id Sobic.006G155000.1
Synonym MIA40, Sb06g023210
Functional annotation CHCH domain containing protein, expressed
UniProt C5YCI6
Pfam -
Panther DB PTHR21622
NCBI CDD -
KEGG Orthology K17782; MIA40, mitochondrial intermembrane space import and assembly protein 40
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G23395 : Cox19-like CHCH family protein
RAP-DB (Rice) LOC_Os04g44550.1 : CHCH domain containing protein, expressed
MaizeGDB (Corn) Zm00025a056552
Brachypodium PNT61524 , KQJ83701
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.006G155000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G111300 PIII1 - Proteinase inhibitor II family protein precursor, expressed -
2 Sobic.010G210200 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
3 Sobic.006G132500 CHIT3 - Chitinase family protein precursor, expressed K01183: chitinase
4 Sobic.010G176700 receptor-like protein kinase precursor, putative, expressed -
5 Sobic.003G442500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CESA2 - cellulose synthase, expressed -
6 Sobic.010G264700 - -
7 Sobic.003G061400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@basic helix-loop-helix, putative, expressed -
8 Sobic.005G037100 receptor-like protein kinase, putative, expressed -
9 Sobic.001G184000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
10 Sobic.009G003900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ras-related protein, putative, expressed K07874: Ras-related protein Rab-1A
11 Sobic.001G010400 snRK1-interacting protein 1, putative, expressed -
12 Sobic.001G132000 fumarylacetoacetase, putative, expressed K01557: acylpyruvate hydrolase
13 Sobic.002G113100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@membrane associated DUF588 domain containing protein, putative, expressed -
14 Sobic.005G195200 expressed protein -
15 Sobic.003G061800 glutaryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
16 Sobic.008G107500 WRKY96, expressed -
17 Sobic.002G244100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.006G054900 DUF538 domain containing protein, putative, expressed -
19 Sobic.002G113300 expressed protein -
20 Sobic.001G409200 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF260 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic006G155000 Sobic006G155000 Sobic003G111300 Sobic003G111300 Sobic006G155000--Sobic003G111300 Sobic010G210200 Sobic010G210200 Sobic006G155000--Sobic010G210200 Sobic006G132500 Sobic006G132500 Sobic006G155000--Sobic006G132500 Sobic010G176700 Sobic010G176700 Sobic006G155000--Sobic010G176700 Sobic003G442500 Sobic003G442500 Sobic006G155000--Sobic003G442500 Sobic010G264700 Sobic010G264700 Sobic006G155000--Sobic010G264700 Sobic003G061400 Sobic003G061400 Sobic006G155000--Sobic003G061400 Sobic005G037100 Sobic005G037100 Sobic006G155000--Sobic005G037100 Sobic001G184000 Sobic001G184000 Sobic006G155000--Sobic001G184000 Sobic003G111300--Sobic006G132500 Sobic003G111200 Sobic003G111200 Sobic003G111300--Sobic003G111200 Sobic004G008800 Sobic004G008800 Sobic003G111300--Sobic004G008800 Sobic003G111300--Sobic006G155000 Sobic003G111300--Sobic010G210200 Sobic002G122800 Sobic002G122800 Sobic003G111300--Sobic002G122800 Sobic003G111300--Sobic003G442500 Sobic003G111300--Sobic003G061400 Sobic005G169400 Sobic005G169400 Sobic003G111300--Sobic005G169400 Sobic010G210200--Sobic006G132500 Sobic001G132000 Sobic001G132000 Sobic010G210200--Sobic001G132000 Sobic005G215900 Sobic005G215900 Sobic010G210200--Sobic005G215900 Sobic009G167700 Sobic009G167700 Sobic010G210200--Sobic009G167700 Sobic003G061800 Sobic003G061800 Sobic010G210200--Sobic003G061800 Sobic010G210200--Sobic003G442500 Sobic005G217200 Sobic005G217200 Sobic010G210200--Sobic005G217200 Sobic009G210600 Sobic009G210600 Sobic010G210200--Sobic009G210600 Sobic010G210200--Sobic003G061400 Sobic006G132500--Sobic010G210200 Sobic008G182300 Sobic008G182300 Sobic006G132500--Sobic008G182300 Sobic003G244600 Sobic003G244600 Sobic006G132500--Sobic003G244600 Sobic006G132500--Sobic005G169400 Sobic001G145600 Sobic001G145600 Sobic006G132500--Sobic001G145600 Sobic006G132500--Sobic003G111300 Sobic006G132500--Sobic005G215900 Sobic002G023300 Sobic002G023300 Sobic006G132500--Sobic002G023300 Sobic001G145700 Sobic001G145700 Sobic006G132500--Sobic001G145700 Sobic010G176700--Sobic003G061400 Sobic002G249000 Sobic002G249000 Sobic010G176700--Sobic002G249000 Sobic009G003900 Sobic009G003900 Sobic010G176700--Sobic009G003900 Sobic010G176700--Sobic001G184000 Sobic002G057300 Sobic002G057300 Sobic010G176700--Sobic002G057300 Sobic010G176700--Sobic003G442500 Sobic004G185900 Sobic004G185900 Sobic010G176700--Sobic004G185900 Sobic001G010400 Sobic001G010400 Sobic010G176700--Sobic001G010400 Sobic004G277000 Sobic004G277000 Sobic010G176700--Sobic004G277000 Sobic003G442500--Sobic003G061400 Sobic003G442500--Sobic010G210200 Sobic003G442500--Sobic010G176700 Sobic004G333200 Sobic004G333200 Sobic003G442500--Sobic004G333200 Sobic002G113100 Sobic002G113100 Sobic003G442500--Sobic002G113100 Sobic003G442500--Sobic003G061800 Sobic001G409200 Sobic001G409200 Sobic003G442500--Sobic001G409200 Sobic003G442500--Sobic003G111300 Sobic003G442500--Sobic001G010400 Sobic004G006200 Sobic004G006200 Sobic010G264700--Sobic004G006200 Sobic001G334600 Sobic001G334600 Sobic010G264700--Sobic001G334600 Sobic004G295800 Sobic004G295800 Sobic010G264700--Sobic004G295800 Sobic002G132000 Sobic002G132000 Sobic010G264700--Sobic002G132000 Sobic009G057300 Sobic009G057300 Sobic010G264700--Sobic009G057300 Sobic007G062600 Sobic007G062600 Sobic010G264700--Sobic007G062600 Sobic001G137100 Sobic001G137100 Sobic010G264700--Sobic001G137100 Sobic002G244100 Sobic002G244100 Sobic010G264700--Sobic002G244100 Sobic008G191100 Sobic008G191100 Sobic010G264700--Sobic008G191100 Sobic003G061400--Sobic004G333200 Sobic003G061400--Sobic010G176700 Sobic003G061400--Sobic003G442500 Sobic003G061400--Sobic001G132000 Sobic003G061400--Sobic005G215900 Sobic003G061400--Sobic010G210200 Sobic005G024900 Sobic005G024900 Sobic003G061400--Sobic005G024900 Sobic009G016800 Sobic009G016800 Sobic003G061400--Sobic009G016800 Sobic006G127100 Sobic006G127100 Sobic003G061400--Sobic006G127100 Sobic001G401300 Sobic001G401300 Sobic005G037100--Sobic001G401300 Sobic005G131700 Sobic005G131700 Sobic005G037100--Sobic005G131700 Sobic005G037100--Sobic006G132500 Sobic005G136300 Sobic005G136300 Sobic005G037100--Sobic005G136300 Sobic003G280900 Sobic003G280900 Sobic005G037100--Sobic003G280900 Sobic005G037100--Sobic001G010400 Sobic002G000400 Sobic002G000400 Sobic005G037100--Sobic002G000400 Sobic005G037100--Sobic010G210200 Sobic002G333900 Sobic002G333900 Sobic005G037100--Sobic002G333900 Sobic001G184000--Sobic009G003900 Sobic003G075500 Sobic003G075500 Sobic001G184000--Sobic003G075500 Sobic001G184000--Sobic010G176700 Sobic001G184000--Sobic004G277000 Sobic001G184000--Sobic002G249000 Sobic001G184000--Sobic001G010400 Sobic010G224200 Sobic010G224200 Sobic001G184000--Sobic010G224200 Sobic005G117400 Sobic005G117400 Sobic001G184000--Sobic005G117400 Sobic006G264300 Sobic006G264300 Sobic001G184000--Sobic006G264300
Octagon: transcription factors


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