Gene annotation
Transcriptome id Sobic.001G409200.1
Synonym SbLBD8;lateral organ boundaries, lateral organ boundaries, LBD1, SbLBD8, Sb01g038650
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment" (PubMedID : 20499123)
"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
DUF260 domain containing protein, putative, expressed
UniProt C5WNK8
Pfam PF03195
Panther DB PTHR31301 PTHR31301:SF29
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G07900 : LOB domain-containing protein 1
RAP-DB (Rice) LOC_Os03g17810.1 : DUF260 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a001949 , Zm00025a038196 , Zm00025a052692 , Zm00025a040751
Brachypodium KQK07840 , KQK22193
Barley HORVU1Hr1G012720.1 , HORVU1Hr1G012720.2 , HORVU4Hr1G056890.2 , HORVU4Hr1G056890.3
Wheat TraesCS4D02G197400 , TraesCS4B02G197100 , TraesCS1A02G062200 , TraesCS4A02G107300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G333200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
2 Sobic.003G442500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CESA2 - cellulose synthase, expressed -
3 Sobic.010G210200 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
4 Sobic.006G132500 CHIT3 - Chitinase family protein precursor, expressed K01183: chitinase
5 Sobic.003G061400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@basic helix-loop-helix, putative, expressed -
6 Sobic.003G280900 NADP-malic enzyme(PubMedID : 26904072)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
7 Sobic.009G210600 GTPase-activating protein, putative, expressed -
8 Sobic.001G393800 enoyl-CoA hydratase/isomerase family protein, putative, expressed -
9 Sobic.003G333501 - -
10 Sobic.010G176700 receptor-like protein kinase precursor, putative, expressed -
11 Sobic.004G345800 Peroxisomal 3-ketoacyl-CoA thiolase 3 PKT3 (At)(PubMedID : 27208977)@3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1
12 Sobic.006G157700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@glycosyl hydrolase family 3 protein, putative, expressed -
13 Sobic.006G140200 sialyltransferase family domain containing protein, expressed -
14 Sobic.002G024100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lectin-like receptor kinase, putative, expressed -
15 Sobic.002G249000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AT hook motif domain containing protein, expressed -
16 Sobic.001G010400 snRK1-interacting protein 1, putative, expressed -
17 Sobic.002G175500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsSCP44 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
18 Sobic.004G067200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
19 Sobic.002G113300 expressed protein -
20 Sobic.003G061800 glutaryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase


Gene co-expression network
sample Sobic001G409200 Sobic001G409200 Sobic004G333200 Sobic004G333200 Sobic001G409200--Sobic004G333200 Sobic003G442500 Sobic003G442500 Sobic001G409200--Sobic003G442500 Sobic010G210200 Sobic010G210200 Sobic001G409200--Sobic010G210200 Sobic006G132500 Sobic006G132500 Sobic001G409200--Sobic006G132500 Sobic003G061400 Sobic003G061400 Sobic001G409200--Sobic003G061400 Sobic003G280900 Sobic003G280900 Sobic001G409200--Sobic003G280900 Sobic009G210600 Sobic009G210600 Sobic001G409200--Sobic009G210600 Sobic001G393800 Sobic001G393800 Sobic001G409200--Sobic001G393800 Sobic003G333501 Sobic003G333501 Sobic001G409200--Sobic003G333501 Sobic004G333200--Sobic003G061400 Sobic005G178100 Sobic005G178100 Sobic004G333200--Sobic005G178100 Sobic001G305800 Sobic001G305800 Sobic004G333200--Sobic001G305800 Sobic007G219900 Sobic007G219900 Sobic004G333200--Sobic007G219900 Sobic006G127100 Sobic006G127100 Sobic004G333200--Sobic006G127100 Sobic004G345800 Sobic004G345800 Sobic004G333200--Sobic004G345800 Sobic004G321800 Sobic004G321800 Sobic004G333200--Sobic004G321800 Sobic004G101900 Sobic004G101900 Sobic004G333200--Sobic004G101900 Sobic003G184900 Sobic003G184900 Sobic004G333200--Sobic003G184900 Sobic003G442500--Sobic003G061400 Sobic003G442500--Sobic010G210200 Sobic010G176700 Sobic010G176700 Sobic003G442500--Sobic010G176700 Sobic003G442500--Sobic004G333200 Sobic002G113100 Sobic002G113100 Sobic003G442500--Sobic002G113100 Sobic003G061800 Sobic003G061800 Sobic003G442500--Sobic003G061800 Sobic003G442500--Sobic001G409200 Sobic003G111300 Sobic003G111300 Sobic003G442500--Sobic003G111300 Sobic001G010400 Sobic001G010400 Sobic003G442500--Sobic001G010400 Sobic010G210200--Sobic006G132500 Sobic001G132000 Sobic001G132000 Sobic010G210200--Sobic001G132000 Sobic005G215900 Sobic005G215900 Sobic010G210200--Sobic005G215900 Sobic009G167700 Sobic009G167700 Sobic010G210200--Sobic009G167700 Sobic010G210200--Sobic003G061800 Sobic010G210200--Sobic003G442500 Sobic005G217200 Sobic005G217200 Sobic010G210200--Sobic005G217200 Sobic010G210200--Sobic009G210600 Sobic010G210200--Sobic003G061400 Sobic006G132500--Sobic010G210200 Sobic008G182300 Sobic008G182300 Sobic006G132500--Sobic008G182300 Sobic003G244600 Sobic003G244600 Sobic006G132500--Sobic003G244600 Sobic005G169400 Sobic005G169400 Sobic006G132500--Sobic005G169400 Sobic001G145600 Sobic001G145600 Sobic006G132500--Sobic001G145600 Sobic006G132500--Sobic003G111300 Sobic006G132500--Sobic005G215900 Sobic002G023300 Sobic002G023300 Sobic006G132500--Sobic002G023300 Sobic001G145700 Sobic001G145700 Sobic006G132500--Sobic001G145700 Sobic003G061400--Sobic004G333200 Sobic003G061400--Sobic010G176700 Sobic003G061400--Sobic003G442500 Sobic003G061400--Sobic001G132000 Sobic003G061400--Sobic005G215900 Sobic003G061400--Sobic010G210200 Sobic005G024900 Sobic005G024900 Sobic003G061400--Sobic005G024900 Sobic009G016800 Sobic009G016800 Sobic003G061400--Sobic009G016800 Sobic003G061400--Sobic006G127100 Sobic002G249000 Sobic002G249000 Sobic003G280900--Sobic002G249000 Sobic003G333400 Sobic003G333400 Sobic003G280900--Sobic003G333400 Sobic003G280900--Sobic001G010400 Sobic004G276100 Sobic004G276100 Sobic003G280900--Sobic004G276100 Sobic004G050000 Sobic004G050000 Sobic003G280900--Sobic004G050000 Sobic007G195100 Sobic007G195100 Sobic003G280900--Sobic007G195100 Sobic001G026900 Sobic001G026900 Sobic003G280900--Sobic001G026900 Sobic005G117400 Sobic005G117400 Sobic003G280900--Sobic005G117400 Sobic002G090200 Sobic002G090200 Sobic003G280900--Sobic002G090200 Sobic004G255200 Sobic004G255200 Sobic009G210600--Sobic004G255200 Sobic009G210600--Sobic010G210200 Sobic005G086100 Sobic005G086100 Sobic009G210600--Sobic005G086100 Sobic002G087800 Sobic002G087800 Sobic009G210600--Sobic002G087800 Sobic009G210600--Sobic009G167700 Sobic003G354400 Sobic003G354400 Sobic009G210600--Sobic003G354400 Sobic001G334600 Sobic001G334600 Sobic009G210600--Sobic001G334600 Sobic004G225100 Sobic004G225100 Sobic009G210600--Sobic004G225100 Sobic009G210600--Sobic004G345800 Sobic008G107500 Sobic008G107500 Sobic001G393800--Sobic008G107500 Sobic005G150800 Sobic005G150800 Sobic001G393800--Sobic005G150800 Sobic001G393800--Sobic001G010400 Sobic001G393800--Sobic003G333400 Sobic004G167400 Sobic004G167400 Sobic001G393800--Sobic004G167400 Sobic001G057800 Sobic001G057800 Sobic001G393800--Sobic001G057800 Sobic002G175500 Sobic002G175500 Sobic001G393800--Sobic002G175500 Sobic009G099500 Sobic009G099500 Sobic001G393800--Sobic009G099500 Sobic001G023200 Sobic001G023200 Sobic001G393800--Sobic001G023200 Sobic003G333501--Sobic003G333400 Sobic002G329100 Sobic002G329100 Sobic003G333501--Sobic002G329100 Sobic004G067200 Sobic004G067200 Sobic003G333501--Sobic004G067200 Sobic003G333501--Sobic009G210600 Sobic003G333501--Sobic001G393800 Sobic003G333501--Sobic004G276100 Sobic003G333501--Sobic007G195100 Sobic003G333501--Sobic001G409200 Sobic009G038401 Sobic009G038401 Sobic003G333501--Sobic009G038401
Octagon: transcription factors


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