Gene annotation
Transcriptome id Sobic.006G188900.2,Sobic.006G188900.1
Synonym SCL8, Sb06g026240
Functional annotation GRAS family transcription factor domain containing protein, expressed
UniProt A0A1Z5RFQ9 , C5YEH2
Pfam PF03514
Panther DB PTHR31636 PTHR31636:SF29 PTHR31636 PTHR31636:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G52510 : SCARECROW-like 1,SCARECROW-like 8
RAP-DB (Rice) LOC_Os04g49110.1 : GRAS family transcription factor domain containing protein, expressed
MaizeGDB (Corn) Zm00025a056726 , Zm00025a010087
Brachypodium KQJ84182
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.006G188900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G182800 heat stress transcription factor B-1, putative, expressed K09419: heat shock transcription factor, other eukaryote
2 Sobic.003G046800 MYB family transcription factor, putative, expressed -
3 Sobic.001G160200 expressed protein -
4 Sobic.010G076500 - -
5 Sobic.005G061000 ABC-2 type transporter domain containing protein, expressed -
6 Sobic.001G396300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Protein CP12-2 (Os)(PubMedID : 27208977)@calvin cycle protein CP12, putative, expressed -
7 Sobic.009G195800 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
8 Sobic.001G020500 lectin protein kinase family protein, putative, expressed -
9 Sobic.010G233400 Protein dihydroflavonol-4-reductase DFR (Os)(PubMedID : 27208977)@dihydroflavonol-4-reductase, putative, expressed -
10 Sobic.001G041500 basic helix-loop-helix, putative, expressed -
11 Sobic.003G131500 VQ domain containing protein, putative, expressed -
12 Sobic.006G184400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
13 Sobic.004G170032 - -
14 Sobic.007G169600 L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
15 Sobic.008G075600 - -
16 Sobic.002G331450 - -
17 Sobic.004G332100 zinc finger, C3HC4 type domain containing protein, expressed -
18 Sobic.001G118900 DUF292 domain containing protein, expressed -
19 Sobic.007G160200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@mitochondrial carrier protein, putative, expressed K15104: SLC25A11, solute carrier family 25 (mitochondrial oxoglutarate transporter), member 11
20 Sobic.010G016500 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@ Relatively high abundance in cold tolerant sorghum under cold stress(PubMedID : 26645959)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@key regulator in cold signaling pathway (Arabidopsis)(PubMedID : 16244905)@dehydration-responsive element-binding protein, putative, expressed -


Gene co-expression network
sample Sobic006G188900 Sobic006G188900 Sobic006G182800 Sobic006G182800 Sobic006G188900--Sobic006G182800 Sobic003G046800 Sobic003G046800 Sobic006G188900--Sobic003G046800 Sobic001G160200 Sobic001G160200 Sobic006G188900--Sobic001G160200 Sobic010G076500 Sobic010G076500 Sobic006G188900--Sobic010G076500 Sobic005G061000 Sobic005G061000 Sobic006G188900--Sobic005G061000 Sobic001G396300 Sobic001G396300 Sobic006G188900--Sobic001G396300 Sobic009G195800 Sobic009G195800 Sobic006G188900--Sobic009G195800 Sobic001G020500 Sobic001G020500 Sobic006G188900--Sobic001G020500 Sobic010G233400 Sobic010G233400 Sobic006G188900--Sobic010G233400 Sobic006G182800--Sobic001G396300 Sobic004G227400 Sobic004G227400 Sobic006G182800--Sobic004G227400 Sobic003G373150 Sobic003G373150 Sobic006G182800--Sobic003G373150 Sobic004G283300 Sobic004G283300 Sobic006G182800--Sobic004G283300 Sobic004G283201 Sobic004G283201 Sobic006G182800--Sobic004G283201 Sobic006G055600 Sobic006G055600 Sobic006G182800--Sobic006G055600 Sobic006G182800--Sobic010G076500 Sobic006G005600 Sobic006G005600 Sobic006G182800--Sobic006G005600 Sobic004G310600 Sobic004G310600 Sobic006G182800--Sobic004G310600 Sobic002G403100 Sobic002G403100 Sobic003G046800--Sobic002G403100 Sobic003G046800--Sobic006G188900 Sobic003G046800--Sobic001G020500 Sobic003G046800--Sobic001G160200 Sobic008G166700 Sobic008G166700 Sobic003G046800--Sobic008G166700 Sobic004G307700 Sobic004G307700 Sobic003G046800--Sobic004G307700 Sobic008G059400 Sobic008G059400 Sobic003G046800--Sobic008G059400 Sobic002G192101 Sobic002G192101 Sobic003G046800--Sobic002G192101 Sobic001G041500 Sobic001G041500 Sobic003G046800--Sobic001G041500 Sobic007G153001 Sobic007G153001 Sobic001G160200--Sobic007G153001 Sobic001G075101 Sobic001G075101 Sobic001G160200--Sobic001G075101 Sobic007G169600 Sobic007G169600 Sobic001G160200--Sobic007G169600 Sobic001G106000 Sobic001G106000 Sobic001G160200--Sobic001G106000 Sobic003G040800 Sobic003G040800 Sobic001G160200--Sobic003G040800 Sobic001G509400 Sobic001G509400 Sobic001G160200--Sobic001G509400 Sobic002G023900 Sobic002G023900 Sobic001G160200--Sobic002G023900 Sobic002G342100 Sobic002G342100 Sobic001G160200--Sobic002G342100 Sobic003G083000 Sobic003G083000 Sobic001G160200--Sobic003G083000 Sobic001G095750 Sobic001G095750 Sobic010G076500--Sobic001G095750 Sobic010G076500--Sobic004G227400 Sobic002G189000 Sobic002G189000 Sobic010G076500--Sobic002G189000 Sobic010G085400 Sobic010G085400 Sobic010G076500--Sobic010G085400 Sobic002G013900 Sobic002G013900 Sobic010G076500--Sobic002G013900 Sobic002G182800 Sobic002G182800 Sobic010G076500--Sobic002G182800 Sobic003G233900 Sobic003G233900 Sobic010G076500--Sobic003G233900 Sobic003G131500 Sobic003G131500 Sobic010G076500--Sobic003G131500 Sobic005G087800 Sobic005G087800 Sobic010G076500--Sobic005G087800 Sobic005G061033 Sobic005G061033 Sobic005G061000--Sobic005G061033 Sobic002G037400 Sobic002G037400 Sobic005G061000--Sobic002G037400 Sobic007G143100 Sobic007G143100 Sobic005G061000--Sobic007G143100 Sobic001G155300 Sobic001G155300 Sobic005G061000--Sobic001G155300 Sobic005G016900 Sobic005G016900 Sobic005G061000--Sobic005G016900 Sobic003G397400 Sobic003G397400 Sobic005G061000--Sobic003G397400 Sobic005G061000--Sobic007G169600 Sobic007G143200 Sobic007G143200 Sobic005G061000--Sobic007G143200 Sobic002G325600 Sobic002G325600 Sobic005G061000--Sobic002G325600 Sobic004G320300 Sobic004G320300 Sobic001G396300--Sobic004G320300 Sobic001G186925 Sobic001G186925 Sobic001G396300--Sobic001G186925 Sobic006G065700 Sobic006G065700 Sobic001G396300--Sobic006G065700 Sobic001G441800 Sobic001G441800 Sobic001G396300--Sobic001G441800 Sobic002G387100 Sobic002G387100 Sobic001G396300--Sobic002G387100 Sobic002G430200 Sobic002G430200 Sobic001G396300--Sobic002G430200 Sobic001G004000 Sobic001G004000 Sobic001G396300--Sobic001G004000 Sobic001G525000 Sobic001G525000 Sobic001G396300--Sobic001G525000 Sobic009G198400 Sobic009G198400 Sobic001G396300--Sobic009G198400 Sobic003G066900 Sobic003G066900 Sobic009G195800--Sobic003G066900 Sobic009G195800--Sobic003G233900 Sobic009G195800--Sobic004G283201 Sobic009G195800--Sobic003G373150 Sobic006G267900 Sobic006G267900 Sobic009G195800--Sobic006G267900 Sobic004G285100 Sobic004G285100 Sobic009G195800--Sobic004G285100 Sobic010G260300 Sobic010G260300 Sobic009G195800--Sobic010G260300 Sobic009G195800--Sobic002G189000 Sobic009G195800--Sobic004G283300 Sobic001G020500--Sobic004G307700 Sobic006G195200 Sobic006G195200 Sobic001G020500--Sobic006G195200 Sobic001G296300 Sobic001G296300 Sobic001G020500--Sobic001G296300 Sobic003G118900 Sobic003G118900 Sobic001G020500--Sobic003G118900 Sobic004G334100 Sobic004G334100 Sobic001G020500--Sobic004G334100 Sobic005G052000 Sobic005G052000 Sobic001G020500--Sobic005G052000 Sobic005G098200 Sobic005G098200 Sobic001G020500--Sobic005G098200 Sobic006G087200 Sobic006G087200 Sobic001G020500--Sobic006G087200 Sobic010G108500 Sobic010G108500 Sobic001G020500--Sobic010G108500 Sobic001G157400 Sobic001G157400 Sobic010G233400--Sobic001G157400 Sobic001G050800 Sobic001G050800 Sobic010G233400--Sobic001G050800 Sobic001G075800 Sobic001G075800 Sobic010G233400--Sobic001G075800 Sobic010G233400--Sobic003G131500 Sobic002G197600 Sobic002G197600 Sobic010G233400--Sobic002G197600 Sobic009G037800 Sobic009G037800 Sobic010G233400--Sobic009G037800 Sobic004G244100 Sobic004G244100 Sobic010G233400--Sobic004G244100 Sobic009G170100 Sobic009G170100 Sobic010G233400--Sobic009G170100 Sobic003G087100 Sobic003G087100 Sobic010G233400--Sobic003G087100
Octagon: transcription factors


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