Gene annotation
Transcriptome id Sobic.006G238400.1
Synonym
Functional annotation membrane associated DUF588 domain containing protein, putative, expressed
UniProt A0A1B6PNK6
Pfam PF04535
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G53850 : Uncharacterised protein family (UPF0497)
RAP-DB (Rice) LOC_Os05g38250.1 : membrane associated DUF588 domain containing protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.006G238400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G038100 OsFBDUF30 - F-box and DUF domain containing protein, expressed -
2 Sobic.002G082100 serine/threonine-protein kinase, putative, expressed -
3 Sobic.004G107200 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
4 Sobic.005G200900 SCC3, putative, expressed K06671: STAG1_2, SCC3, cohesin complex subunit SA-1/2
5 Sobic.007G159200 PWWP domain containing protein, expressed -
6 Sobic.009G185700 mutS domain V family protein, expressed K08741: DNA mismatch repair protein MSH5
7 Sobic.002G052700 cyclophilin, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
8 Sobic.003G341700 exo70 exocyst complex subunit domain containing protein, expressed -
9 Sobic.010G262100 expressed protein -
10 Sobic.008G047700 serine esterase family protein, putative, expressed -
11 Sobic.008G080500 expressed protein -
12 Sobic.003G445500 "domain confirmed by Pfam database, expressed in leaf, flower, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@ABC transporter, ATP-binding protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
13 Sobic.004G355800 expressed protein -
14 Sobic.002G425500 ATPOT1, putative, expressed -
15 Sobic.002G043100 histone deacetylase, putative, expressed K11407: histone deacetylase 6
16 Sobic.003G016900 splicing factor 3B subunit 1, putative, expressed K12828: SF3B1, splicing factor 3B subunit 1
17 Sobic.001G451300 NUP155, putative, expressed K14312: NUP155, NUP170, nuclear pore complex protein Nup155
18 Sobic.005G191900 transporter family protein, putative, expressed -
19 Sobic.001G529600 1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
20 Sobic.009G124900 - -


Gene co-expression network
sample Sobic006G238400 Sobic006G238400 Sobic010G038100 Sobic010G038100 Sobic006G238400--Sobic010G038100 Sobic002G082100 Sobic002G082100 Sobic006G238400--Sobic002G082100 Sobic004G107200 Sobic004G107200 Sobic006G238400--Sobic004G107200 Sobic005G200900 Sobic005G200900 Sobic006G238400--Sobic005G200900 Sobic007G159200 Sobic007G159200 Sobic006G238400--Sobic007G159200 Sobic009G185700 Sobic009G185700 Sobic006G238400--Sobic009G185700 Sobic002G052700 Sobic002G052700 Sobic006G238400--Sobic002G052700 Sobic003G341700 Sobic003G341700 Sobic006G238400--Sobic003G341700 Sobic010G262100 Sobic010G262100 Sobic006G238400--Sobic010G262100 Sobic010G038100--Sobic005G200900 Sobic010G026600 Sobic010G026600 Sobic010G038100--Sobic010G026600 Sobic001G440100 Sobic001G440100 Sobic010G038100--Sobic001G440100 Sobic004G235300 Sobic004G235300 Sobic010G038100--Sobic004G235300 Sobic006G080400 Sobic006G080400 Sobic010G038100--Sobic006G080400 Sobic008G002500 Sobic008G002500 Sobic010G038100--Sobic008G002500 Sobic001G501800 Sobic001G501800 Sobic010G038100--Sobic001G501800 Sobic003G101700 Sobic003G101700 Sobic010G038100--Sobic003G101700 Sobic010G038100--Sobic009G185700 Sobic002G377800 Sobic002G377800 Sobic002G082100--Sobic002G377800 Sobic009G105200 Sobic009G105200 Sobic002G082100--Sobic009G105200 Sobic004G129600 Sobic004G129600 Sobic002G082100--Sobic004G129600 Sobic002G082100--Sobic006G238400 Sobic010G138900 Sobic010G138900 Sobic002G082100--Sobic010G138900 Sobic002G082100--Sobic007G159200 Sobic002G082100--Sobic002G052700 Sobic001G451300 Sobic001G451300 Sobic002G082100--Sobic001G451300 Sobic010G085200 Sobic010G085200 Sobic002G082100--Sobic010G085200 Sobic002G431400 Sobic002G431400 Sobic004G107200--Sobic002G431400 Sobic002G425500 Sobic002G425500 Sobic004G107200--Sobic002G425500 Sobic006G119400 Sobic006G119400 Sobic004G107200--Sobic006G119400 Sobic003G101500 Sobic003G101500 Sobic004G107200--Sobic003G101500 Sobic002G043100 Sobic002G043100 Sobic004G107200--Sobic002G043100 Sobic004G107200--Sobic001G501800 Sobic001G456900 Sobic001G456900 Sobic004G107200--Sobic001G456900 Sobic001G261900 Sobic001G261900 Sobic004G107200--Sobic001G261900 Sobic006G269800 Sobic006G269800 Sobic004G107200--Sobic006G269800 Sobic004G355800 Sobic004G355800 Sobic005G200900--Sobic004G355800 Sobic002G154000 Sobic002G154000 Sobic005G200900--Sobic002G154000 Sobic003G360400 Sobic003G360400 Sobic005G200900--Sobic003G360400 Sobic009G251500 Sobic009G251500 Sobic005G200900--Sobic009G251500 Sobic009G088000 Sobic009G088000 Sobic005G200900--Sobic009G088000 Sobic006G118700 Sobic006G118700 Sobic005G200900--Sobic006G118700 Sobic006G210000 Sobic006G210000 Sobic005G200900--Sobic006G210000 Sobic004G156500 Sobic004G156500 Sobic005G200900--Sobic004G156500 Sobic005G200900--Sobic008G002500 Sobic008G080500 Sobic008G080500 Sobic007G159200--Sobic008G080500 Sobic001G248100 Sobic001G248100 Sobic007G159200--Sobic001G248100 Sobic006G280100 Sobic006G280100 Sobic007G159200--Sobic006G280100 Sobic010G051400 Sobic010G051400 Sobic007G159200--Sobic010G051400 Sobic007G159200--Sobic004G355800 Sobic002G425200 Sobic002G425200 Sobic007G159200--Sobic002G425200 Sobic007G159200--Sobic010G262100 Sobic001G300000 Sobic001G300000 Sobic007G159200--Sobic001G300000 Sobic009G007700 Sobic009G007700 Sobic007G159200--Sobic009G007700 Sobic001G455600 Sobic001G455600 Sobic009G185700--Sobic001G455600 Sobic002G344000 Sobic002G344000 Sobic009G185700--Sobic002G344000 Sobic004G134200 Sobic004G134200 Sobic009G185700--Sobic004G134200 Sobic009G185700--Sobic002G425500 Sobic003G441900 Sobic003G441900 Sobic009G185700--Sobic003G441900 Sobic005G142800 Sobic005G142800 Sobic009G185700--Sobic005G142800 Sobic002G211800 Sobic002G211800 Sobic009G185700--Sobic002G211800 Sobic003G077700 Sobic003G077700 Sobic009G185700--Sobic003G077700 Sobic009G215500 Sobic009G215500 Sobic009G185700--Sobic009G215500 Sobic001G251100 Sobic001G251100 Sobic002G052700--Sobic001G251100 Sobic004G357400 Sobic004G357400 Sobic002G052700--Sobic004G357400 Sobic003G042400 Sobic003G042400 Sobic002G052700--Sobic003G042400 Sobic004G321700 Sobic004G321700 Sobic002G052700--Sobic004G321700 Sobic001G393900 Sobic001G393900 Sobic002G052700--Sobic001G393900 Sobic001G003500 Sobic001G003500 Sobic002G052700--Sobic001G003500 Sobic001G052400 Sobic001G052400 Sobic002G052700--Sobic001G052400 Sobic003G379200 Sobic003G379200 Sobic002G052700--Sobic003G379200 Sobic008G147200 Sobic008G147200 Sobic002G052700--Sobic008G147200 Sobic006G112700 Sobic006G112700 Sobic003G341700--Sobic006G112700 Sobic006G067700 Sobic006G067700 Sobic003G341700--Sobic006G067700 Sobic002G162500 Sobic002G162500 Sobic003G341700--Sobic002G162500 Sobic003G341700--Sobic008G080500 Sobic001G258900 Sobic001G258900 Sobic003G341700--Sobic001G258900 Sobic003G341700--Sobic005G200900 Sobic003G341700--Sobic010G038100 Sobic003G127500 Sobic003G127500 Sobic003G341700--Sobic003G127500 Sobic003G341700--Sobic004G355800 Sobic010G262100--Sobic001G451300 Sobic010G262100--Sobic010G138900 Sobic010G262100--Sobic001G248100 Sobic010G262100--Sobic008G080500 Sobic010G262100--Sobic002G043100 Sobic002G399800 Sobic002G399800 Sobic010G262100--Sobic002G399800 Sobic002G371600 Sobic002G371600 Sobic010G262100--Sobic002G371600 Sobic003G314700 Sobic003G314700 Sobic010G262100--Sobic003G314700 Sobic008G092800 Sobic008G092800 Sobic010G262100--Sobic008G092800
Octagon: transcription factors


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