Gene annotation
Transcriptome id Sobic.006G256100.2,Sobic.006G256100.1
Synonym Sb06g031960
Functional annotation SWIB/MDM2 domain containing protein, expressed
UniProt C5Y9Z5
Pfam PF08766 PF02201
Panther DB PTHR13844 PTHR13844:SF19
NCBI CDD -
KEGG Orthology K15223; UAF30, upstream activation factor subunit UAF30
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G22360 : SWIB complex BAF60b domain-containing protein
RAP-DB (Rice) LOC_Os04g56980.1 : SWIB/MDM2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a057308 , Zm00025a009404
Brachypodium KQJ85165 , PNT62088
Barley HORVU2Hr1G109100.1 , HORVU2Hr1G109030.4 , HORVU2Hr1G109030.1 , HORVU2Hr1G109030.3 , HORVU2Hr1G109030.2
Wheat TraesCS2A02G488300 , TraesCS2B02G515900 , TraesCS2B02G515900 , TraesCS2B02G515900 , TraesCS2D02G488600
Populus -


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cDNA sequences
Sobic.006G256100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G504000 Citrate transporter protein, putative, expressed -
2 Sobic.001G306000 protein kinase, putative, expressed -
3 Sobic.009G137800 expressed protein -
4 Sobic.001G451000 two-component response regulator, putative, expressed K14491: two-component response regulator ARR-B family
5 Sobic.009G161600 - -
6 Sobic.001G446900 arginyl-tRNA synthetase, putative, expressed -
7 Sobic.007G158100 expressed protein -
8 Sobic.003G333600 OsFBX29 - F-box domain containing protein, expressed -
9 Sobic.001G284800 histone H3, putative, expressed K11253: histone H3
10 Sobic.001G372700 B-box (BBX) protein(PubMedID : 30626335)@CCT/B-box zinc finger protein, putative, expressed -
11 Sobic.007G145200 serine esterase family protein, putative, expressed -
12 Sobic.008G189400 NBS-LRR disease resistance protein, putative, expressed -
13 Sobic.009G127900 - -
14 Sobic.008G093500 RNA recognition motif containing protein, putative, expressed K03248: translation initiation factor 3 subunit G
15 Sobic.003G044200 C2 domain containing protein, putative, expressed -
16 Sobic.001G427300 glycosyl transferase, group 1 domain containing protein, expressed K06119: sulfoquinovosyltransferase
17 Sobic.003G012500 expressed protein -
18 Sobic.010G280100 expressed protein -
19 Sobic.004G188400 photoperiodic flowering time gene(PubMedID : 22394582)@FAD binding domain of DNA photolyase domain containing protein, expressed K12118: cryptochrome 1
20 Sobic.002G166700 cyclin, putative, expressed -


Gene co-expression network
sample Sobic006G256100 Sobic006G256100 Sobic001G504000 Sobic001G504000 Sobic006G256100--Sobic001G504000 Sobic001G306000 Sobic001G306000 Sobic006G256100--Sobic001G306000 Sobic009G137800 Sobic009G137800 Sobic006G256100--Sobic009G137800 Sobic001G451000 Sobic001G451000 Sobic006G256100--Sobic001G451000 Sobic009G161600 Sobic009G161600 Sobic006G256100--Sobic009G161600 Sobic001G446900 Sobic001G446900 Sobic006G256100--Sobic001G446900 Sobic007G158100 Sobic007G158100 Sobic006G256100--Sobic007G158100 Sobic003G333600 Sobic003G333600 Sobic006G256100--Sobic003G333600 Sobic001G284800 Sobic001G284800 Sobic006G256100--Sobic001G284800 Sobic001G504000--Sobic009G161600 Sobic009G127900 Sobic009G127900 Sobic001G504000--Sobic009G127900 Sobic009G140500 Sobic009G140500 Sobic001G504000--Sobic009G140500 Sobic004G290800 Sobic004G290800 Sobic001G504000--Sobic004G290800 Sobic001G420200 Sobic001G420200 Sobic001G504000--Sobic001G420200 Sobic007G037900 Sobic007G037900 Sobic001G504000--Sobic007G037900 Sobic001G274200 Sobic001G274200 Sobic001G504000--Sobic001G274200 Sobic004G205800 Sobic004G205800 Sobic001G504000--Sobic004G205800 Sobic006G082600 Sobic006G082600 Sobic001G504000--Sobic006G082600 Sobic009G183200 Sobic009G183200 Sobic001G306000--Sobic009G183200 Sobic001G306000--Sobic001G446900 Sobic001G497300 Sobic001G497300 Sobic001G306000--Sobic001G497300 Sobic007G078000 Sobic007G078000 Sobic001G306000--Sobic007G078000 Sobic007G205800 Sobic007G205800 Sobic001G306000--Sobic007G205800 Sobic001G306000--Sobic001G420200 Sobic001G486300 Sobic001G486300 Sobic001G306000--Sobic001G486300 Sobic001G306000--Sobic003G333600 Sobic007G104800 Sobic007G104800 Sobic001G306000--Sobic007G104800 Sobic004G153600 Sobic004G153600 Sobic009G137800--Sobic004G153600 Sobic008G189400 Sobic008G189400 Sobic009G137800--Sobic008G189400 Sobic004G267300 Sobic004G267300 Sobic009G137800--Sobic004G267300 Sobic003G185200 Sobic003G185200 Sobic009G137800--Sobic003G185200 Sobic008G025900 Sobic008G025900 Sobic009G137800--Sobic008G025900 Sobic001G424700 Sobic001G424700 Sobic009G137800--Sobic001G424700 Sobic009G087800 Sobic009G087800 Sobic009G137800--Sobic009G087800 Sobic001G022100 Sobic001G022100 Sobic009G137800--Sobic001G022100 Sobic010G260500 Sobic010G260500 Sobic009G137800--Sobic010G260500 Sobic005G167300 Sobic005G167300 Sobic001G451000--Sobic005G167300 Sobic002G115801 Sobic002G115801 Sobic001G451000--Sobic002G115801 Sobic001G451000--Sobic010G260500 Sobic002G284200 Sobic002G284200 Sobic001G451000--Sobic002G284200 Sobic001G451000--Sobic003G333600 Sobic001G451000--Sobic007G078000 Sobic001G439500 Sobic001G439500 Sobic001G451000--Sobic001G439500 Sobic004G198000 Sobic004G198000 Sobic001G451000--Sobic004G198000 Sobic004G196700 Sobic004G196700 Sobic001G451000--Sobic004G196700 Sobic001G133466 Sobic001G133466 Sobic009G161600--Sobic001G133466 Sobic001G111900 Sobic001G111900 Sobic009G161600--Sobic001G111900 Sobic009G161600--Sobic001G420200 Sobic009G161600--Sobic001G504000 Sobic007G178700 Sobic007G178700 Sobic009G161600--Sobic007G178700 Sobic005G159000 Sobic005G159000 Sobic009G161600--Sobic005G159000 Sobic009G161600--Sobic001G274200 Sobic009G161600--Sobic009G127900 Sobic001G287201 Sobic001G287201 Sobic009G161600--Sobic001G287201 Sobic001G446900--Sobic007G178700 Sobic001G446900--Sobic009G127900 Sobic001G446900--Sobic006G082600 Sobic001G446900--Sobic004G290800 Sobic003G268300 Sobic003G268300 Sobic001G446900--Sobic003G268300 Sobic007G137900 Sobic007G137900 Sobic001G446900--Sobic007G137900 Sobic010G026400 Sobic010G026400 Sobic001G446900--Sobic010G026400 Sobic009G104201 Sobic009G104201 Sobic001G446900--Sobic009G104201 Sobic001G446900--Sobic001G111900 Sobic009G014400 Sobic009G014400 Sobic007G158100--Sobic009G014400 Sobic007G130100 Sobic007G130100 Sobic007G158100--Sobic007G130100 Sobic007G158100--Sobic001G504000 Sobic001G368400 Sobic001G368400 Sobic007G158100--Sobic001G368400 Sobic008G175800 Sobic008G175800 Sobic007G158100--Sobic008G175800 Sobic007G158100--Sobic009G140500 Sobic007G158100--Sobic009G087800 Sobic007G158100--Sobic004G290800 Sobic003G107800 Sobic003G107800 Sobic007G158100--Sobic003G107800 Sobic003G333600--Sobic007G078000 Sobic003G333600--Sobic001G424700 Sobic003G333600--Sobic001G451000 Sobic003G333600--Sobic010G260500 Sobic003G333600--Sobic004G196700 Sobic001G372700 Sobic001G372700 Sobic003G333600--Sobic001G372700 Sobic007G185900 Sobic007G185900 Sobic003G333600--Sobic007G185900 Sobic003G333600--Sobic004G153600 Sobic005G149500 Sobic005G149500 Sobic003G333600--Sobic005G149500 Sobic001G284800--Sobic009G161600 Sobic002G187801 Sobic002G187801 Sobic001G284800--Sobic002G187801 Sobic001G284800--Sobic001G133466 Sobic003G088700 Sobic003G088700 Sobic001G284800--Sobic003G088700 Sobic004G135300 Sobic004G135300 Sobic001G284800--Sobic004G135300 Sobic009G233300 Sobic009G233300 Sobic001G284800--Sobic009G233300 Sobic001G284800--Sobic001G111900 Sobic001G284800--Sobic001G504000 Sobic006G273200 Sobic006G273200 Sobic001G284800--Sobic006G273200
Octagon: transcription factors


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