Gene annotation
Transcriptome id Sobic.006G265700.2
Synonym Sb06g032810
Functional annotation PPR repeat containing protein, expressed
UniProt A0A1Z5RGS4
Pfam PF01535 PF13041 PF12854
Panther DB PTHR24015 PTHR24015:SF557
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G09900 : Pentatricopeptide repeat (PPR-like) superfamily protein
RAP-DB (Rice) LOC_Os04g57900.1 : PPR repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a009312
Brachypodium KQJ85270 , PNT71307 , PNT71308
Barley HORVU7Hr1G098640.2 , HORVU7Hr1G098640.3 , HORVU7Hr1G098640.6 , HORVU7Hr1G098640.7 , HORVU7Hr1G098640.4 , HORVU7Hr1G098640.5 , HORVU7Hr1G098640.8 , HORVU7Hr1G098640.9 , HORVU2Hr1G119900.4 , HORVU2Hr1G119900.5 , HORVU2Hr1G119900.6 , HORVU2Hr1G119900.1 , HORVU2Hr1G119900.2 , HORVU2Hr1G119900.3 , HORVU7Hr1G098640.10 , HORVU7Hr1G098640.11 , HORVU7Hr1G098640.12 , HORVU7Hr1G098640.13 , HORVU7Hr1G098640.14 , HORVU7Hr1G098640.15
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G387800 - K12456: anaphase-promoting complex subunit 13
2 Sobic.002G268700 hydroxymethylglutaryl-CoA synthase, putative, expressed K01641: hydroxymethylglutaryl-CoA synthase
3 Sobic.008G084100 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
4 Sobic.002G232400 clathrin adaptor complex small chain domain containing protein, expressed -
5 Sobic.009G150900 FabA-like domain containing protein, expressed K02372: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase
6 Sobic.001G192700 major facilitator superfamily domain-containing protein 5, putative, expressed -
7 Sobic.001G075600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CSLC10 - cellulose synthase-like family C, expressed -
8 Sobic.006G119300 ribonuclease H2 subunit B, putative, expressed K10744: ribonuclease H2 subunit B
9 Sobic.004G069400 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
10 Sobic.003G439700 ATXR, putative, expressed -
11 Sobic.010G277000 exosome complex exonuclease, putative, expressed K12589: RRP42, exosome complex component RRP42
12 Sobic.001G521100 POLD2 - Putative DNA polymerase delta complex subunit, expressed K02328: DNA polymerase delta subunit 2
13 Sobic.007G112100 enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed K00208: enoyl-[acyl-carrier protein] reductase I
14 Sobic.001G026600 - -
15 Sobic.001G268300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@queuine tRNA-ribosyltransferase, putative, expressed K15407: queuine tRNA-ribosyltransferase subunit QTRTD1
16 Sobic.001G140700 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
17 Sobic.004G117400 expressed protein -
18 Sobic.003G075200 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
19 Sobic.002G304400 expressed protein -
20 Sobic.004G208100 expressed protein -


Gene co-expression network
sample Sobic006G265700 Sobic006G265700 Sobic002G387800 Sobic002G387800 Sobic006G265700--Sobic002G387800 Sobic002G268700 Sobic002G268700 Sobic006G265700--Sobic002G268700 Sobic008G084100 Sobic008G084100 Sobic006G265700--Sobic008G084100 Sobic002G232400 Sobic002G232400 Sobic006G265700--Sobic002G232400 Sobic009G150900 Sobic009G150900 Sobic006G265700--Sobic009G150900 Sobic001G192700 Sobic001G192700 Sobic006G265700--Sobic001G192700 Sobic001G075600 Sobic001G075600 Sobic006G265700--Sobic001G075600 Sobic006G119300 Sobic006G119300 Sobic006G265700--Sobic006G119300 Sobic004G069400 Sobic004G069400 Sobic006G265700--Sobic004G069400 Sobic009G211900 Sobic009G211900 Sobic002G387800--Sobic009G211900 Sobic009G206600 Sobic009G206600 Sobic002G387800--Sobic009G206600 Sobic003G074900 Sobic003G074900 Sobic002G387800--Sobic003G074900 Sobic006G203900 Sobic006G203900 Sobic002G387800--Sobic006G203900 Sobic002G217500 Sobic002G217500 Sobic002G387800--Sobic002G217500 Sobic003G016300 Sobic003G016300 Sobic002G387800--Sobic003G016300 Sobic002G387800--Sobic001G192700 Sobic002G387800--Sobic008G084100 Sobic006G124300 Sobic006G124300 Sobic002G387800--Sobic006G124300 Sobic002G268700--Sobic002G232400 Sobic001G348000 Sobic001G348000 Sobic002G268700--Sobic001G348000 Sobic004G231200 Sobic004G231200 Sobic002G268700--Sobic004G231200 Sobic002G268700--Sobic004G069400 Sobic007G048700 Sobic007G048700 Sobic002G268700--Sobic007G048700 Sobic010G080900 Sobic010G080900 Sobic002G268700--Sobic010G080900 Sobic002G070300 Sobic002G070300 Sobic002G268700--Sobic002G070300 Sobic004G064600 Sobic004G064600 Sobic002G268700--Sobic004G064600 Sobic002G426100 Sobic002G426100 Sobic002G268700--Sobic002G426100 Sobic010G277000 Sobic010G277000 Sobic008G084100--Sobic010G277000 Sobic001G035400 Sobic001G035400 Sobic008G084100--Sobic001G035400 Sobic003G238500 Sobic003G238500 Sobic008G084100--Sobic003G238500 Sobic001G073600 Sobic001G073600 Sobic008G084100--Sobic001G073600 Sobic008G084100--Sobic007G048700 Sobic001G370700 Sobic001G370700 Sobic008G084100--Sobic001G370700 Sobic001G413100 Sobic001G413100 Sobic008G084100--Sobic001G413100 Sobic008G084100--Sobic002G232400 Sobic008G084100--Sobic006G203900 Sobic002G153000 Sobic002G153000 Sobic002G232400--Sobic002G153000 Sobic002G090500 Sobic002G090500 Sobic002G232400--Sobic002G090500 Sobic001G352800 Sobic001G352800 Sobic002G232400--Sobic001G352800 Sobic002G232400--Sobic001G192700 Sobic002G232400--Sobic002G268700 Sobic010G002800 Sobic010G002800 Sobic002G232400--Sobic010G002800 Sobic004G218600 Sobic004G218600 Sobic002G232400--Sobic004G218600 Sobic002G232400--Sobic008G084100 Sobic010G018500 Sobic010G018500 Sobic002G232400--Sobic010G018500 Sobic001G530800 Sobic001G530800 Sobic009G150900--Sobic001G530800 Sobic002G000300 Sobic002G000300 Sobic009G150900--Sobic002G000300 Sobic001G382200 Sobic001G382200 Sobic009G150900--Sobic001G382200 Sobic004G208100 Sobic004G208100 Sobic009G150900--Sobic004G208100 Sobic003G109200 Sobic003G109200 Sobic009G150900--Sobic003G109200 Sobic009G258500 Sobic009G258500 Sobic009G150900--Sobic009G258500 Sobic003G118400 Sobic003G118400 Sobic009G150900--Sobic003G118400 Sobic006G189200 Sobic006G189200 Sobic009G150900--Sobic006G189200 Sobic009G150900--Sobic006G265700 Sobic001G219800 Sobic001G219800 Sobic001G192700--Sobic001G219800 Sobic001G192700--Sobic003G016300 Sobic001G192700--Sobic001G352800 Sobic001G192700--Sobic002G232400 Sobic001G135200 Sobic001G135200 Sobic001G192700--Sobic001G135200 Sobic001G192700--Sobic001G348000 Sobic004G117400 Sobic004G117400 Sobic001G192700--Sobic004G117400 Sobic001G091701 Sobic001G091701 Sobic001G192700--Sobic001G091701 Sobic001G192700--Sobic002G387800 Sobic001G399300 Sobic001G399300 Sobic001G075600--Sobic001G399300 Sobic001G075600--Sobic002G387800 Sobic010G201388 Sobic010G201388 Sobic001G075600--Sobic010G201388 Sobic001G042500 Sobic001G042500 Sobic001G075600--Sobic001G042500 Sobic006G095300 Sobic006G095300 Sobic001G075600--Sobic006G095300 Sobic001G075600--Sobic001G192700 Sobic001G429500 Sobic001G429500 Sobic001G075600--Sobic001G429500 Sobic007G196800 Sobic007G196800 Sobic001G075600--Sobic007G196800 Sobic001G075600--Sobic008G084100 Sobic002G113400 Sobic002G113400 Sobic006G119300--Sobic002G113400 Sobic001G486600 Sobic001G486600 Sobic006G119300--Sobic001G486600 Sobic002G297500 Sobic002G297500 Sobic006G119300--Sobic002G297500 Sobic007G125300 Sobic007G125300 Sobic006G119300--Sobic007G125300 Sobic010G252200 Sobic010G252200 Sobic006G119300--Sobic010G252200 Sobic001G521100 Sobic001G521100 Sobic006G119300--Sobic001G521100 Sobic004G032900 Sobic004G032900 Sobic006G119300--Sobic004G032900 Sobic005G210500 Sobic005G210500 Sobic006G119300--Sobic005G210500 Sobic004G053900 Sobic004G053900 Sobic006G119300--Sobic004G053900 Sobic001G286100 Sobic001G286100 Sobic004G069400--Sobic001G286100 Sobic001G140700 Sobic001G140700 Sobic004G069400--Sobic001G140700 Sobic004G069400--Sobic002G268700 Sobic004G069400--Sobic001G413100 Sobic004G069400--Sobic002G232400 Sobic002G304400 Sobic002G304400 Sobic004G069400--Sobic002G304400 Sobic009G220000 Sobic009G220000 Sobic004G069400--Sobic009G220000 Sobic004G069400--Sobic006G119300 Sobic009G244900 Sobic009G244900 Sobic004G069400--Sobic009G244900
Octagon: transcription factors


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