Gene annotation
Transcriptome id Sobic.007G106800.1
Synonym MED19A, Sb07g015000
Functional annotation nucleolar protein NOP5, putative, expressed
UniProt A0A1B6PH07
Pfam -
Panther DB PTHR22536 PTHR22536:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G12230 : -
RAP-DB (Rice) LOC_Os03g44010.2 : nucleolar protein NOP5, putative, expressed
MaizeGDB (Corn) Zm00025a006176
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.007G106800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G191700 ELF3 protein, putative, expressed K12125: protein EARLY FLOWERING 3
2 Sobic.006G133900 NIN, putative, expressed -
3 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
4 Sobic.001G375100 AAA-type ATPase family protein, putative, expressed -
5 Sobic.001G454500 potyvirus VPg interacting protein, putative, expressed -
6 Sobic.004G174200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
7 Sobic.006G065600 expressed protein -
8 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
9 Sobic.003G198800 myosin, putative, expressed K10357: myosin V
10 Sobic.002G411600 CW-type Zinc Finger, putative, expressed -
11 Sobic.003G247500 expressed protein -
12 Sobic.007G198300 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
13 Sobic.006G050700 disease resistance RPP13-like protein 1, putative, expressed -
14 Sobic.001G365900 PWWP domain containing protein, expressed -
15 Sobic.004G042200 OsFBO8 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
16 Sobic.004G070500 expressed protein -
17 Sobic.009G161550 - -
18 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
19 Sobic.004G143475 - -
20 Sobic.008G130100 protein kinase family protein, putative, expressed -


Gene co-expression network
sample Sobic007G106800 Sobic007G106800 Sobic003G191700 Sobic003G191700 Sobic007G106800--Sobic003G191700 Sobic006G133900 Sobic006G133900 Sobic007G106800--Sobic006G133900 Sobic003G155100 Sobic003G155100 Sobic007G106800--Sobic003G155100 Sobic001G375100 Sobic001G375100 Sobic007G106800--Sobic001G375100 Sobic001G454500 Sobic001G454500 Sobic007G106800--Sobic001G454500 Sobic004G174200 Sobic004G174200 Sobic007G106800--Sobic004G174200 Sobic006G065600 Sobic006G065600 Sobic007G106800--Sobic006G065600 Sobic008G001200 Sobic008G001200 Sobic007G106800--Sobic008G001200 Sobic003G198800 Sobic003G198800 Sobic007G106800--Sobic003G198800 Sobic004G042200 Sobic004G042200 Sobic003G191700--Sobic004G042200 Sobic003G313300 Sobic003G313300 Sobic003G191700--Sobic003G313300 Sobic003G191700--Sobic006G133900 Sobic003G229300 Sobic003G229300 Sobic003G191700--Sobic003G229300 Sobic003G017100 Sobic003G017100 Sobic003G191700--Sobic003G017100 Sobic009G038900 Sobic009G038900 Sobic003G191700--Sobic009G038900 Sobic007G198300 Sobic007G198300 Sobic003G191700--Sobic007G198300 Sobic003G191700--Sobic003G155100 Sobic010G002700 Sobic010G002700 Sobic003G191700--Sobic010G002700 Sobic004G181600 Sobic004G181600 Sobic006G133900--Sobic004G181600 Sobic006G133900--Sobic001G454500 Sobic006G133900--Sobic003G155100 Sobic006G219600 Sobic006G219600 Sobic006G133900--Sobic006G219600 Sobic003G370700 Sobic003G370700 Sobic006G133900--Sobic003G370700 Sobic002G104100 Sobic002G104100 Sobic006G133900--Sobic002G104100 Sobic008G130100 Sobic008G130100 Sobic006G133900--Sobic008G130100 Sobic006G133900--Sobic006G065600 Sobic006G133900--Sobic003G191700 Sobic003G155100--Sobic008G001200 Sobic003G155100--Sobic006G219600 Sobic010G206900 Sobic010G206900 Sobic003G155100--Sobic010G206900 Sobic001G230000 Sobic001G230000 Sobic003G155100--Sobic001G230000 Sobic003G155100--Sobic001G375100 Sobic001G194200 Sobic001G194200 Sobic003G155100--Sobic001G194200 Sobic010G010700 Sobic010G010700 Sobic003G155100--Sobic010G010700 Sobic009G256400 Sobic009G256400 Sobic003G155100--Sobic009G256400 Sobic004G291900 Sobic004G291900 Sobic003G155100--Sobic004G291900 Sobic001G375100--Sobic003G155100 Sobic001G375100--Sobic008G001200 Sobic005G149200 Sobic005G149200 Sobic001G375100--Sobic005G149200 Sobic003G247500 Sobic003G247500 Sobic001G375100--Sobic003G247500 Sobic001G375100--Sobic001G454500 Sobic001G375100--Sobic010G010700 Sobic002G008900 Sobic002G008900 Sobic001G375100--Sobic002G008900 Sobic001G375100--Sobic007G198300 Sobic005G001000 Sobic005G001000 Sobic001G375100--Sobic005G001000 Sobic003G388100 Sobic003G388100 Sobic001G454500--Sobic003G388100 Sobic001G454500--Sobic008G130100 Sobic001G454500--Sobic006G133900 Sobic001G454500--Sobic001G375100 Sobic001G365900 Sobic001G365900 Sobic001G454500--Sobic001G365900 Sobic001G454500--Sobic008G001200 Sobic001G454500--Sobic010G010700 Sobic001G454500--Sobic003G155100 Sobic001G454500--Sobic003G247500 Sobic004G174200--Sobic004G291900 Sobic002G411600 Sobic002G411600 Sobic004G174200--Sobic002G411600 Sobic004G174200--Sobic008G001200 Sobic004G174200--Sobic010G206900 Sobic004G174200--Sobic002G008900 Sobic001G289800 Sobic001G289800 Sobic004G174200--Sobic001G289800 Sobic004G174200--Sobic005G001000 Sobic003G422500 Sobic003G422500 Sobic004G174200--Sobic003G422500 Sobic004G174200--Sobic001G194200 Sobic006G065600--Sobic004G181600 Sobic007G167100 Sobic007G167100 Sobic006G065600--Sobic007G167100 Sobic006G065600--Sobic006G133900 Sobic006G065600--Sobic002G104100 Sobic006G065600--Sobic008G130100 Sobic006G065600--Sobic001G454500 Sobic007G193700 Sobic007G193700 Sobic006G065600--Sobic007G193700 Sobic004G178500 Sobic004G178500 Sobic006G065600--Sobic004G178500 Sobic006G065600--Sobic001G365900 Sobic008G001200--Sobic003G155100 Sobic008G001200--Sobic010G206900 Sobic008G001200--Sobic009G256400 Sobic003G205200 Sobic003G205200 Sobic008G001200--Sobic003G205200 Sobic008G001200--Sobic010G010700 Sobic008G001200--Sobic001G194200 Sobic008G001200--Sobic005G001000 Sobic004G276400 Sobic004G276400 Sobic008G001200--Sobic004G276400 Sobic008G001200--Sobic004G174200 Sobic001G534700 Sobic001G534700 Sobic003G198800--Sobic001G534700 Sobic009G074400 Sobic009G074400 Sobic003G198800--Sobic009G074400 Sobic003G275700 Sobic003G275700 Sobic003G198800--Sobic003G275700 Sobic006G257800 Sobic006G257800 Sobic003G198800--Sobic006G257800 Sobic003G198800--Sobic003G155100 Sobic001G128300 Sobic001G128300 Sobic003G198800--Sobic001G128300 Sobic001G481900 Sobic001G481900 Sobic003G198800--Sobic001G481900 Sobic008G151100 Sobic008G151100 Sobic003G198800--Sobic008G151100 Sobic003G198800--Sobic002G411600
Octagon: transcription factors


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