Gene annotation
Transcriptome id Sobic.008G006700.1
Synonym
Functional annotation expressed protein
UniProt A0A1B6PAL5
Pfam PF13365 PF00595
Panther DB PTHR22939 PTHR22939:SF91
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G27660 : Trypsin family protein with PDZ domain
RAP-DB (Rice) LOC_Os05g05330.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G058300 expressed protein -
2 Sobic.006G171600 ZOS4-10 - C2H2 zinc finger protein, expressed -
3 Sobic.004G045632 - -
4 Sobic.004G279200 protein phosphatase 2C, putative, expressed K01102: pyruvate dehydrogenase phosphatase
5 Sobic.010G266600 calcium-dependent protein kinase CPK1 adapter protein 2, putative, expressed -
6 Sobic.010G263400 expressed protein -
7 Sobic.001G414650 - K08678: UXS1, UDP-glucuronate decarboxylase
8 Sobic.009G202000 GATA zinc finger domain containing protein, expressed -
9 Sobic.007G144100 eukaryotic translation initiation factor 3 subunit C, putative, expressed K03252: translation initiation factor 3 subunit C
10 Sobic.004G062200 expressed protein -
11 Sobic.009G002100 expressed protein -
12 Sobic.002G307400 MATH domain containing protein, expressed -
13 Sobic.009G121200 stromal membrane-associated protein, putative, expressed K12486: stromal membrane-associated protein
14 Sobic.004G054900 expressed protein -
15 Sobic.001G417700 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
16 Sobic.006G267100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.004G168900 elongation factor Tu family protein, putative, expressed K14536: ribosome assembly protein 1
18 Sobic.001G039100 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
19 Sobic.001G136000 PINHEAD, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
20 Sobic.004G020200 expressed protein -


Gene co-expression network
sample Sobic008G006700 Sobic008G006700 Sobic010G058300 Sobic010G058300 Sobic008G006700--Sobic010G058300 Sobic006G171600 Sobic006G171600 Sobic008G006700--Sobic006G171600 Sobic004G045632 Sobic004G045632 Sobic008G006700--Sobic004G045632 Sobic004G279200 Sobic004G279200 Sobic008G006700--Sobic004G279200 Sobic010G266600 Sobic010G266600 Sobic008G006700--Sobic010G266600 Sobic010G263400 Sobic010G263400 Sobic008G006700--Sobic010G263400 Sobic001G414650 Sobic001G414650 Sobic008G006700--Sobic001G414650 Sobic009G202000 Sobic009G202000 Sobic008G006700--Sobic009G202000 Sobic007G144100 Sobic007G144100 Sobic008G006700--Sobic007G144100 Sobic010G058300--Sobic009G202000 Sobic010G058300--Sobic004G045632 Sobic009G002100 Sobic009G002100 Sobic010G058300--Sobic009G002100 Sobic001G432200 Sobic001G432200 Sobic010G058300--Sobic001G432200 Sobic002G299500 Sobic002G299500 Sobic010G058300--Sobic002G299500 Sobic004G250800 Sobic004G250800 Sobic010G058300--Sobic004G250800 Sobic010G058300--Sobic007G144100 Sobic002G243400 Sobic002G243400 Sobic010G058300--Sobic002G243400 Sobic001G322400 Sobic001G322400 Sobic010G058300--Sobic001G322400 Sobic006G115700 Sobic006G115700 Sobic006G171600--Sobic006G115700 Sobic010G142650 Sobic010G142650 Sobic006G171600--Sobic010G142650 Sobic009G242200 Sobic009G242200 Sobic006G171600--Sobic009G242200 Sobic004G290600 Sobic004G290600 Sobic006G171600--Sobic004G290600 Sobic006G204500 Sobic006G204500 Sobic006G171600--Sobic006G204500 Sobic010G003200 Sobic010G003200 Sobic006G171600--Sobic010G003200 Sobic003G297100 Sobic003G297100 Sobic006G171600--Sobic003G297100 Sobic002G340600 Sobic002G340600 Sobic006G171600--Sobic002G340600 Sobic002G364700 Sobic002G364700 Sobic006G171600--Sobic002G364700 Sobic004G045632--Sobic010G058300 Sobic004G045632--Sobic007G144100 Sobic001G076600 Sobic001G076600 Sobic004G045632--Sobic001G076600 Sobic008G166100 Sobic008G166100 Sobic004G045632--Sobic008G166100 Sobic004G038400 Sobic004G038400 Sobic004G045632--Sobic004G038400 Sobic004G045632--Sobic009G002100 Sobic004G045632--Sobic002G243400 Sobic003G352900 Sobic003G352900 Sobic004G045632--Sobic003G352900 Sobic010G027100 Sobic010G027100 Sobic004G045632--Sobic010G027100 Sobic001G072000 Sobic001G072000 Sobic004G279200--Sobic001G072000 Sobic006G070564 Sobic006G070564 Sobic004G279200--Sobic006G070564 Sobic005G050400 Sobic005G050400 Sobic004G279200--Sobic005G050400 Sobic004G279200--Sobic001G322400 Sobic004G279200--Sobic001G414650 Sobic004G062200 Sobic004G062200 Sobic004G279200--Sobic004G062200 Sobic006G267100 Sobic006G267100 Sobic004G279200--Sobic006G267100 Sobic004G279200--Sobic006G171600 Sobic001G112600 Sobic001G112600 Sobic004G279200--Sobic001G112600 Sobic002G307400 Sobic002G307400 Sobic010G266600--Sobic002G307400 Sobic005G221675 Sobic005G221675 Sobic010G266600--Sobic005G221675 Sobic004G100300 Sobic004G100300 Sobic010G266600--Sobic004G100300 Sobic006G070032 Sobic006G070032 Sobic010G266600--Sobic006G070032 Sobic008G029800 Sobic008G029800 Sobic010G266600--Sobic008G029800 Sobic002G384900 Sobic002G384900 Sobic010G266600--Sobic002G384900 Sobic006G200300 Sobic006G200300 Sobic010G266600--Sobic006G200300 Sobic007G081800 Sobic007G081800 Sobic010G266600--Sobic007G081800 Sobic007G198900 Sobic007G198900 Sobic010G266600--Sobic007G198900 Sobic007G060100 Sobic007G060100 Sobic010G263400--Sobic007G060100 Sobic003G258100 Sobic003G258100 Sobic010G263400--Sobic003G258100 Sobic003G072700 Sobic003G072700 Sobic010G263400--Sobic003G072700 Sobic010G263400--Sobic007G144100 Sobic004G168900 Sobic004G168900 Sobic010G263400--Sobic004G168900 Sobic010G263400--Sobic002G299500 Sobic003G217800 Sobic003G217800 Sobic010G263400--Sobic003G217800 Sobic010G263400--Sobic004G038400 Sobic010G263400--Sobic004G250800 Sobic001G357400 Sobic001G357400 Sobic001G414650--Sobic001G357400 Sobic002G404600 Sobic002G404600 Sobic001G414650--Sobic002G404600 Sobic008G055200 Sobic008G055200 Sobic001G414650--Sobic008G055200 Sobic002G381500 Sobic002G381500 Sobic001G414650--Sobic002G381500 Sobic007G070900 Sobic007G070900 Sobic001G414650--Sobic007G070900 Sobic006G105100 Sobic006G105100 Sobic001G414650--Sobic006G105100 Sobic004G054900 Sobic004G054900 Sobic001G414650--Sobic004G054900 Sobic009G110600 Sobic009G110600 Sobic001G414650--Sobic009G110600 Sobic001G337100 Sobic001G337100 Sobic001G414650--Sobic001G337100 Sobic009G202000--Sobic001G432200 Sobic009G202000--Sobic004G290600 Sobic009G202000--Sobic010G142650 Sobic002G088600 Sobic002G088600 Sobic009G202000--Sobic002G088600 Sobic003G093100 Sobic003G093100 Sobic009G202000--Sobic003G093100 Sobic009G202000--Sobic010G003200 Sobic001G370400 Sobic001G370400 Sobic009G202000--Sobic001G370400 Sobic009G202000--Sobic006G171600 Sobic004G177900 Sobic004G177900 Sobic009G202000--Sobic004G177900 Sobic007G144100--Sobic003G258100 Sobic007G144100--Sobic003G352900 Sobic007G144100--Sobic001G076600 Sobic007G144100--Sobic003G217800 Sobic007G144100--Sobic010G058300 Sobic001G506400 Sobic001G506400 Sobic007G144100--Sobic001G506400 Sobic007G144100--Sobic002G299500 Sobic007G144100--Sobic004G045632 Sobic007G144100--Sobic004G038400
Octagon: transcription factors


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