Gene annotation
Transcriptome id Sobic.008G056350.1
Synonym -
Functional annotation -
UniProt A0A1Z5R5V5
Pfam PF00646
Panther DB PTHR32133 PTHR32133:SF82
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G47300 : F-box family protein
RAP-DB (Rice) LOC_Os07g35060.2 : OsFBX238 - F-box domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQK17005 , KQK17006 , KQK17009
Barley HORVU3Hr1G011500.1
Wheat TraesCS7D02G468100 , TraesCS7B02G383500 , TraesCS7D02G467700 , TraesCS7D02G467300 , TraesCS7A02G480400 , TraesCS7A02G481200 , TraesCS7D02G467900 , TraesCS7D02G467800 , TraesCS7B02G383300 , TraesCS7B02G382500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G050500 type I inositol-1,4,5-trisphosphate 5-phosphatase, putative, expressed -
2 Sobic.001G454301 - -
3 Sobic.009G239351 - -
4 Sobic.002G421700 OsFBX368 - F-box domain containing protein, expressed -
5 Sobic.002G060450 - -
6 Sobic.009G239301 - -
7 Sobic.002G223300 nucleoporin p58/p45, putative, expressed K14307: NUPL1, nucleoporin p58/p45
8 Sobic.006G217200 PPR repeat domain containing protein, putative, expressed -
9 Sobic.002G140800 RNA pseudouridine synthase, putative, expressed -
10 Sobic.007G116400 - -
11 Sobic.006G210200 zinc finger domain, LSD1 subclass family protein, expressed -
12 Sobic.004G085300 Sel1 repeat domain containing protein, putative, expressed -
13 Sobic.007G046900 MBTB32 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
14 Sobic.003G152500 expressed protein -
15 Sobic.003G128600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNAJ heat shock N-terminal domain-containing protein, putative, expressed K09527: DnaJ homolog subfamily C member 7
16 Sobic.008G117200 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
17 Sobic.004G088400 GTPase-activating protein, putative, expressed -
18 Sobic.001G045700 "CESA3-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@CESA2 - cellulose synthase, expressed K10999: cellulose synthase A
19 Sobic.002G073300 - -
20 Sobic.006G039900 - -


Gene co-expression network
sample Sobic008G056350 Sobic008G056350 Sobic002G050500 Sobic002G050500 Sobic008G056350--Sobic002G050500 Sobic001G454301 Sobic001G454301 Sobic008G056350--Sobic001G454301 Sobic009G239351 Sobic009G239351 Sobic008G056350--Sobic009G239351 Sobic002G421700 Sobic002G421700 Sobic008G056350--Sobic002G421700 Sobic002G060450 Sobic002G060450 Sobic008G056350--Sobic002G060450 Sobic009G239301 Sobic009G239301 Sobic008G056350--Sobic009G239301 Sobic002G223300 Sobic002G223300 Sobic008G056350--Sobic002G223300 Sobic006G217200 Sobic006G217200 Sobic008G056350--Sobic006G217200 Sobic002G140800 Sobic002G140800 Sobic008G056350--Sobic002G140800 Sobic006G210200 Sobic006G210200 Sobic002G050500--Sobic006G210200 Sobic001G268700 Sobic001G268700 Sobic002G050500--Sobic001G268700 Sobic002G050500--Sobic002G140800 Sobic002G050500--Sobic008G056350 Sobic001G045700 Sobic001G045700 Sobic002G050500--Sobic001G045700 Sobic002G050500--Sobic002G060450 Sobic002G050500--Sobic001G454301 Sobic002G050500--Sobic002G223300 Sobic003G128600 Sobic003G128600 Sobic002G050500--Sobic003G128600 Sobic007G116400 Sobic007G116400 Sobic001G454301--Sobic007G116400 Sobic001G454301--Sobic002G421700 Sobic008G117200 Sobic008G117200 Sobic001G454301--Sobic008G117200 Sobic001G094000 Sobic001G094000 Sobic001G454301--Sobic001G094000 Sobic009G104300 Sobic009G104300 Sobic001G454301--Sobic009G104300 Sobic001G454301--Sobic009G239351 Sobic001G303675 Sobic001G303675 Sobic001G454301--Sobic001G303675 Sobic001G454301--Sobic002G140800 Sobic001G454301--Sobic006G217200 Sobic009G239351--Sobic007G116400 Sobic009G239351--Sobic001G454301 Sobic009G239351--Sobic009G239301 Sobic009G239351--Sobic006G210200 Sobic009G239351--Sobic009G104300 Sobic009G239351--Sobic001G094000 Sobic003G170100 Sobic003G170100 Sobic009G239351--Sobic003G170100 Sobic001G162300 Sobic001G162300 Sobic009G239351--Sobic001G162300 Sobic009G239351--Sobic001G303675 Sobic008G034600 Sobic008G034600 Sobic002G421700--Sobic008G034600 Sobic002G421700--Sobic008G117200 Sobic002G421700--Sobic001G454301 Sobic002G061400 Sobic002G061400 Sobic002G421700--Sobic002G061400 Sobic005G015900 Sobic005G015900 Sobic002G421700--Sobic005G015900 Sobic008G129700 Sobic008G129700 Sobic002G421700--Sobic008G129700 Sobic002G421700--Sobic007G116400 Sobic002G421700--Sobic001G094000 Sobic002G421700--Sobic006G217200 Sobic003G185250 Sobic003G185250 Sobic002G060450--Sobic003G185250 Sobic002G049000 Sobic002G049000 Sobic002G060450--Sobic002G049000 Sobic007G046900 Sobic007G046900 Sobic002G060450--Sobic007G046900 Sobic002G060450--Sobic006G210200 Sobic006G006500 Sobic006G006500 Sobic002G060450--Sobic006G006500 Sobic002G060450--Sobic001G045700 Sobic002G060450--Sobic002G050500 Sobic006G022500 Sobic006G022500 Sobic002G060450--Sobic006G022500 Sobic003G346000 Sobic003G346000 Sobic002G060450--Sobic003G346000 Sobic009G239301--Sobic009G239351 Sobic009G239301--Sobic001G454301 Sobic010G153466 Sobic010G153466 Sobic009G239301--Sobic010G153466 Sobic009G239301--Sobic007G046900 Sobic006G252000 Sobic006G252000 Sobic009G239301--Sobic006G252000 Sobic009G239301--Sobic006G210200 Sobic009G239301--Sobic007G116400 Sobic009G239301--Sobic006G217200 Sobic006G013500 Sobic006G013500 Sobic009G239301--Sobic006G013500 Sobic002G334600 Sobic002G334600 Sobic002G223300--Sobic002G334600 Sobic004G085300 Sobic004G085300 Sobic002G223300--Sobic004G085300 Sobic009G151200 Sobic009G151200 Sobic002G223300--Sobic009G151200 Sobic003G132700 Sobic003G132700 Sobic002G223300--Sobic003G132700 Sobic002G223300--Sobic007G046900 Sobic004G285000 Sobic004G285000 Sobic002G223300--Sobic004G285000 Sobic002G223300--Sobic006G210200 Sobic002G223300--Sobic002G050500 Sobic002G339800 Sobic002G339800 Sobic002G223300--Sobic002G339800 Sobic006G217200--Sobic001G454301 Sobic006G217200--Sobic002G421700 Sobic005G133500 Sobic005G133500 Sobic006G217200--Sobic005G133500 Sobic002G259800 Sobic002G259800 Sobic006G217200--Sobic002G259800 Sobic007G000800 Sobic007G000800 Sobic006G217200--Sobic007G000800 Sobic003G239900 Sobic003G239900 Sobic006G217200--Sobic003G239900 Sobic006G217200--Sobic009G151200 Sobic005G009200 Sobic005G009200 Sobic006G217200--Sobic005G009200 Sobic006G217200--Sobic006G013500 Sobic002G140800--Sobic001G454301 Sobic002G140800--Sobic003G128600 Sobic004G169501 Sobic004G169501 Sobic002G140800--Sobic004G169501 Sobic002G140800--Sobic007G116400 Sobic004G088400 Sobic004G088400 Sobic002G140800--Sobic004G088400 Sobic002G140800--Sobic002G050500 Sobic010G139301 Sobic010G139301 Sobic002G140800--Sobic010G139301 Sobic002G140800--Sobic008G117200 Sobic009G059600 Sobic009G059600 Sobic002G140800--Sobic009G059600
Octagon: transcription factors


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