Gene annotation
Transcriptome id Sobic.009G102200.2
Synonym AGL62
Functional annotation OsMADS75 - MADS-box family gene with M-alpha type-box, expressed
UniProt A0A1B6P7U6
Pfam PF00319
Panther DB PTHR11945 PTHR11945:SF232
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT5G60440 : AGAMOUS-like 62
RAP-DB (Rice) LOC_Os06g30810.1 : OsMADS75 - MADS-box family gene with M-alpha type-box, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G174601 - -
2 Sobic.005G130500 terpene synthase, putative, expressed -
3 Sobic.005G203400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NBS-LRR type disease resistance protein, putative, expressed -
4 Sobic.010G104200 zinc finger, C3HC4 type domain containing protein, expressed -
5 Sobic.007G132600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
6 Sobic.003G311250 - -
7 Sobic.008G182500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@thaumatin, putative, expressed -
8 Sobic.006G109200 expressed protein -
9 Sobic.003G057800 rho termination factor, N-terminal domain containing protein, expressed -
10 Sobic.003G097900 seven in absentia protein family domain containing protein, expressed -
11 Sobic.005G149000 astaxanthin synthase KC28, putative, expressed -
12 Sobic.006G141100 OsFBO6 - F-box and other domain containing protein, expressed -
13 Sobic.003G357500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@laccase precursor protein, putative, expressed K05909: laccase
14 Sobic.009G107500 - -
15 Sobic.010G063433 - -
16 Sobic.010G069300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450 72A1, putative, expressed K15639: CYP734A1, PHYB activation tagged suppressor 1
17 Sobic.004G020401 - -
18 Sobic.008G145400 expressed protein -
19 Sobic.004G080700 - -
20 Sobic.002G051000 expressed protein K08857: NIMA (never in mitosis gene a)-related kinase 1/4/5


Gene co-expression network
sample Sobic009G102200 Sobic009G102200 Sobic003G174601 Sobic003G174601 Sobic009G102200--Sobic003G174601 Sobic005G130500 Sobic005G130500 Sobic009G102200--Sobic005G130500 Sobic005G203400 Sobic005G203400 Sobic009G102200--Sobic005G203400 Sobic010G104200 Sobic010G104200 Sobic009G102200--Sobic010G104200 Sobic007G132600 Sobic007G132600 Sobic009G102200--Sobic007G132600 Sobic003G311250 Sobic003G311250 Sobic009G102200--Sobic003G311250 Sobic008G182500 Sobic008G182500 Sobic009G102200--Sobic008G182500 Sobic006G109200 Sobic006G109200 Sobic009G102200--Sobic006G109200 Sobic003G057800 Sobic003G057800 Sobic009G102200--Sobic003G057800 Sobic003G174601--Sobic005G130500 Sobic003G174601--Sobic009G102200 Sobic004G080700 Sobic004G080700 Sobic003G174601--Sobic004G080700 Sobic008G145400 Sobic008G145400 Sobic003G174601--Sobic008G145400 Sobic004G120866 Sobic004G120866 Sobic003G174601--Sobic004G120866 Sobic003G174601--Sobic003G311250 Sobic003G174601--Sobic010G104200 Sobic006G141100 Sobic006G141100 Sobic003G174601--Sobic006G141100 Sobic005G117901 Sobic005G117901 Sobic003G174601--Sobic005G117901 Sobic005G130500--Sobic008G145400 Sobic005G130500--Sobic003G174601 Sobic005G130500--Sobic004G120866 Sobic006G167250 Sobic006G167250 Sobic005G130500--Sobic006G167250 Sobic005G130500--Sobic010G104200 Sobic007G111901 Sobic007G111901 Sobic005G130500--Sobic007G111901 Sobic006G045800 Sobic006G045800 Sobic005G130500--Sobic006G045800 Sobic005G130500--Sobic004G080700 Sobic001G216900 Sobic001G216900 Sobic005G130500--Sobic001G216900 Sobic005G212600 Sobic005G212600 Sobic005G203400--Sobic005G212600 Sobic002G062300 Sobic002G062300 Sobic005G203400--Sobic002G062300 Sobic008G031350 Sobic008G031350 Sobic005G203400--Sobic008G031350 Sobic009G113600 Sobic009G113600 Sobic005G203400--Sobic009G113600 Sobic008G009500 Sobic008G009500 Sobic005G203400--Sobic008G009500 Sobic007G073400 Sobic007G073400 Sobic005G203400--Sobic007G073400 Sobic006G132200 Sobic006G132200 Sobic005G203400--Sobic006G132200 Sobic001G253100 Sobic001G253100 Sobic005G203400--Sobic001G253100 Sobic009G196700 Sobic009G196700 Sobic005G203400--Sobic009G196700 Sobic006G055100 Sobic006G055100 Sobic010G104200--Sobic006G055100 Sobic005G149000 Sobic005G149000 Sobic010G104200--Sobic005G149000 Sobic010G063433 Sobic010G063433 Sobic010G104200--Sobic010G063433 Sobic002G007250 Sobic002G007250 Sobic010G104200--Sobic002G007250 Sobic010G104200--Sobic008G009500 SobicK024000 SobicK024000 Sobic010G104200--SobicK024000 Sobic010G104200--Sobic008G031350 Sobic010G104200--Sobic005G203400 Sobic010G104200--Sobic009G113600 Sobic008G079100 Sobic008G079100 Sobic007G132600--Sobic008G079100 Sobic001G287301 Sobic001G287301 Sobic007G132600--Sobic001G287301 Sobic005G139800 Sobic005G139800 Sobic007G132600--Sobic005G139800 Sobic007G132600--Sobic002G007250 Sobic009G209800 Sobic009G209800 Sobic007G132600--Sobic009G209800 Sobic002G410200 Sobic002G410200 Sobic007G132600--Sobic002G410200 Sobic008G042250 Sobic008G042250 Sobic007G132600--Sobic008G042250 Sobic004G076732 Sobic004G076732 Sobic007G132600--Sobic004G076732 Sobic008G049701 Sobic008G049701 Sobic007G132600--Sobic008G049701 Sobic003G311250--Sobic010G063433 Sobic003G311250--Sobic008G182500 Sobic002G284600 Sobic002G284600 Sobic003G311250--Sobic002G284600 Sobic003G311250--Sobic008G049701 Sobic003G311250--Sobic005G139800 Sobic003G311250--Sobic009G209800 Sobic003G311250--Sobic001G287301 Sobic001G128800 Sobic001G128800 Sobic003G311250--Sobic001G128800 Sobic002G221200 Sobic002G221200 Sobic003G311250--Sobic002G221200 Sobic008G182500--Sobic006G132200 Sobic008G108900 Sobic008G108900 Sobic008G182500--Sobic008G108900 Sobic008G182500--Sobic009G196700 Sobic008G182500--Sobic005G203400 Sobic008G182500--Sobic005G212600 Sobic008G182500--Sobic002G062300 Sobic008G182500--Sobic009G113600 Sobic007G115000 Sobic007G115000 Sobic008G182500--Sobic007G115000 Sobic009G109101 Sobic009G109101 Sobic008G182500--Sobic009G109101 Sobic001G102200 Sobic001G102200 Sobic006G109200--Sobic001G102200 Sobic006G095100 Sobic006G095100 Sobic006G109200--Sobic006G095100 Sobic007G194200 Sobic007G194200 Sobic006G109200--Sobic007G194200 Sobic007G130500 Sobic007G130500 Sobic006G109200--Sobic007G130500 Sobic003G124000 Sobic003G124000 Sobic006G109200--Sobic003G124000 Sobic001G408500 Sobic001G408500 Sobic006G109200--Sobic001G408500 Sobic001G041900 Sobic001G041900 Sobic006G109200--Sobic001G041900 Sobic006G109200--Sobic006G141100 Sobic006G109200--Sobic009G102200 Sobic001G479500 Sobic001G479500 Sobic003G057800--Sobic001G479500 Sobic003G357500 Sobic003G357500 Sobic003G057800--Sobic003G357500 Sobic010G248200 Sobic010G248200 Sobic003G057800--Sobic010G248200 Sobic008G161401 Sobic008G161401 Sobic003G057800--Sobic008G161401 Sobic004G212800 Sobic004G212800 Sobic003G057800--Sobic004G212800 Sobic005G130200 Sobic005G130200 Sobic003G057800--Sobic005G130200 Sobic003G057800--Sobic007G073400 Sobic004G016500 Sobic004G016500 Sobic003G057800--Sobic004G016500 Sobic001G046600 Sobic001G046600 Sobic003G057800--Sobic001G046600
Octagon: transcription factors


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