Gene annotation
Transcriptome id Sobic.009G157300.1
Synonym Sb09g022050
Functional annotation Probable beta-D-xylosidase 2 (Precursor) (PubMedID : 26186930)
periplasmic beta-glucosidase precursor, putative, expressed
UniProt A0A1B6P8X8
Pfam PF01915 PF00933
Panther DB PTHR30620 PTHR30620:SF33
NCBI CDD -
KEGG Orthology K05349; beta-glucosidase
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT3G47000 : Glycosyl hydrolase family protein
RAP-DB (Rice) LOC_Os05g37700.1 : periplasmic beta-glucosidase precursor, putative, expressed
MaizeGDB (Corn) Zm00025a043783 , Zm00025a043784
Brachypodium KQK13203 , KQK13202 , KQK13201 , KQK13200 , KQK13199 , KQK05981
Barley HORVU1Hr1G073280.3 , HORVU1Hr1G073280.1 , HORVU1Hr1G073280.7 , HORVU1Hr1G073280.6 , HORVU1Hr1G073280.4 , HORVU2Hr1G107600.4 , HORVU2Hr1G107600.5 , HORVU2Hr1G107600.6 , HORVU2Hr1G107600.7 , HORVU2Hr1G107600.1 , HORVU2Hr1G107600.2 , HORVU2Hr1G107600.3 , HORVU2Hr1G107600.8 , HORVU1Hr1G073280.9 , HORVU1Hr1G073280.8 , HORVU1Hr1G073280.2 , HORVU1Hr1G073280.5 , HORVU1Hr1G073280.10
Wheat TraesCS2B02G503000 , TraesCS2B02G503000 , TraesCS1A02G279000 , TraesCS1A02G279000 , TraesCS1A02G279000 , TraesCS1B02G288000 , TraesCS1B02G288000 , TraesCS1B02G288000 , TraesCS2D02G477800 , TraesCS2A02G478500 , TraesCS1A02G279000 , TraesCS1D02G278300 , TraesCS1D02G278300 , TraesCS1D02G278300 , TraesCS1D02G278300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G157300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G240500 flavoprotein wrbA, putative, expressed K03809: NAD(P)H dehydrogenase (quinone)
2 Sobic.004G059600 DUF581 domain containing protein, expressed -
3 Sobic.009G221900 seed storage 2S albumin superfamily("PubMedID : 26759170,PubMedID : 24597475")@LTPL152 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
4 Sobic.006G156600 transporter family protein, putative, expressed -
5 Sobic.002G167000 "C3 PTPC, housekeeping gene"(PubMedID : 2308851)@phosphoenolphyruvate carboxylase(PubMedID : 26904072)@phosphoenolpyruvate carboxylase, putative, expressed K01595: phosphoenolpyruvate carboxylase
6 Sobic.005G022500 alpha-N-arabinofuranosidase A, putative, expressed K01209: alpha-L-arabinofuranosidase
7 Sobic.003G287450 - -
8 Sobic.003G105000 kinase, pfkB family, putative, expressed -
9 Sobic.001G263900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@dehydrogenase, putative, expressed K00001: E1.1.1.1, alcohol dehydrogenase
10 Sobic.007G020700 ACT domain containing protein, expressed -
11 Sobic.007G157900 gibberellin receptor GID1L2, putative, expressed -
12 Sobic.007G038600 monodehydroascorbate reductase, putative, expressed K08232: monodehydroascorbate reductase (NADH)
13 Sobic.006G038200 receptor protein kinase, putative, expressed -
14 Sobic.001G002800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein -
15 Sobic.008G133000 expressed protein -
16 Sobic.001G365200 aminotransferase domain containing protein, putative, expressed -
17 Sobic.007G047300 encodes the lignin biosynthetic enzyme caffeic acid O-methyltransferase (COMT)(PubMedID : 20585750)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylate the tricin precursors luteolin and selgin(PubMedID : 28594846)@monolignol biosynthetic enzyme caffeic acid O-methyl transferase (COMT)(PubMedID : 12756532)@lignin biosynthesis(PubMedID : 12756532)@key enzymes in the phenylptropanoid pathway(PubMedID : 28119720)@O-methyltransferase, putative, expressed K05279: flavonol 3-O-methyltransferase
18 Sobic.002G383900 sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase
19 Sobic.007G106500 "C3 PTPC, unknown so far"(PubMedID : 2308851)@phosphoenolpyruvate carboxylase, putative, expressed K01595: phosphoenolpyruvate carboxylase
20 Sobic.003G182400 DNA-damage-repair/toleration protein DRT102, putative, expressed -


Gene co-expression network
sample Sobic009G157300 Sobic009G157300 Sobic001G240500 Sobic001G240500 Sobic009G157300--Sobic001G240500 Sobic004G059600 Sobic004G059600 Sobic009G157300--Sobic004G059600 Sobic009G221900 Sobic009G221900 Sobic009G157300--Sobic009G221900 Sobic006G156600 Sobic006G156600 Sobic009G157300--Sobic006G156600 Sobic002G167000 Sobic002G167000 Sobic009G157300--Sobic002G167000 Sobic005G022500 Sobic005G022500 Sobic009G157300--Sobic005G022500 Sobic003G287450 Sobic003G287450 Sobic009G157300--Sobic003G287450 Sobic003G105000 Sobic003G105000 Sobic009G157300--Sobic003G105000 Sobic001G263900 Sobic001G263900 Sobic009G157300--Sobic001G263900 Sobic006G028400 Sobic006G028400 Sobic001G240500--Sobic006G028400 Sobic006G183900 Sobic006G183900 Sobic001G240500--Sobic006G183900 Sobic010G212200 Sobic010G212200 Sobic001G240500--Sobic010G212200 Sobic001G240500--Sobic009G157300 Sobic007G157900 Sobic007G157900 Sobic001G240500--Sobic007G157900 Sobic002G271300 Sobic002G271300 Sobic001G240500--Sobic002G271300 Sobic004G071000 Sobic004G071000 Sobic001G240500--Sobic004G071000 Sobic002G365500 Sobic002G365500 Sobic001G240500--Sobic002G365500 Sobic001G284600 Sobic001G284600 Sobic001G240500--Sobic001G284600 Sobic003G028300 Sobic003G028300 Sobic004G059600--Sobic003G028300 Sobic004G323900 Sobic004G323900 Sobic004G059600--Sobic004G323900 Sobic004G106300 Sobic004G106300 Sobic004G059600--Sobic004G106300 Sobic004G059600--Sobic003G287450 Sobic010G115600 Sobic010G115600 Sobic004G059600--Sobic010G115600 Sobic004G059600--Sobic001G263900 Sobic004G059600--Sobic006G028400 Sobic003G203600 Sobic003G203600 Sobic004G059600--Sobic003G203600 Sobic007G192000 Sobic007G192000 Sobic004G059600--Sobic007G192000 Sobic009G221900--Sobic001G263900 Sobic002G347300 Sobic002G347300 Sobic009G221900--Sobic002G347300 Sobic009G017500 Sobic009G017500 Sobic009G221900--Sobic009G017500 Sobic003G099166 Sobic003G099166 Sobic009G221900--Sobic003G099166 Sobic003G371400 Sobic003G371400 Sobic009G221900--Sobic003G371400 Sobic008G091557 Sobic008G091557 Sobic009G221900--Sobic008G091557 Sobic001G208600 Sobic001G208600 Sobic009G221900--Sobic001G208600 Sobic002G030800 Sobic002G030800 Sobic009G221900--Sobic002G030800 Sobic002G207000 Sobic002G207000 Sobic009G221900--Sobic002G207000 Sobic004G257800 Sobic004G257800 Sobic006G156600--Sobic004G257800 Sobic007G009500 Sobic007G009500 Sobic006G156600--Sobic007G009500 Sobic002G075500 Sobic002G075500 Sobic006G156600--Sobic002G075500 Sobic004G007600 Sobic004G007600 Sobic006G156600--Sobic004G007600 Sobic001G108350 Sobic001G108350 Sobic006G156600--Sobic001G108350 Sobic001G132800 Sobic001G132800 Sobic006G156600--Sobic001G132800 Sobic009G125900 Sobic009G125900 Sobic006G156600--Sobic009G125900 Sobic003G254700 Sobic003G254700 Sobic006G156600--Sobic003G254700 Sobic007G054500 Sobic007G054500 Sobic006G156600--Sobic007G054500 Sobic002G376100 Sobic002G376100 Sobic002G167000--Sobic002G376100 Sobic002G167000--Sobic002G207000 Sobic001G002800 Sobic001G002800 Sobic002G167000--Sobic001G002800 Sobic006G108300 Sobic006G108300 Sobic002G167000--Sobic006G108300 Sobic007G172500 Sobic007G172500 Sobic002G167000--Sobic007G172500 Sobic002G081850 Sobic002G081850 Sobic002G167000--Sobic002G081850 Sobic002G167000--Sobic005G022500 Sobic002G254900 Sobic002G254900 Sobic002G167000--Sobic002G254900 Sobic002G167000--Sobic003G287450 Sobic001G506600 Sobic001G506600 Sobic005G022500--Sobic001G506600 Sobic005G219700 Sobic005G219700 Sobic005G022500--Sobic005G219700 Sobic005G022500--Sobic001G002800 Sobic001G503000 Sobic001G503000 Sobic005G022500--Sobic001G503000 Sobic007G020700 Sobic007G020700 Sobic005G022500--Sobic007G020700 Sobic001G163800 Sobic001G163800 Sobic005G022500--Sobic001G163800 Sobic008G133000 Sobic008G133000 Sobic005G022500--Sobic008G133000 Sobic005G022500--Sobic007G172500 Sobic005G022500--Sobic002G376100 Sobic002G259100 Sobic002G259100 Sobic003G287450--Sobic002G259100 Sobic003G287450--Sobic001G503000 Sobic005G115300 Sobic005G115300 Sobic003G287450--Sobic005G115300 Sobic004G312200 Sobic004G312200 Sobic003G287450--Sobic004G312200 Sobic006G009700 Sobic006G009700 Sobic003G287450--Sobic006G009700 Sobic005G071900 Sobic005G071900 Sobic003G287450--Sobic005G071900 Sobic001G218500 Sobic001G218500 Sobic003G287450--Sobic001G218500 Sobic004G312500 Sobic004G312500 Sobic003G287450--Sobic004G312500 Sobic003G287400 Sobic003G287400 Sobic003G287450--Sobic003G287400 Sobic001G365200 Sobic001G365200 Sobic003G105000--Sobic001G365200 Sobic004G193500 Sobic004G193500 Sobic003G105000--Sobic004G193500 Sobic005G127200 Sobic005G127200 Sobic003G105000--Sobic005G127200 Sobic003G428300 Sobic003G428300 Sobic003G105000--Sobic003G428300 Sobic010G093300 Sobic010G093300 Sobic003G105000--Sobic010G093300 Sobic003G157700 Sobic003G157700 Sobic003G105000--Sobic003G157700 Sobic003G255600 Sobic003G255600 Sobic003G105000--Sobic003G255600 Sobic010G187500 Sobic010G187500 Sobic003G105000--Sobic010G187500 Sobic002G030650 Sobic002G030650 Sobic003G105000--Sobic002G030650 Sobic001G263900--Sobic009G221900 Sobic001G263900--Sobic003G099166 Sobic001G250100 Sobic001G250100 Sobic001G263900--Sobic001G250100 Sobic001G263900--Sobic009G017500 Sobic002G383900 Sobic002G383900 Sobic001G263900--Sobic002G383900 Sobic001G263900--Sobic002G030800 Sobic001G471800 Sobic001G471800 Sobic001G263900--Sobic001G471800 Sobic002G085800 Sobic002G085800 Sobic001G263900--Sobic002G085800 Sobic007G047300 Sobic007G047300 Sobic001G263900--Sobic007G047300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.