Gene annotation
Transcriptome id Sobic.009G205300.1
Synonym Sb09g026210, RTNLB1, BTI1
Functional annotation reticulon domain containing protein, putative, expressed
UniProt C5Z1E9
Pfam PF02453
Panther DB PTHR10994 PTHR10994:SF78
NCBI CDD KOG1792; Reticulon
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G23630 : VIRB2-interacting protein 1
RAP-DB (Rice) LOC_Os05g45050.1 : reticulon domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a027683 , Zm00025a044286
Brachypodium KQK05289
Barley HORVU3Hr1G069970.4 , HORVU3Hr1G069970.5 , HORVU3Hr1G069970.6 , HORVU3Hr1G069970.7 , HORVU3Hr1G069970.1 , HORVU3Hr1G069970.2 , HORVU3Hr1G069970.3 , HORVU3Hr1G069970.8 , HORVU1Hr1G082010.2 , HORVU1Hr1G082010.3 , HORVU1Hr1G082010.1
Wheat TraesCS1D02G349700 , TraesCS3D02G279100 , TraesCS3A02G278800 , TraesCS3B02G313000 , TraesCS1A02G346800 , TraesCS1A02G346800 , TraesCS1A02G346800 , TraesCS1B02G360800
Populus -


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cDNA sequences
Sobic.009G205300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G261549 - -
2 Sobic.009G194900 glucan endo-1,3-beta-glucosidase-like protein 3 precursor, putative, expressed -
3 Sobic.004G285900 HMG1/2, putative, expressed -
4 Sobic.006G102900 expressed protein -
5 Sobic.002G351100 DNA repair protein Rad51, putative, expressed K04482: DNA repair protein RAD51
6 Sobic.004G070900 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
7 Sobic.003G107200 SNF7 domain containing protein, putative, expressed K12198: CHMP5, charged multivesicular body protein 5
8 Sobic.006G200000 RNA recognition motif, putative, expressed -
9 Sobic.002G230800 expressed protein -
10 Sobic.001G238900 OsFBX386 - F-box domain containing protein, expressed -
11 Sobic.003G279100 mitochondrial ATP synthase g subunit family protein, putative, expressed K02140: ATPeFG, ATP5L, F-type H+-transporting ATPase subunit g
12 Sobic.007G154500 F-box protein, putative, expressed -
13 Sobic.006G083000 CAMK_CAMK_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
14 Sobic.010G265900 novel plant SNARE 11, putative, expressed K08494: novel plant SNARE
15 Sobic.001G300400 expansin precursor, putative, expressed -
16 Sobic.002G246900 expressed protein -
17 Sobic.004G217450 - -
18 Sobic.004G047100 EH domain-containing protein 1, putative, expressed K12483: EH domain-containing protein 1
19 Sobic.006G120700 N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, putative, expressed K03434: N-acetylglucosaminylphosphatidylinositol deacetylase
20 Sobic.003G244000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase


Gene co-expression network
sample Sobic009G205300 Sobic009G205300 Sobic001G261549 Sobic001G261549 Sobic009G205300--Sobic001G261549 Sobic009G194900 Sobic009G194900 Sobic009G205300--Sobic009G194900 Sobic004G285900 Sobic004G285900 Sobic009G205300--Sobic004G285900 Sobic006G102900 Sobic006G102900 Sobic009G205300--Sobic006G102900 Sobic002G351100 Sobic002G351100 Sobic009G205300--Sobic002G351100 Sobic004G070900 Sobic004G070900 Sobic009G205300--Sobic004G070900 Sobic003G107200 Sobic003G107200 Sobic009G205300--Sobic003G107200 Sobic006G200000 Sobic006G200000 Sobic009G205300--Sobic006G200000 Sobic002G230800 Sobic002G230800 Sobic009G205300--Sobic002G230800 Sobic001G261549--Sobic006G102900 Sobic001G261549--Sobic004G285900 Sobic009G189200 Sobic009G189200 Sobic001G261549--Sobic009G189200 Sobic006G191700 Sobic006G191700 Sobic001G261549--Sobic006G191700 Sobic001G261549--Sobic009G194900 Sobic001G261549--Sobic003G107200 Sobic001G078600 Sobic001G078600 Sobic001G261549--Sobic001G078600 Sobic007G154500 Sobic007G154500 Sobic001G261549--Sobic007G154500 Sobic008G096200 Sobic008G096200 Sobic001G261549--Sobic008G096200 Sobic009G194900--Sobic001G261549 Sobic009G194900--Sobic002G351100 Sobic009G194900--Sobic006G102900 Sobic009G194900--Sobic003G107200 Sobic001G255600 Sobic001G255600 Sobic009G194900--Sobic001G255600 Sobic006G134200 Sobic006G134200 Sobic009G194900--Sobic006G134200 Sobic009G194900--Sobic002G230800 Sobic002G246900 Sobic002G246900 Sobic009G194900--Sobic002G246900 Sobic004G047100 Sobic004G047100 Sobic009G194900--Sobic004G047100 Sobic004G285900--Sobic001G078600 Sobic004G285900--Sobic001G261549 Sobic004G279601 Sobic004G279601 Sobic004G285900--Sobic004G279601 Sobic007G214700 Sobic007G214700 Sobic004G285900--Sobic007G214700 Sobic004G285900--Sobic006G102900 Sobic002G162300 Sobic002G162300 Sobic004G285900--Sobic002G162300 Sobic004G285900--Sobic007G154500 Sobic004G285900--Sobic009G189200 Sobic001G205000 Sobic001G205000 Sobic004G285900--Sobic001G205000 Sobic006G102900--Sobic001G078600 Sobic006G102900--Sobic003G107200 Sobic009G181500 Sobic009G181500 Sobic006G102900--Sobic009G181500 Sobic006G102900--Sobic001G261549 Sobic006G102900--Sobic007G154500 Sobic002G426800 Sobic002G426800 Sobic006G102900--Sobic002G426800 Sobic010G274000 Sobic010G274000 Sobic006G102900--Sobic010G274000 Sobic006G102900--Sobic004G047100 Sobic006G102900--Sobic009G189200 Sobic001G300400 Sobic001G300400 Sobic002G351100--Sobic001G300400 Sobic003G297200 Sobic003G297200 Sobic002G351100--Sobic003G297200 Sobic001G521100 Sobic001G521100 Sobic002G351100--Sobic001G521100 Sobic003G244000 Sobic003G244000 Sobic002G351100--Sobic003G244000 Sobic002G315400 Sobic002G315400 Sobic002G351100--Sobic002G315400 Sobic002G351100--Sobic009G194900 Sobic001G440900 Sobic001G440900 Sobic002G351100--Sobic001G440900 Sobic002G351100--Sobic002G246900 Sobic001G238900 Sobic001G238900 Sobic002G351100--Sobic001G238900 Sobic007G017700 Sobic007G017700 Sobic004G070900--Sobic007G017700 Sobic001G157700 Sobic001G157700 Sobic004G070900--Sobic001G157700 Sobic007G129300 Sobic007G129300 Sobic004G070900--Sobic007G129300 Sobic002G289800 Sobic002G289800 Sobic004G070900--Sobic002G289800 Sobic002G343600 Sobic002G343600 Sobic004G070900--Sobic002G343600 Sobic009G120700 Sobic009G120700 Sobic004G070900--Sobic009G120700 Sobic010G202100 Sobic010G202100 Sobic004G070900--Sobic010G202100 Sobic004G070900--Sobic001G300400 Sobic006G081800 Sobic006G081800 Sobic004G070900--Sobic006G081800 Sobic003G107200--Sobic006G102900 Sobic003G107200--Sobic002G246900 Sobic003G107200--Sobic004G047100 Sobic003G107200--Sobic009G181500 Sobic003G107200--Sobic001G261549 Sobic003G107200--Sobic007G154500 Sobic003G107200--Sobic001G078600 Sobic002G236700 Sobic002G236700 Sobic003G107200--Sobic002G236700 Sobic003G107200--Sobic002G426800 Sobic006G120700 Sobic006G120700 Sobic006G200000--Sobic006G120700 Sobic005G080900 Sobic005G080900 Sobic006G200000--Sobic005G080900 Sobic003G396600 Sobic003G396600 Sobic006G200000--Sobic003G396600 Sobic010G265900 Sobic010G265900 Sobic006G200000--Sobic010G265900 Sobic003G034600 Sobic003G034600 Sobic006G200000--Sobic003G034600 Sobic010G115200 Sobic010G115200 Sobic006G200000--Sobic010G115200 Sobic006G083000 Sobic006G083000 Sobic006G200000--Sobic006G083000 Sobic003G300900 Sobic003G300900 Sobic006G200000--Sobic003G300900 Sobic001G410200 Sobic001G410200 Sobic006G200000--Sobic001G410200 Sobic002G230800--Sobic001G238900 Sobic010G105400 Sobic010G105400 Sobic002G230800--Sobic010G105400 Sobic006G124400 Sobic006G124400 Sobic002G230800--Sobic006G124400 Sobic001G054700 Sobic001G054700 Sobic002G230800--Sobic001G054700 Sobic003G179500 Sobic003G179500 Sobic002G230800--Sobic003G179500 Sobic009G109300 Sobic009G109300 Sobic002G230800--Sobic009G109300 Sobic007G218100 Sobic007G218100 Sobic002G230800--Sobic007G218100 Sobic002G230800--Sobic002G246900 Sobic002G230800--Sobic003G244000
Octagon: transcription factors


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