Gene annotation
Transcriptome id Sobic.009G242800.1
Synonym Sb09g029440
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)" (PubMedID : 27586543)
protein kinase domain containing protein, expressed
UniProt C5YW43
Pfam PF07714
Panther DB PTHR23257 PTHR23257:SF512
NCBI CDD KOG0192; Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT3G01490 : Protein kinase superfamily protein
RAP-DB (Rice) LOC_Os05g50190.1 : protein kinase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a036686 , Zm00025a038671 , Zm00025a028282
Brachypodium KQK04729 , KQK08923 , PNT72468 , PNT72467
Barley HORVU1Hr1G091230.2 , HORVU1Hr1G091230.3 , HORVU1Hr1G091230.1 , HORVU1Hr1G091230.6 , HORVU1Hr1G091230.4 , HORVU1Hr1G091230.5 , HORVU1Hr1G091230.8 , HORVU1Hr1G091230.9 , HORVU3Hr1G049370.1 , HORVU3Hr1G049370.2 , HORVU3Hr1G049370.3 , HORVU3Hr1G049370.4 , HORVU3Hr1G049370.5 , HORVU3Hr1G049370.6 , HORVU1Hr1G091230.10 , HORVU1Hr1G091230.11 , HORVU1Hr1G091230.12 , HORVU3Hr1G057440.1 , HORVU3Hr1G057440.3 , HORVU3Hr1G057440.2 , HORVU3Hr1G057440.5 , HORVU3Hr1G057440.4 , HORVU3Hr1G057440.7 , HORVU3Hr1G057440.8 , HORVU3Hr1G049360.5
Wheat TraesCS1D02G423800 , TraesCS1A02G416200 , TraesCS3A02G230500 , TraesCS3B02G259800 , TraesCS3D02G222800 , TraesCS1B02G446500
Populus PNT47876 , PNT47874 , PNT47875 , PNT47870 , PNT47871 , PNT47872


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G218100 expressed protein -
2 Sobic.006G120400 no apical meristem protein, putative, expressed -
3 Sobic.008G101800 expressed protein -
4 Sobic.005G162600 zinc knuckle domain containing protein, expressed -
5 Sobic.002G253500 FAD dependent oxidoreductase domain containing protein, expressed K00306: sarcosine oxidase / L-pipecolate oxidase
6 Sobic.010G218500 bZIP transcription factor domain containing protein, expressed -
7 Sobic.006G203200 Disease resistance/zinc finger/chromosome condensation-like region protein, putative, expressed -
8 Sobic.002G221900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
9 Sobic.001G222300 cyclin-dependent kinase inhibitor, putative, expressed -
10 Sobic.001G439500 acyl CoA binding protein, putative, expressed -
11 Sobic.004G188300 regulation of Al tolerance genes and proton tolerance genes(PubMedID : 29541086)@ZOS2-11 - C2H2 zinc finger protein, expressed -
12 Sobic.005G117901 - -
13 Sobic.002G001600 MBTB12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
14 Sobic.005G181000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Acyl-CoA oxidase 2 ACX2 (At)(PubMedID : 27208977)@Acyl-CoA oxidase 2 ACX2 (At)(PubMedID : 27208977)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
15 Sobic.001G243901 - -
16 Sobic.002G039500 expressed protein -
17 Sobic.006G122400 uncharacterized glycosyltransferase, putative, expressed -
18 Sobic.008G101350 - -
19 Sobic.003G121400 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@expressed protein -
20 Sobic.003G117000 late embryogenesis abundant protein, putative, expressed -


Gene co-expression network
sample Sobic009G242800 Sobic009G242800 Sobic010G218100 Sobic010G218100 Sobic009G242800--Sobic010G218100 Sobic006G120400 Sobic006G120400 Sobic009G242800--Sobic006G120400 Sobic008G101800 Sobic008G101800 Sobic009G242800--Sobic008G101800 Sobic005G162600 Sobic005G162600 Sobic009G242800--Sobic005G162600 Sobic002G253500 Sobic002G253500 Sobic009G242800--Sobic002G253500 Sobic010G218500 Sobic010G218500 Sobic009G242800--Sobic010G218500 Sobic006G203200 Sobic006G203200 Sobic009G242800--Sobic006G203200 Sobic002G221900 Sobic002G221900 Sobic009G242800--Sobic002G221900 Sobic001G222300 Sobic001G222300 Sobic009G242800--Sobic001G222300 Sobic010G218100--Sobic010G218500 Sobic003G117000 Sobic003G117000 Sobic010G218100--Sobic003G117000 Sobic006G122400 Sobic006G122400 Sobic010G218100--Sobic006G122400 Sobic004G188300 Sobic004G188300 Sobic010G218100--Sobic004G188300 Sobic007G150200 Sobic007G150200 Sobic010G218100--Sobic007G150200 Sobic010G218100--Sobic001G222300 Sobic002G039500 Sobic002G039500 Sobic010G218100--Sobic002G039500 Sobic010G218100--Sobic002G253500 Sobic010G218100--Sobic009G242800 Sobic006G120400--Sobic009G242800 Sobic002G341100 Sobic002G341100 Sobic006G120400--Sobic002G341100 Sobic006G120400--Sobic006G203200 Sobic007G155900 Sobic007G155900 Sobic006G120400--Sobic007G155900 Sobic008G015700 Sobic008G015700 Sobic006G120400--Sobic008G015700 Sobic008G106000 Sobic008G106000 Sobic006G120400--Sobic008G106000 Sobic007G043500 Sobic007G043500 Sobic006G120400--Sobic007G043500 Sobic004G256200 Sobic004G256200 Sobic006G120400--Sobic004G256200 Sobic002G001600 Sobic002G001600 Sobic006G120400--Sobic002G001600 Sobic008G101800--Sobic002G001600 Sobic008G073000 Sobic008G073000 Sobic008G101800--Sobic008G073000 Sobic008G101800--Sobic001G222300 Sobic001G206100 Sobic001G206100 Sobic008G101800--Sobic001G206100 Sobic008G101800--Sobic005G162600 Sobic008G116500 Sobic008G116500 Sobic008G101800--Sobic008G116500 Sobic004G332300 Sobic004G332300 Sobic008G101800--Sobic004G332300 Sobic007G185900 Sobic007G185900 Sobic008G101800--Sobic007G185900 Sobic002G045400 Sobic002G045400 Sobic008G101800--Sobic002G045400 Sobic005G162600--Sobic001G222300 Sobic005G162600--Sobic008G116500 Sobic005G162600--Sobic008G101800 Sobic001G439500 Sobic001G439500 Sobic005G162600--Sobic001G439500 Sobic003G093600 Sobic003G093600 Sobic005G162600--Sobic003G093600 Sobic007G008800 Sobic007G008800 Sobic005G162600--Sobic007G008800 Sobic006G129700 Sobic006G129700 Sobic005G162600--Sobic006G129700 Sobic007G037100 Sobic007G037100 Sobic005G162600--Sobic007G037100 Sobic003G204000 Sobic003G204000 Sobic005G162600--Sobic003G204000 Sobic010G248200 Sobic010G248200 Sobic002G253500--Sobic010G248200 Sobic002G108800 Sobic002G108800 Sobic002G253500--Sobic002G108800 Sobic007G156500 Sobic007G156500 Sobic002G253500--Sobic007G156500 Sobic002G253500--Sobic002G039500 Sobic001G345333 Sobic001G345333 Sobic002G253500--Sobic001G345333 Sobic002G007250 Sobic002G007250 Sobic002G253500--Sobic002G007250 Sobic004G212800 Sobic004G212800 Sobic002G253500--Sobic004G212800 Sobic002G253500--Sobic010G218500 Sobic008G161401 Sobic008G161401 Sobic002G253500--Sobic008G161401 Sobic010G218500--Sobic010G248200 Sobic001G243901 Sobic001G243901 Sobic010G218500--Sobic001G243901 Sobic005G117901 Sobic005G117901 Sobic010G218500--Sobic005G117901 Sobic010G218500--Sobic002G253500 Sobic008G101350 Sobic008G101350 Sobic010G218500--Sobic008G101350 Sobic004G096200 Sobic004G096200 Sobic010G218500--Sobic004G096200 Sobic007G211000 Sobic007G211000 Sobic010G218500--Sobic007G211000 Sobic010G218500--Sobic002G108800 Sobic010G218500--Sobic001G345333 Sobic002G016900 Sobic002G016900 Sobic006G203200--Sobic002G016900 Sobic003G244700 Sobic003G244700 Sobic006G203200--Sobic003G244700 Sobic002G253600 Sobic002G253600 Sobic006G203200--Sobic002G253600 Sobic006G203200--Sobic006G120400 Sobic006G203200--Sobic002G341100 Sobic001G130700 Sobic001G130700 Sobic006G203200--Sobic001G130700 Sobic008G156200 Sobic008G156200 Sobic006G203200--Sobic008G156200 Sobic006G203200--Sobic009G242800 Sobic002G002500 Sobic002G002500 Sobic006G203200--Sobic002G002500 Sobic007G023700 Sobic007G023700 Sobic002G221900--Sobic007G023700 Sobic002G221900--Sobic002G108800 Sobic002G221900--Sobic007G156500 Sobic003G044900 Sobic003G044900 Sobic002G221900--Sobic003G044900 Sobic002G221900--Sobic002G253500 Sobic001G024200 Sobic001G024200 Sobic002G221900--Sobic001G024200 Sobic002G221900--Sobic002G039500 Sobic004G143700 Sobic004G143700 Sobic002G221900--Sobic004G143700 Sobic002G221900--Sobic003G204000 Sobic001G222300--Sobic007G037100 Sobic001G222300--Sobic005G162600 Sobic001G222300--Sobic008G101800 Sobic001G222300--Sobic007G211000 Sobic001G222300--Sobic004G188300 Sobic001G222300--Sobic002G001600 Sobic001G451000 Sobic001G451000 Sobic001G222300--Sobic001G451000 Sobic001G222300--Sobic008G116500 Sobic002G284200 Sobic002G284200 Sobic001G222300--Sobic002G284200
Octagon: transcription factors


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