Gene annotation
Transcriptome id Sobic.010G005000.1
Synonym Sb10g000660
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
polygalacturonase, putative, expressed
UniProt C5Z263
Pfam PF12708
Panther DB PTHR31339 PTHR31339:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G61490 : Pectin lyase-like superfamily protein
RAP-DB (Rice) LOC_Os03g03350.1 : polygalacturonase, putative, expressed
MaizeGDB (Corn) Zm00025a000331 , Zm00025a038552 , Zm00025a045501 , Zm00025a041169
Brachypodium KQK23903 , KQK20036 , KQK20035
Barley HORVU7Hr1G002110.8 , HORVU7Hr1G002110.5 , HORVU7Hr1G002110.4 , HORVU7Hr1G002110.6 , HORVU4Hr1G084400.2 , HORVU4Hr1G084400.1 , HORVU4Hr1G084400.6 , HORVU4Hr1G084400.4
Wheat TraesCS4B02G344700 , TraesCS4B02G344700 , TraesCS5A02G513600 , TraesCSU02G066000 , TraesCS7A02G019400 , TraesCS7D02G016300 , TraesCS7D02G016300
Populus -


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cDNA sequences
Sobic.010G005000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G201100 cytochrome b561, putative, expressed K08360: cytochrome b-561
2 Sobic.007G009100 dehydrogenase, putative, expressed -
3 Sobic.004G166500 N-carbamoylputrescine amidohydrolase(PubMedID : 27325899)@Up-regulated by silicon application under drought stress(PubMedID : 24813726)@N-carbamoylputrescine amidase, putative, expressed K12251: N-carbamoylputrescine amidase
4 Sobic.005G080900 expressed protein -
5 Sobic.006G142332 - -
6 Sobic.010G265900 novel plant SNARE 11, putative, expressed K08494: novel plant SNARE
7 Sobic.001G295800 expressed protein -
8 Sobic.004G069200 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
9 Sobic.002G247600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Os9bglu30 - beta-glucosidase, similar to Os4bglu12 exoglucanase, expressed K01188: beta-glucosidase
10 Sobic.003G109600 40S ribosomal protein S5, putative, expressed K02989: RP-S5e, small subunit ribosomal protein S5e
11 Sobic.001G013800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Ser/Thr protein phosphatase family protein, expressed -
12 Sobic.005G043000 heat shock protein-related, putative, expressed -
13 Sobic.003G088400 Up-reguralion under drought(PubMedID : 24916767)@BBTI11 - Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed -
14 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
15 Sobic.004G064900 gp176, putative, expressed -
16 Sobic.001G462700 expressed protein -
17 Sobic.006G125100 ubiquitin family protein, putative, expressed -
18 Sobic.006G260300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@oryzain beta chain precursor, putative, expressed -
19 Sobic.001G161000 AGG2, putative, expressed -
20 Sobic.001G505500 ankyrin repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic010G005000 Sobic010G005000 Sobic001G201100 Sobic001G201100 Sobic010G005000--Sobic001G201100 Sobic007G009100 Sobic007G009100 Sobic010G005000--Sobic007G009100 Sobic004G166500 Sobic004G166500 Sobic010G005000--Sobic004G166500 Sobic005G080900 Sobic005G080900 Sobic010G005000--Sobic005G080900 Sobic006G142332 Sobic006G142332 Sobic010G005000--Sobic006G142332 Sobic010G265900 Sobic010G265900 Sobic010G005000--Sobic010G265900 Sobic001G295800 Sobic001G295800 Sobic010G005000--Sobic001G295800 Sobic004G069200 Sobic004G069200 Sobic010G005000--Sobic004G069200 Sobic002G247600 Sobic002G247600 Sobic010G005000--Sobic002G247600 Sobic003G233500 Sobic003G233500 Sobic001G201100--Sobic003G233500 Sobic001G201100--Sobic004G166500 Sobic001G505500 Sobic001G505500 Sobic001G201100--Sobic001G505500 Sobic010G106200 Sobic010G106200 Sobic001G201100--Sobic010G106200 Sobic001G340500 Sobic001G340500 Sobic001G201100--Sobic001G340500 Sobic006G137100 Sobic006G137100 Sobic001G201100--Sobic006G137100 Sobic010G266300 Sobic010G266300 Sobic001G201100--Sobic010G266300 Sobic007G078100 Sobic007G078100 Sobic001G201100--Sobic007G078100 Sobic010G153100 Sobic010G153100 Sobic001G201100--Sobic010G153100 Sobic007G009100--Sobic007G078100 Sobic007G009100--Sobic001G201100 Sobic010G080500 Sobic010G080500 Sobic007G009100--Sobic010G080500 Sobic004G276100 Sobic004G276100 Sobic007G009100--Sobic004G276100 Sobic001G010400 Sobic001G010400 Sobic007G009100--Sobic001G010400 Sobic007G009100--Sobic004G166500 Sobic002G231600 Sobic002G231600 Sobic007G009100--Sobic002G231600 Sobic010G072300 Sobic010G072300 Sobic007G009100--Sobic010G072300 Sobic007G009100--Sobic004G069200 Sobic003G358300 Sobic003G358300 Sobic004G166500--Sobic003G358300 Sobic004G166500--Sobic001G201100 Sobic001G066700 Sobic001G066700 Sobic004G166500--Sobic001G066700 Sobic003G368700 Sobic003G368700 Sobic004G166500--Sobic003G368700 Sobic008G130400 Sobic008G130400 Sobic004G166500--Sobic008G130400 Sobic002G218000 Sobic002G218000 Sobic004G166500--Sobic002G218000 Sobic006G239300 Sobic006G239300 Sobic004G166500--Sobic006G239300 Sobic004G166500--Sobic001G505500 Sobic009G070200 Sobic009G070200 Sobic004G166500--Sobic009G070200 Sobic003G436700 Sobic003G436700 Sobic005G080900--Sobic003G436700 Sobic003G109600 Sobic003G109600 Sobic005G080900--Sobic003G109600 Sobic004G252100 Sobic004G252100 Sobic005G080900--Sobic004G252100 Sobic002G379500 Sobic002G379500 Sobic005G080900--Sobic002G379500 Sobic006G067800 Sobic006G067800 Sobic005G080900--Sobic006G067800 Sobic009G101700 Sobic009G101700 Sobic005G080900--Sobic009G101700 Sobic006G261900 Sobic006G261900 Sobic005G080900--Sobic006G261900 Sobic001G016500 Sobic001G016500 Sobic005G080900--Sobic001G016500 Sobic002G286900 Sobic002G286900 Sobic005G080900--Sobic002G286900 Sobic006G142332--Sobic004G069200 Sobic001G161000 Sobic001G161000 Sobic006G142332--Sobic001G161000 Sobic003G366600 Sobic003G366600 Sobic006G142332--Sobic003G366600 Sobic004G262200 Sobic004G262200 Sobic006G142332--Sobic004G262200 Sobic006G157900 Sobic006G157900 Sobic006G142332--Sobic006G157900 Sobic004G024100 Sobic004G024100 Sobic006G142332--Sobic004G024100 Sobic006G059700 Sobic006G059700 Sobic006G142332--Sobic006G059700 Sobic006G142332--Sobic002G231600 Sobic001G453900 Sobic001G453900 Sobic006G142332--Sobic001G453900 Sobic006G200000 Sobic006G200000 Sobic010G265900--Sobic006G200000 Sobic005G120500 Sobic005G120500 Sobic010G265900--Sobic005G120500 Sobic006G102900 Sobic006G102900 Sobic010G265900--Sobic006G102900 Sobic010G265900--Sobic005G080900 Sobic003G084300 Sobic003G084300 Sobic010G265900--Sobic003G084300 Sobic009G189200 Sobic009G189200 Sobic010G265900--Sobic009G189200 Sobic006G120700 Sobic006G120700 Sobic010G265900--Sobic006G120700 Sobic001G157800 Sobic001G157800 Sobic010G265900--Sobic001G157800 Sobic004G344500 Sobic004G344500 Sobic010G265900--Sobic004G344500 Sobic005G043000 Sobic005G043000 Sobic001G295800--Sobic005G043000 Sobic001G514200 Sobic001G514200 Sobic001G295800--Sobic001G514200 Sobic001G481000 Sobic001G481000 Sobic001G295800--Sobic001G481000 Sobic003G307400 Sobic003G307400 Sobic001G295800--Sobic003G307400 Sobic001G310300 Sobic001G310300 Sobic001G295800--Sobic001G310300 Sobic009G221800 Sobic009G221800 Sobic001G295800--Sobic009G221800 Sobic009G130300 Sobic009G130300 Sobic001G295800--Sobic009G130300 Sobic003G052900 Sobic003G052900 Sobic001G295800--Sobic003G052900 Sobic009G248100 Sobic009G248100 Sobic001G295800--Sobic009G248100 Sobic001G247600 Sobic001G247600 Sobic004G069200--Sobic001G247600 Sobic003G379800 Sobic003G379800 Sobic004G069200--Sobic003G379800 Sobic004G069200--Sobic006G059700 Sobic004G225900 Sobic004G225900 Sobic004G069200--Sobic004G225900 Sobic001G070800 Sobic001G070800 Sobic004G069200--Sobic001G070800 Sobic006G136800 Sobic006G136800 Sobic004G069200--Sobic006G136800 Sobic002G312900 Sobic002G312900 Sobic004G069200--Sobic002G312900 Sobic001G009500 Sobic001G009500 Sobic004G069200--Sobic001G009500 Sobic010G185000 Sobic010G185000 Sobic004G069200--Sobic010G185000 Sobic001G462700 Sobic001G462700 Sobic002G247600--Sobic001G462700 Sobic002G247600--Sobic010G185000 Sobic009G003600 Sobic009G003600 Sobic002G247600--Sobic009G003600 Sobic004G348400 Sobic004G348400 Sobic002G247600--Sobic004G348400 Sobic001G331200 Sobic001G331200 Sobic002G247600--Sobic001G331200 Sobic001G333400 Sobic001G333400 Sobic002G247600--Sobic001G333400 Sobic007G151300 Sobic007G151300 Sobic002G247600--Sobic007G151300 Sobic005G206601 Sobic005G206601 Sobic002G247600--Sobic005G206601 Sobic003G117600 Sobic003G117600 Sobic002G247600--Sobic003G117600
Octagon: transcription factors


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