Gene annotation
Transcriptome id Sobic.010G021800.1
Synonym Sb10g002070, ADC;Arginine decarboxylase, ADC2, SPE2, ATADC2, ADC, ADC;Arginine decarboxylase
Functional annotation Arginine decarboxylase (PubMedID : 27325899)
Up-regulated by silicon application under drought stress (PubMedID : 24813726)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pyridoxal-dependent decarboxylase protein, putative, expressed
UniProt C5Z3B3
Pfam PF00278 PF02784
Panther DB PTHR11482 PTHR11482:SF36
NCBI CDD -
KEGG Orthology K01583; arginine decarboxylase
Gene Ontology GO:0003824; catalytic activity GO:0008792arginine decarboxylase activity GO:0008295spermidine biosynthetic process GO:0006527arginine catabolic process


Orthologs (automatic annotation)
TAIR AT4G34710 : arginine decarboxylase 2
RAP-DB (Rice) LOC_Os06g04070.1 : pyridoxal-dependent decarboxylase protein, putative, expressed
MaizeGDB (Corn) Zm00025a050167
Brachypodium KQK19731
Barley HORVU7Hr1G012560.1 , HORVU7Hr1G012530.6 , HORVU7Hr1G012530.7 , HORVU7Hr1G012530.4 , HORVU7Hr1G012530.5 , HORVU7Hr1G012530.2 , HORVU7Hr1G012530.3 , HORVU7Hr1G012530.8 , HORVU7Hr1G012530.9
Wheat TraesCS7D02G063900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G021800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G335000 UPF0041 domain containing protein, putative, expressed -
2 Sobic.004G130932 - -
3 Sobic.002G401900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.009G140800 DUF647 domain containing protein, putative, expressed -
5 Sobic.008G068200 amino acid transporter, putative, expressed -
6 Sobic.007G160200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@mitochondrial carrier protein, putative, expressed K15104: SLC25A11, solute carrier family 25 (mitochondrial oxoglutarate transporter), member 11
7 Sobic.003G402000 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
8 Sobic.001G325700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@GCN5-related N-acetyltransferase, putative, expressed K14682: amino-acid N-acetyltransferase
9 Sobic.003G395900 transmembrane amino acid transporter protein, putative, expressed -
10 Sobic.003G403300 Sucrose phosphate synthase genes(PubMedID : 24456189)@"sucrose-phosphate synthase, predicted target of miR6223 or sbi-miR6223-3p expressed in the stems of sweet sorghum"(PubMedID : 26117170)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
11 Sobic.002G247000 expressed protein -
12 Sobic.003G391600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AMP-binding domain containing protein, expressed -
13 Sobic.005G089600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Sucrose phosphate synthase genes(PubMedID : 24456189)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
14 Sobic.001G463200 BTBN5 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
15 Sobic.005G110502 - -
16 Sobic.003G431900 -(PubMedID : 26976818)@expressed protein K07562: nonsense-mediated mRNA decay protein 3
17 Sobic.003G372400 amidophosphoribosyltransferase, chloroplast precursor, putative, expressed K00764: purF, amidophosphoribosyltransferase
18 Sobic.005G231500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AAA-type ATPase family protein, putative, expressed -
19 Sobic.004G255600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@neutral/alkaline invertase, putative, expressed -
20 Sobic.008G053200 fructose-bisphosphate aldolase 2(PubMedID : 26465154)@fructose-bisphosphate aldolase 2("PubMedID : 26759170,PubMedID : 24597475")@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I


Gene co-expression network
sample Sobic010G021800 Sobic010G021800 Sobic002G335000 Sobic002G335000 Sobic010G021800--Sobic002G335000 Sobic004G130932 Sobic004G130932 Sobic010G021800--Sobic004G130932 Sobic002G401900 Sobic002G401900 Sobic010G021800--Sobic002G401900 Sobic009G140800 Sobic009G140800 Sobic010G021800--Sobic009G140800 Sobic008G068200 Sobic008G068200 Sobic010G021800--Sobic008G068200 Sobic007G160200 Sobic007G160200 Sobic010G021800--Sobic007G160200 Sobic003G402000 Sobic003G402000 Sobic010G021800--Sobic003G402000 Sobic001G325700 Sobic001G325700 Sobic010G021800--Sobic001G325700 Sobic003G395900 Sobic003G395900 Sobic010G021800--Sobic003G395900 Sobic004G033700 Sobic004G033700 Sobic002G335000--Sobic004G033700 Sobic003G354600 Sobic003G354600 Sobic002G335000--Sobic003G354600 Sobic010G210500 Sobic010G210500 Sobic002G335000--Sobic010G210500 Sobic001G136800 Sobic001G136800 Sobic002G335000--Sobic001G136800 Sobic003G373500 Sobic003G373500 Sobic002G335000--Sobic003G373500 Sobic006G274800 Sobic006G274800 Sobic002G335000--Sobic006G274800 Sobic004G054100 Sobic004G054100 Sobic002G335000--Sobic004G054100 Sobic002G181600 Sobic002G181600 Sobic002G335000--Sobic002G181600 Sobic002G376600 Sobic002G376600 Sobic002G335000--Sobic002G376600 Sobic004G130932--Sobic002G376600 Sobic002G098900 Sobic002G098900 Sobic004G130932--Sobic002G098900 Sobic004G130932--Sobic003G402000 Sobic006G216100 Sobic006G216100 Sobic004G130932--Sobic006G216100 Sobic007G029700 Sobic007G029700 Sobic004G130932--Sobic007G029700 Sobic002G167500 Sobic002G167500 Sobic004G130932--Sobic002G167500 Sobic003G403300 Sobic003G403300 Sobic004G130932--Sobic003G403300 Sobic004G130932--Sobic002G335000 Sobic006G031800 Sobic006G031800 Sobic004G130932--Sobic006G031800 Sobic003G349200 Sobic003G349200 Sobic002G401900--Sobic003G349200 Sobic008G033200 Sobic008G033200 Sobic002G401900--Sobic008G033200 Sobic003G342100 Sobic003G342100 Sobic002G401900--Sobic003G342100 Sobic001G073900 Sobic001G073900 Sobic002G401900--Sobic001G073900 Sobic003G372400 Sobic003G372400 Sobic002G401900--Sobic003G372400 Sobic003G036200 Sobic003G036200 Sobic002G401900--Sobic003G036200 Sobic002G403600 Sobic002G403600 Sobic002G401900--Sobic002G403600 Sobic005G231500 Sobic005G231500 Sobic002G401900--Sobic005G231500 Sobic006G130000 Sobic006G130000 Sobic002G401900--Sobic006G130000 Sobic003G234200 Sobic003G234200 Sobic009G140800--Sobic003G234200 Sobic001G329400 Sobic001G329400 Sobic009G140800--Sobic001G329400 Sobic004G268000 Sobic004G268000 Sobic009G140800--Sobic004G268000 Sobic004G125700 Sobic004G125700 Sobic009G140800--Sobic004G125700 Sobic004G238600 Sobic004G238600 Sobic009G140800--Sobic004G238600 Sobic005G110502 Sobic005G110502 Sobic009G140800--Sobic005G110502 Sobic003G431900 Sobic003G431900 Sobic009G140800--Sobic003G431900 Sobic009G129300 Sobic009G129300 Sobic009G140800--Sobic009G129300 Sobic007G161500 Sobic007G161500 Sobic009G140800--Sobic007G161500 Sobic001G078400 Sobic001G078400 Sobic008G068200--Sobic001G078400 Sobic001G463200 Sobic001G463200 Sobic008G068200--Sobic001G463200 Sobic008G068200--Sobic005G110502 Sobic006G069300 Sobic006G069300 Sobic008G068200--Sobic006G069300 Sobic008G066100 Sobic008G066100 Sobic008G068200--Sobic008G066100 Sobic006G051300 Sobic006G051300 Sobic008G068200--Sobic006G051300 Sobic004G026700 Sobic004G026700 Sobic008G068200--Sobic004G026700 Sobic008G053200 Sobic008G053200 Sobic008G068200--Sobic008G053200 Sobic004G035601 Sobic004G035601 Sobic008G068200--Sobic004G035601 Sobic007G140900 Sobic007G140900 Sobic007G160200--Sobic007G140900 Sobic004G332100 Sobic004G332100 Sobic007G160200--Sobic004G332100 Sobic001G087700 Sobic001G087700 Sobic007G160200--Sobic001G087700 Sobic009G037800 Sobic009G037800 Sobic007G160200--Sobic009G037800 Sobic001G391300 Sobic001G391300 Sobic007G160200--Sobic001G391300 Sobic002G184600 Sobic002G184600 Sobic007G160200--Sobic002G184600 Sobic001G523200 Sobic001G523200 Sobic007G160200--Sobic001G523200 Sobic003G238000 Sobic003G238000 Sobic007G160200--Sobic003G238000 Sobic009G195800 Sobic009G195800 Sobic007G160200--Sobic009G195800 Sobic001G020100 Sobic001G020100 Sobic003G402000--Sobic001G020100 Sobic003G402000--Sobic004G268000 Sobic008G091400 Sobic008G091400 Sobic003G402000--Sobic008G091400 SobicK031800 SobicK031800 Sobic003G402000--SobicK031800 Sobic003G402000--Sobic009G140800 Sobic009G063100 Sobic009G063100 Sobic003G402000--Sobic009G063100 Sobic008G188600 Sobic008G188600 Sobic003G402000--Sobic008G188600 Sobic007G181400 Sobic007G181400 Sobic003G402000--Sobic007G181400 Sobic007G136200 Sobic007G136200 Sobic003G402000--Sobic007G136200 Sobic008G001900 Sobic008G001900 Sobic001G325700--Sobic008G001900 Sobic001G325700--Sobic007G029700 Sobic004G054400 Sobic004G054400 Sobic001G325700--Sobic004G054400 Sobic001G484400 Sobic001G484400 Sobic001G325700--Sobic001G484400 Sobic007G126400 Sobic007G126400 Sobic001G325700--Sobic007G126400 Sobic008G094000 Sobic008G094000 Sobic001G325700--Sobic008G094000 Sobic009G085500 Sobic009G085500 Sobic001G325700--Sobic009G085500 Sobic006G130800 Sobic006G130800 Sobic001G325700--Sobic006G130800 Sobic003G435800 Sobic003G435800 Sobic001G325700--Sobic003G435800 Sobic003G389700 Sobic003G389700 Sobic003G395900--Sobic003G389700 Sobic004G255600 Sobic004G255600 Sobic003G395900--Sobic004G255600 Sobic006G008700 Sobic006G008700 Sobic003G395900--Sobic006G008700 Sobic003G395900--Sobic009G140800 Sobic006G130300 Sobic006G130300 Sobic003G395900--Sobic006G130300 Sobic001G111700 Sobic001G111700 Sobic003G395900--Sobic001G111700 Sobic004G283100 Sobic004G283100 Sobic003G395900--Sobic004G283100 Sobic002G086800 Sobic002G086800 Sobic003G395900--Sobic002G086800 Sobic003G395900--Sobic001G329400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.