Gene annotation
Transcriptome id Sobic.010G032800.1
Synonym Sb10g002956
Functional annotation expressed protein
UniProt A0A1W0VRC4
Pfam PF12274
Panther DB PTHR33120 PTHR33120:SF11
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G32530 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os07g09850.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G182300 - -
2 Sobic.008G003600 PMR5, putative, expressed -
3 Sobic.003G414600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@thiamin pyrophosphokinase 1, putative, expressed K00949: thiN, TPK1, thiamine pyrophosphokinase
4 Sobic.010G008100 RNA recognition motif containing protein, putative, expressed -
5 Sobic.003G019700 GDSL-like lipase/acylhydrolase, putative, expressed -
6 Sobic.003G040600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
7 Sobic.002G301300 SNF7 domain containing protein, putative, expressed K12193: VPS24, charged multivesicular body protein 3
8 Sobic.002G131900 expressed protein -
9 Sobic.004G069500 expressed protein -
10 Sobic.010G236500 LTPL85 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
11 Sobic.001G282000 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
12 Sobic.001G505500 ankyrin repeat domain containing protein, expressed -
13 Sobic.005G017300 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
14 Sobic.002G362900 IBS1, putative, expressed -
15 Sobic.001G098500 CBS domain containing membrane protein, putative, expressed -
16 Sobic.004G159100 exostosin family domain containing protein, expressed -
17 Sobic.002G361700 expressed protein -
18 Sobic.001G157800 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
19 Sobic.004G222600 expressed protein -
20 Sobic.007G225300 2-nitropropane dioxygenase family, putative, expressed -


Gene co-expression network
sample Sobic010G032800 Sobic010G032800 Sobic009G182300 Sobic009G182300 Sobic010G032800--Sobic009G182300 Sobic008G003600 Sobic008G003600 Sobic010G032800--Sobic008G003600 Sobic003G414600 Sobic003G414600 Sobic010G032800--Sobic003G414600 Sobic010G008100 Sobic010G008100 Sobic010G032800--Sobic010G008100 Sobic003G019700 Sobic003G019700 Sobic010G032800--Sobic003G019700 Sobic003G040600 Sobic003G040600 Sobic010G032800--Sobic003G040600 Sobic002G301300 Sobic002G301300 Sobic010G032800--Sobic002G301300 Sobic002G131900 Sobic002G131900 Sobic010G032800--Sobic002G131900 Sobic004G069500 Sobic004G069500 Sobic010G032800--Sobic004G069500 Sobic001G007600 Sobic001G007600 Sobic009G182300--Sobic001G007600 Sobic004G138800 Sobic004G138800 Sobic009G182300--Sobic004G138800 Sobic001G505500 Sobic001G505500 Sobic009G182300--Sobic001G505500 Sobic001G418900 Sobic001G418900 Sobic009G182300--Sobic001G418900 Sobic003G443300 Sobic003G443300 Sobic009G182300--Sobic003G443300 Sobic005G017300 Sobic005G017300 Sobic009G182300--Sobic005G017300 Sobic010G210000 Sobic010G210000 Sobic009G182300--Sobic010G210000 Sobic004G344500 Sobic004G344500 Sobic009G182300--Sobic004G344500 Sobic003G127700 Sobic003G127700 Sobic009G182300--Sobic003G127700 Sobic003G052400 Sobic003G052400 Sobic008G003600--Sobic003G052400 Sobic009G229300 Sobic009G229300 Sobic008G003600--Sobic009G229300 Sobic001G145500 Sobic001G145500 Sobic008G003600--Sobic001G145500 Sobic008G003600--Sobic010G008100 Sobic006G034800 Sobic006G034800 Sobic008G003600--Sobic006G034800 Sobic002G342500 Sobic002G342500 Sobic008G003600--Sobic002G342500 Sobic001G408100 Sobic001G408100 Sobic008G003600--Sobic001G408100 Sobic003G030800 Sobic003G030800 Sobic008G003600--Sobic003G030800 Sobic009G168000 Sobic009G168000 Sobic008G003600--Sobic009G168000 Sobic009G213600 Sobic009G213600 Sobic003G414600--Sobic009G213600 Sobic004G222600 Sobic004G222600 Sobic003G414600--Sobic004G222600 Sobic007G150000 Sobic007G150000 Sobic003G414600--Sobic007G150000 Sobic001G230900 Sobic001G230900 Sobic003G414600--Sobic001G230900 Sobic009G213700 Sobic009G213700 Sobic003G414600--Sobic009G213700 Sobic007G092100 Sobic007G092100 Sobic003G414600--Sobic007G092100 Sobic010G238700 Sobic010G238700 Sobic003G414600--Sobic010G238700 Sobic003G217100 Sobic003G217100 Sobic003G414600--Sobic003G217100 Sobic002G020900 Sobic002G020900 Sobic003G414600--Sobic002G020900 Sobic001G403700 Sobic001G403700 Sobic010G008100--Sobic001G403700 Sobic009G008600 Sobic009G008600 Sobic010G008100--Sobic009G008600 Sobic008G132800 Sobic008G132800 Sobic010G008100--Sobic008G132800 Sobic009G104000 Sobic009G104000 Sobic010G008100--Sobic009G104000 Sobic003G424800 Sobic003G424800 Sobic010G008100--Sobic003G424800 Sobic010G213400 Sobic010G213400 Sobic010G008100--Sobic010G213400 Sobic002G078400 Sobic002G078400 Sobic010G008100--Sobic002G078400 Sobic001G331900 Sobic001G331900 Sobic010G008100--Sobic001G331900 Sobic005G157200 Sobic005G157200 Sobic010G008100--Sobic005G157200 Sobic003G019800 Sobic003G019800 Sobic003G019700--Sobic003G019800 Sobic003G016600 Sobic003G016600 Sobic003G019700--Sobic003G016600 Sobic005G092000 Sobic005G092000 Sobic003G019700--Sobic005G092000 Sobic005G110490 Sobic005G110490 Sobic003G019700--Sobic005G110490 Sobic009G257700 Sobic009G257700 Sobic003G019700--Sobic009G257700 Sobic010G035900 Sobic010G035900 Sobic003G019700--Sobic010G035900 Sobic006G076201 Sobic006G076201 Sobic003G019700--Sobic006G076201 Sobic002G372800 Sobic002G372800 Sobic003G019700--Sobic002G372800 Sobic010G069900 Sobic010G069900 Sobic003G019700--Sobic010G069900 Sobic009G073800 Sobic009G073800 Sobic003G040600--Sobic009G073800 Sobic006G183900 Sobic006G183900 Sobic003G040600--Sobic006G183900 Sobic003G083200 Sobic003G083200 Sobic003G040600--Sobic003G083200 Sobic006G282300 Sobic006G282300 Sobic003G040600--Sobic006G282300 Sobic008G034700 Sobic008G034700 Sobic003G040600--Sobic008G034700 Sobic002G318200 Sobic002G318200 Sobic003G040600--Sobic002G318200 Sobic001G212451 Sobic001G212451 Sobic003G040600--Sobic001G212451 Sobic004G248500 Sobic004G248500 Sobic003G040600--Sobic004G248500 Sobic003G415400 Sobic003G415400 Sobic003G040600--Sobic003G415400 Sobic006G257001 Sobic006G257001 Sobic002G301300--Sobic006G257001 Sobic002G301300--Sobic002G131900 Sobic004G253900 Sobic004G253900 Sobic002G301300--Sobic004G253900 Sobic001G206900 Sobic001G206900 Sobic002G301300--Sobic001G206900 Sobic010G188100 Sobic010G188100 Sobic002G301300--Sobic010G188100 Sobic004G274400 Sobic004G274400 Sobic002G301300--Sobic004G274400 Sobic001G283500 Sobic001G283500 Sobic002G301300--Sobic001G283500 Sobic010G026700 Sobic010G026700 Sobic002G301300--Sobic010G026700 Sobic002G301300--Sobic003G052400 Sobic002G131900--Sobic006G257001 Sobic003G400100 Sobic003G400100 Sobic002G131900--Sobic003G400100 Sobic002G131900--Sobic004G274400 Sobic001G237500 Sobic001G237500 Sobic002G131900--Sobic001G237500 Sobic010G105600 Sobic010G105600 Sobic002G131900--Sobic010G105600 Sobic001G067900 Sobic001G067900 Sobic002G131900--Sobic001G067900 Sobic002G131900--Sobic006G034800 Sobic002G131900--Sobic003G052400 Sobic004G072800 Sobic004G072800 Sobic002G131900--Sobic004G072800 Sobic004G069500--Sobic003G424800 Sobic004G130200 Sobic004G130200 Sobic004G069500--Sobic004G130200 Sobic002G392800 Sobic002G392800 Sobic004G069500--Sobic002G392800 Sobic004G310900 Sobic004G310900 Sobic004G069500--Sobic004G310900 Sobic004G352200 Sobic004G352200 Sobic004G069500--Sobic004G352200 Sobic003G160900 Sobic003G160900 Sobic004G069500--Sobic003G160900 Sobic003G130600 Sobic003G130600 Sobic004G069500--Sobic003G130600 Sobic001G117400 Sobic001G117400 Sobic004G069500--Sobic001G117400 Sobic009G211700 Sobic009G211700 Sobic004G069500--Sobic009G211700
Octagon: transcription factors


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