Gene annotation
Transcriptome id Sobic.010G125200.1,Sobic.010G125200.2
Synonym Sb10g011050
Functional annotation expressed protein
UniProt C5Z943 , A0A1W0VSQ1
Pfam PF09184
Panther DB PTHR16487
NCBI CDD -
KEGG Orthology K15425; serine/threonine-protein phosphatase 4 regulatory subunit 2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G17070 : -
RAP-DB (Rice) LOC_Os06g19650.1 : expressed protein
MaizeGDB (Corn) Zm00025a050554
Brachypodium KQK18531
Barley HORVU7Hr1G045230.9 , HORVU7Hr1G045230.8 , HORVU7Hr1G045230.1 , HORVU7Hr1G045230.3 , HORVU7Hr1G045230.2 , HORVU7Hr1G045230.5 , HORVU7Hr1G045230.7 , HORVU7Hr1G045230.6
Wheat TraesCS7B02G126900 , TraesCS7D02G221600 , TraesCS7A02G220500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G125200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G151200 expressed protein -
2 Sobic.002G299100 SET domain containing protein, expressed -
3 Sobic.008G089700 expressed protein K11364: SAGA-associated factor 29
4 Sobic.005G133500 expressed protein -
5 Sobic.004G007300 expressed protein -
6 Sobic.002G111600 expressed protein -
7 Sobic.004G061900 Sad1 / UNC-like C-terminal domain containing protein, putative, expressed K19347: SUN domain-containing protein 1/2
8 Sobic.001G335900 vacuolar protein sorting-associated protein 52, putative, expressed -
9 Sobic.003G115100 importin subunit alpha, putative, expressed -
10 Sobic.006G092800 proteasome subunit, putative, expressed K03036: PSMD11, 26S proteasome regulatory subunit N6
11 Sobic.004G013600 autophagy protein 5, putative, expressed K08339: autophagy-related protein 5
12 Sobic.001G142100 WD domain, G-beta repeat domain containing protein, expressed K04536: guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
13 Sobic.001G226000 WD domain, G-beta repeat domain containing protein, expressed K10599: PRPF19, pre-mRNA-processing factor 19
14 Sobic.005G178950 - -
15 Sobic.002G378200 adaptor complexes medium subunit family domain containing protein, expressed K12402: AP-4 complex subunit mu-1
16 Sobic.004G026100 tRNA methyltransferase, putative, expressed K03439: trmB, METTL1, tRNA (guanine-N7-)-methyltransferase
17 Sobic.002G197100 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
18 Sobic.001G056200 expressed protein -
19 Sobic.001G408700 kinesin like protein, putative, expressed K18182: cytochrome c oxidase assembly protein subunit 16
20 Sobic.004G345700 TBC domain containing protein, expressed -


Gene co-expression network
sample Sobic010G125200 Sobic010G125200 Sobic009G151200 Sobic009G151200 Sobic010G125200--Sobic009G151200 Sobic002G299100 Sobic002G299100 Sobic010G125200--Sobic002G299100 Sobic008G089700 Sobic008G089700 Sobic010G125200--Sobic008G089700 Sobic005G133500 Sobic005G133500 Sobic010G125200--Sobic005G133500 Sobic004G007300 Sobic004G007300 Sobic010G125200--Sobic004G007300 Sobic002G111600 Sobic002G111600 Sobic010G125200--Sobic002G111600 Sobic004G061900 Sobic004G061900 Sobic010G125200--Sobic004G061900 Sobic001G335900 Sobic001G335900 Sobic010G125200--Sobic001G335900 Sobic003G115100 Sobic003G115100 Sobic010G125200--Sobic003G115100 Sobic006G248500 Sobic006G248500 Sobic009G151200--Sobic006G248500 Sobic002G259800 Sobic002G259800 Sobic009G151200--Sobic002G259800 Sobic009G151200--Sobic005G133500 Sobic004G285000 Sobic004G285000 Sobic009G151200--Sobic004G285000 Sobic001G424600 Sobic001G424600 Sobic009G151200--Sobic001G424600 Sobic004G085300 Sobic004G085300 Sobic009G151200--Sobic004G085300 Sobic008G100100 Sobic008G100100 Sobic009G151200--Sobic008G100100 Sobic004G086200 Sobic004G086200 Sobic009G151200--Sobic004G086200 Sobic004G156500 Sobic004G156500 Sobic009G151200--Sobic004G156500 Sobic009G137100 Sobic009G137100 Sobic002G299100--Sobic009G137100 Sobic002G197100 Sobic002G197100 Sobic002G299100--Sobic002G197100 Sobic002G370900 Sobic002G370900 Sobic002G299100--Sobic002G370900 Sobic004G246100 Sobic004G246100 Sobic002G299100--Sobic004G246100 Sobic001G176200 Sobic001G176200 Sobic002G299100--Sobic001G176200 Sobic009G040800 Sobic009G040800 Sobic002G299100--Sobic009G040800 Sobic006G082900 Sobic006G082900 Sobic002G299100--Sobic006G082900 Sobic005G154500 Sobic005G154500 Sobic002G299100--Sobic005G154500 Sobic009G199500 Sobic009G199500 Sobic002G299100--Sobic009G199500 Sobic006G278700 Sobic006G278700 Sobic008G089700--Sobic006G278700 Sobic002G378200 Sobic002G378200 Sobic008G089700--Sobic002G378200 Sobic007G184500 Sobic007G184500 Sobic008G089700--Sobic007G184500 Sobic009G226400 Sobic009G226400 Sobic008G089700--Sobic009G226400 Sobic001G142100 Sobic001G142100 Sobic008G089700--Sobic001G142100 Sobic004G350100 Sobic004G350100 Sobic008G089700--Sobic004G350100 Sobic004G283000 Sobic004G283000 Sobic008G089700--Sobic004G283000 Sobic006G252700 Sobic006G252700 Sobic008G089700--Sobic006G252700 Sobic002G300700 Sobic002G300700 Sobic008G089700--Sobic002G300700 Sobic005G133500--Sobic009G151200 Sobic002G423200 Sobic002G423200 Sobic005G133500--Sobic002G423200 Sobic003G267800 Sobic003G267800 Sobic005G133500--Sobic003G267800 Sobic005G133500--Sobic002G259800 Sobic006G217200 Sobic006G217200 Sobic005G133500--Sobic006G217200 Sobic008G131000 Sobic008G131000 Sobic005G133500--Sobic008G131000 Sobic005G133500--Sobic004G246100 Sobic010G236400 Sobic010G236400 Sobic005G133500--Sobic010G236400 Sobic001G080900 Sobic001G080900 Sobic005G133500--Sobic001G080900 Sobic004G007300--Sobic002G197100 Sobic001G408700 Sobic001G408700 Sobic004G007300--Sobic001G408700 Sobic004G345700 Sobic004G345700 Sobic004G007300--Sobic004G345700 Sobic006G092800 Sobic006G092800 Sobic004G007300--Sobic006G092800 Sobic004G007300--Sobic004G350100 Sobic006G173100 Sobic006G173100 Sobic004G007300--Sobic006G173100 Sobic004G007300--Sobic004G283000 Sobic008G129100 Sobic008G129100 Sobic004G007300--Sobic008G129100 Sobic001G056200 Sobic001G056200 Sobic004G007300--Sobic001G056200 Sobic001G382600 Sobic001G382600 Sobic002G111600--Sobic001G382600 Sobic007G132100 Sobic007G132100 Sobic002G111600--Sobic007G132100 Sobic007G225100 Sobic007G225100 Sobic002G111600--Sobic007G225100 Sobic008G103300 Sobic008G103300 Sobic002G111600--Sobic008G103300 Sobic002G111600--Sobic001G142100 Sobic008G164600 Sobic008G164600 Sobic002G111600--Sobic008G164600 Sobic006G240100 Sobic006G240100 Sobic002G111600--Sobic006G240100 Sobic009G088000 Sobic009G088000 Sobic002G111600--Sobic009G088000 Sobic010G118000 Sobic010G118000 Sobic002G111600--Sobic010G118000 Sobic007G191100 Sobic007G191100 Sobic004G061900--Sobic007G191100 Sobic008G129700 Sobic008G129700 Sobic004G061900--Sobic008G129700 Sobic006G129700 Sobic006G129700 Sobic004G061900--Sobic006G129700 Sobic008G117200 Sobic008G117200 Sobic004G061900--Sobic008G117200 Sobic009G030300 Sobic009G030300 Sobic004G061900--Sobic009G030300 Sobic004G061900--Sobic004G345700 Sobic002G177400 Sobic002G177400 Sobic004G061900--Sobic002G177400 Sobic001G094000 Sobic001G094000 Sobic004G061900--Sobic001G094000 Sobic004G027100 Sobic004G027100 Sobic004G061900--Sobic004G027100 Sobic001G369000 Sobic001G369000 Sobic001G335900--Sobic001G369000 Sobic006G138000 Sobic006G138000 Sobic001G335900--Sobic006G138000 Sobic001G518400 Sobic001G518400 Sobic001G335900--Sobic001G518400 Sobic001G170100 Sobic001G170100 Sobic001G335900--Sobic001G170100 Sobic003G240700 Sobic003G240700 Sobic001G335900--Sobic003G240700 Sobic009G229600 Sobic009G229600 Sobic001G335900--Sobic009G229600 Sobic009G049400 Sobic009G049400 Sobic001G335900--Sobic009G049400 Sobic007G120500 Sobic007G120500 Sobic001G335900--Sobic007G120500 SobicK004100 SobicK004100 Sobic001G335900--SobicK004100 Sobic001G226000 Sobic001G226000 Sobic003G115100--Sobic001G226000 Sobic003G115100--Sobic009G151200 Sobic001G010600 Sobic001G010600 Sobic003G115100--Sobic001G010600 Sobic003G115100--Sobic009G030300 Sobic007G195400 Sobic007G195400 Sobic003G115100--Sobic007G195400 Sobic004G013600 Sobic004G013600 Sobic003G115100--Sobic004G013600 Sobic005G216300 Sobic005G216300 Sobic003G115100--Sobic005G216300 Sobic002G058300 Sobic002G058300 Sobic003G115100--Sobic002G058300 Sobic004G011000 Sobic004G011000 Sobic003G115100--Sobic004G011000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.