Gene annotation
Transcriptome id Sobic.010G260200.2
Synonym Sb10g029660
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1W0VUZ0
Pfam -
Panther DB PTHR35692 PTHR35692:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G23270 : -
RAP-DB (Rice) LOC_Os06g49680.1 : expressed protein
MaizeGDB (Corn) Zm00025a018448
Brachypodium KQK17506
Barley HORVU7Hr1G095200.1
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.010G260200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G124900 MA3 domain containing protein, expressed -
2 Sobic.010G001600 homogentisate 1,2-dioxygenase, putative, expressed K00451: HGD, homogentisate 1,2-dioxygenase
3 Sobic.007G130600 methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor, putative, expressed K01969: 3-methylcrotonyl-CoA carboxylase beta subunit
4 Sobic.009G135800 CUE domain containing protein, expressed -
5 Sobic.004G012000 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed -
6 Sobic.003G145900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyltransferase, putative, expressed K13510: lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase
7 Sobic.009G121100 expressed protein -
8 Sobic.001G156100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aminotransferase, putative, expressed K00819: rocD, ornithine--oxo-acid transaminase
9 Sobic.005G177800 helix-loop-helix DNA-binding domain containing protein, expressed -
10 Sobic.009G040700 "OsPPKL2(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659919)@serine/threonine protein phosphatase, putative, expressed K01090: protein phosphatase
11 Sobic.008G160700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed K01968: 3-methylcrotonyl-CoA carboxylase alpha subunit
12 Sobic.004G037900 GHMP kinases ATP-binding protein, putative, expressed K12446: L-arabinokinase
13 Sobic.007G041500 diacylglycerol kinase, putative, expressed -
14 Sobic.010G276800 pollen signalling protein with adenylyl cyclase activity, putative, expressed -
15 Sobic.003G239900 ketol-acid reductoisomerase, chloroplast precursor, putative, expressed K00053: ketol-acid reductoisomerase
16 Sobic.004G031700 expressed protein -
17 Sobic.004G282400 rhoGAP domain containing protein, expressed -
18 Sobic.003G336800 expressed protein -
19 Sobic.009G257800 sodium/calcium exchanger protein, putative, expressed K07300: chaA, Ca2+:H+ antiporter
20 Sobic.009G027000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00253: IVD, isovaleryl-CoA dehydrogenase


Gene co-expression network
sample Sobic010G260200 Sobic010G260200 Sobic006G124900 Sobic006G124900 Sobic010G260200--Sobic006G124900 Sobic010G001600 Sobic010G001600 Sobic010G260200--Sobic010G001600 Sobic007G130600 Sobic007G130600 Sobic010G260200--Sobic007G130600 Sobic009G135800 Sobic009G135800 Sobic010G260200--Sobic009G135800 Sobic004G012000 Sobic004G012000 Sobic010G260200--Sobic004G012000 Sobic003G145900 Sobic003G145900 Sobic010G260200--Sobic003G145900 Sobic009G121100 Sobic009G121100 Sobic010G260200--Sobic009G121100 Sobic001G156100 Sobic001G156100 Sobic010G260200--Sobic001G156100 Sobic005G177800 Sobic005G177800 Sobic010G260200--Sobic005G177800 Sobic006G124900--Sobic005G177800 Sobic006G124900--Sobic010G001600 Sobic004G196700 Sobic004G196700 Sobic006G124900--Sobic004G196700 Sobic001G543800 Sobic001G543800 Sobic006G124900--Sobic001G543800 Sobic010G276800 Sobic010G276800 Sobic006G124900--Sobic010G276800 Sobic002G313300 Sobic002G313300 Sobic006G124900--Sobic002G313300 Sobic001G477800 Sobic001G477800 Sobic006G124900--Sobic001G477800 Sobic006G124900--Sobic007G130600 Sobic002G300400 Sobic002G300400 Sobic006G124900--Sobic002G300400 Sobic008G160700 Sobic008G160700 Sobic010G001600--Sobic008G160700 Sobic010G001600--Sobic006G124900 Sobic001G194900 Sobic001G194900 Sobic010G001600--Sobic001G194900 Sobic010G001600--Sobic005G177800 Sobic010G001600--Sobic001G543800 Sobic005G130200 Sobic005G130200 Sobic010G001600--Sobic005G130200 Sobic010G001600--Sobic002G300400 Sobic010G001600--Sobic010G276800 Sobic008G024600 Sobic008G024600 Sobic010G001600--Sobic008G024600 Sobic007G130600--Sobic001G194900 Sobic005G181000 Sobic005G181000 Sobic007G130600--Sobic005G181000 Sobic007G130600--Sobic008G160700 Sobic007G130600--Sobic006G124900 Sobic007G130600--Sobic005G177800 Sobic009G027000 Sobic009G027000 Sobic007G130600--Sobic009G027000 Sobic007G130600--Sobic010G001600 Sobic009G083900 Sobic009G083900 Sobic007G130600--Sobic009G083900 Sobic007G078000 Sobic007G078000 Sobic007G130600--Sobic007G078000 Sobic004G031700 Sobic004G031700 Sobic009G135800--Sobic004G031700 Sobic002G340100 Sobic002G340100 Sobic009G135800--Sobic002G340100 Sobic009G135800--Sobic008G024600 Sobic006G128900 Sobic006G128900 Sobic009G135800--Sobic006G128900 Sobic002G053000 Sobic002G053000 Sobic009G135800--Sobic002G053000 Sobic003G445400 Sobic003G445400 Sobic009G135800--Sobic003G445400 Sobic002G158700 Sobic002G158700 Sobic009G135800--Sobic002G158700 Sobic006G173100 Sobic006G173100 Sobic009G135800--Sobic006G173100 Sobic009G000500 Sobic009G000500 Sobic009G135800--Sobic009G000500 Sobic005G154700 Sobic005G154700 Sobic004G012000--Sobic005G154700 Sobic004G088400 Sobic004G088400 Sobic004G012000--Sobic004G088400 Sobic001G296500 Sobic001G296500 Sobic004G012000--Sobic001G296500 Sobic008G117200 Sobic008G117200 Sobic004G012000--Sobic008G117200 Sobic003G336800 Sobic003G336800 Sobic004G012000--Sobic003G336800 Sobic003G239900 Sobic003G239900 Sobic004G012000--Sobic003G239900 Sobic004G026100 Sobic004G026100 Sobic004G012000--Sobic004G026100 Sobic002G197100 Sobic002G197100 Sobic004G012000--Sobic002G197100 Sobic007G095200 Sobic007G095200 Sobic004G012000--Sobic007G095200 Sobic009G235900 Sobic009G235900 Sobic003G145900--Sobic009G235900 Sobic003G145900--Sobic008G160700 Sobic005G007800 Sobic005G007800 Sobic003G145900--Sobic005G007800 Sobic004G330900 Sobic004G330900 Sobic003G145900--Sobic004G330900 Sobic001G221100 Sobic001G221100 Sobic003G145900--Sobic001G221100 Sobic010G042900 Sobic010G042900 Sobic003G145900--Sobic010G042900 Sobic002G303000 Sobic002G303000 Sobic003G145900--Sobic002G303000 Sobic006G114500 Sobic006G114500 Sobic003G145900--Sobic006G114500 Sobic004G037900 Sobic004G037900 Sobic003G145900--Sobic004G037900 Sobic006G214500 Sobic006G214500 Sobic009G121100--Sobic006G214500 Sobic003G407300 Sobic003G407300 Sobic009G121100--Sobic003G407300 Sobic003G019100 Sobic003G019100 Sobic009G121100--Sobic003G019100 Sobic009G121100--Sobic001G156100 Sobic001G443900 Sobic001G443900 Sobic009G121100--Sobic001G443900 Sobic001G373200 Sobic001G373200 Sobic009G121100--Sobic001G373200 Sobic010G078100 Sobic010G078100 Sobic009G121100--Sobic010G078100 Sobic004G295800 Sobic004G295800 Sobic009G121100--Sobic004G295800 Sobic009G121100--Sobic002G303000 Sobic001G156100--Sobic009G121100 Sobic001G447500 Sobic001G447500 Sobic001G156100--Sobic001G447500 Sobic001G156100--Sobic006G214500 Sobic002G152200 Sobic002G152200 Sobic001G156100--Sobic002G152200 Sobic009G229800 Sobic009G229800 Sobic001G156100--Sobic009G229800 Sobic001G156100--Sobic008G160700 Sobic001G156100--Sobic009G027000 Sobic001G156100--Sobic001G373200 Sobic001G156100--Sobic004G295800 Sobic005G177800--Sobic006G124900 Sobic005G177800--Sobic004G196700 Sobic005G177800--Sobic010G001600 Sobic005G177800--Sobic001G543800 Sobic005G177800--Sobic004G031700 Sobic005G177800--Sobic001G477800 Sobic005G177800--Sobic007G078000 Sobic005G177800--Sobic002G313300 Sobic005G177800--Sobic009G000500
Octagon: transcription factors


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