Gene annotation
Transcriptome id Sobic.001G041000.1
Synonym Sb01g003780
Functional annotation ribosomal protein L36 containing protein, expressed
UniProt C5WVZ6 , A1E9V8
Pfam PF00444
Panther DB PTHR18804 PTHR18804:SF12
NCBI CDD KOG4122; Mitochondrial/chloroplast ribosomal protein L36
KEGG Orthology K02919; RP-L36, MRPL36, large subunit ribosomal protein L36
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT5G20180 : Ribosomal protein L36
RAP-DB (Rice) LOC_Os03g59720.1 : ribosomal protein L36 containing protein, expressed
MaizeGDB (Corn) Zm00025a016470
Brachypodium KQK12521
Barley HORVU5Hr1G111380.1 , HORVU5Hr1G111380.3 , HORVU5Hr1G111380.2
Wheat TraesCS5D02G480100 , TraesCS5A02G467200 , TraesCS5B02G479000
Populus -


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cDNA sequences
Sobic.001G041000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G015000 expressed protein -
2 Sobic.002G253000 no apical meristem protein, putative, expressed -
3 Sobic.004G128000 expressed protein -
4 Sobic.010G057100 expressed protein K02983: RP-S30e, small subunit ribosomal protein S30e
5 Sobic.004G099500 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
6 Sobic.006G244800 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
7 Sobic.007G168400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.003G187100 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
9 Sobic.004G259700 60S ribosomal protein L31, putative, expressed K02910: RP-L31e, large subunit ribosomal protein L31e
10 Sobic.007G172300 fiber protein Fb14, putative, expressed K03938: NADH dehydrogenase (ubiquinone) Fe-S protein 5
11 Sobic.007G200100 KID-containing protein, putative, expressed -
12 Sobic.001G161601 - K14484: auxin-responsive protein IAA
13 Sobic.005G016600 DUF567 domain containing protein, putative, expressed -
14 Sobic.002G318501 - -
15 Sobic.001G149500 dehydrin, putative, expressed -
16 Sobic.003G025000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@carnitine racemase like protein, putative, expressed -
17 Sobic.004G342900 RALFL22 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
18 Sobic.009G221600 zinc finger, C3HC4 type domain containing protein, expressed -
19 Sobic.003G338966 - -
20 Sobic.001G414400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ankyrin repeat-containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G041000 Sobic001G041000 Sobic009G015000 Sobic009G015000 Sobic001G041000--Sobic009G015000 Sobic002G253000 Sobic002G253000 Sobic001G041000--Sobic002G253000 Sobic004G128000 Sobic004G128000 Sobic001G041000--Sobic004G128000 Sobic010G057100 Sobic010G057100 Sobic001G041000--Sobic010G057100 Sobic004G099500 Sobic004G099500 Sobic001G041000--Sobic004G099500 Sobic006G244800 Sobic006G244800 Sobic001G041000--Sobic006G244800 Sobic007G168400 Sobic007G168400 Sobic001G041000--Sobic007G168400 Sobic003G187100 Sobic003G187100 Sobic001G041000--Sobic003G187100 Sobic004G259700 Sobic004G259700 Sobic001G041000--Sobic004G259700 Sobic009G015000--Sobic010G057100 Sobic009G015000--Sobic004G099500 Sobic009G015000--Sobic004G128000 Sobic007G172300 Sobic007G172300 Sobic009G015000--Sobic007G172300 Sobic004G335600 Sobic004G335600 Sobic009G015000--Sobic004G335600 Sobic003G322532 Sobic003G322532 Sobic009G015000--Sobic003G322532 Sobic009G015000--Sobic002G253000 Sobic003G057366 Sobic003G057366 Sobic009G015000--Sobic003G057366 Sobic003G395500 Sobic003G395500 Sobic009G015000--Sobic003G395500 Sobic002G318501 Sobic002G318501 Sobic002G253000--Sobic002G318501 Sobic002G253000--Sobic010G057100 Sobic002G253000--Sobic009G015000 Sobic005G016600 Sobic005G016600 Sobic002G253000--Sobic005G016600 Sobic002G314700 Sobic002G314700 Sobic002G253000--Sobic002G314700 Sobic004G342900 Sobic004G342900 Sobic002G253000--Sobic004G342900 Sobic002G253000--Sobic004G099500 Sobic002G253000--Sobic004G128000 Sobic001G062600 Sobic001G062600 Sobic002G253000--Sobic001G062600 Sobic004G128000--Sobic009G015000 Sobic004G128000--Sobic010G057100 Sobic004G128000--Sobic004G099500 Sobic004G128000--Sobic007G172300 Sobic009G206700 Sobic009G206700 Sobic004G128000--Sobic009G206700 Sobic007G045700 Sobic007G045700 Sobic004G128000--Sobic007G045700 Sobic004G128000--Sobic002G253000 Sobic003G338966 Sobic003G338966 Sobic004G128000--Sobic003G338966 Sobic009G177700 Sobic009G177700 Sobic004G128000--Sobic009G177700 Sobic010G057100--Sobic004G099500 Sobic010G057100--Sobic009G015000 Sobic010G057100--Sobic004G335600 Sobic010G057100--Sobic003G057366 Sobic010G057100--Sobic003G322532 Sobic010G057100--Sobic004G128000 Sobic010G057100--Sobic009G177700 Sobic010G057100--Sobic007G045700 Sobic001G313200 Sobic001G313200 Sobic010G057100--Sobic001G313200 Sobic004G099500--Sobic010G057100 Sobic004G099500--Sobic004G335600 Sobic004G099500--Sobic009G015000 Sobic004G099500--Sobic003G338966 Sobic008G172100 Sobic008G172100 Sobic004G099500--Sobic008G172100 Sobic004G099500--Sobic007G045700 Sobic004G099500--Sobic003G057366 Sobic004G271400 Sobic004G271400 Sobic004G099500--Sobic004G271400 Sobic004G099500--Sobic003G322532 Sobic006G244800--Sobic004G099500 Sobic006G244800--Sobic009G015000 Sobic007G198000 Sobic007G198000 Sobic006G244800--Sobic007G198000 Sobic006G244800--Sobic003G338966 Sobic001G054800 Sobic001G054800 Sobic006G244800--Sobic001G054800 Sobic006G186700 Sobic006G186700 Sobic006G244800--Sobic006G186700 Sobic006G244800--Sobic010G057100 Sobic001G425300 Sobic001G425300 Sobic006G244800--Sobic001G425300 Sobic006G244800--Sobic003G322532 Sobic007G168400--Sobic004G259700 Sobic010G013100 Sobic010G013100 Sobic007G168400--Sobic010G013100 Sobic001G416900 Sobic001G416900 Sobic007G168400--Sobic001G416900 Sobic007G168400--Sobic004G099500 Sobic009G167500 Sobic009G167500 Sobic007G168400--Sobic009G167500 Sobic002G276000 Sobic002G276000 Sobic007G168400--Sobic002G276000 Sobic003G057600 Sobic003G057600 Sobic007G168400--Sobic003G057600 Sobic007G168400--Sobic001G054800 Sobic001G009700 Sobic001G009700 Sobic007G168400--Sobic001G009700 Sobic003G187100--Sobic007G172300 Sobic003G187100--Sobic003G395500 Sobic003G187100--Sobic004G259700 Sobic003G187100--Sobic009G167500 Sobic003G187100--Sobic009G015000 Sobic003G187100--Sobic003G057366 Sobic003G187100--Sobic001G041000 Sobic003G187100--Sobic004G128000 Sobic003G187100--Sobic004G099500 Sobic004G259700--Sobic001G416900 Sobic004G259700--Sobic009G167500 Sobic009G123000 Sobic009G123000 Sobic004G259700--Sobic009G123000 Sobic004G259700--Sobic004G099500 Sobic001G416800 Sobic001G416800 Sobic004G259700--Sobic001G416800 Sobic003G127600 Sobic003G127600 Sobic004G259700--Sobic003G127600 Sobic004G259700--Sobic007G172300 Sobic004G259700--Sobic003G057366 Sobic004G259700--Sobic007G168400
Octagon: transcription factors


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