Gene annotation
Transcriptome id Sobic.001G111800.1
Synonym Sb01g009960
Functional annotation 3,4-dihydroxy-2-butanone kinase, putative, expressed
UniProt C5WMZ1
Pfam PF02734 PF02733
Panther DB PTHR28629 PTHR28629:SF4
NCBI CDD -
KEGG Orthology K00863; DAK, triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing)
Gene Ontology GO:0006071; glycerol metabolic process GO:0004371glycerone kinase activity


Orthologs (automatic annotation)
TAIR AT3G17770 : Dihydroxyacetone kinase
RAP-DB (Rice) LOC_Os03g51000.2 : 3,4-dihydroxy-2-butanone kinase, putative, expressed
MaizeGDB (Corn) Zm00025a007908
Brachypodium KQK13500 , KQK13501
Barley HORVU4Hr1G008470.19 , HORVU4Hr1G008470.18 , HORVU4Hr1G008470.13 , HORVU4Hr1G008470.12 , HORVU4Hr1G008470.11 , HORVU4Hr1G008470.10 , HORVU4Hr1G008470.17 , HORVU4Hr1G008470.16 , HORVU4Hr1G008470.15 , HORVU4Hr1G008470.14 , HORVU4Hr1G008470.20 , HORVU4Hr1G008470.9 , HORVU4Hr1G008470.8 , HORVU4Hr1G008470.3 , HORVU4Hr1G008470.2 , HORVU4Hr1G008470.1 , HORVU4Hr1G008470.7 , HORVU4Hr1G008470.6 , HORVU4Hr1G008470.5 , HORVU4Hr1G008470.4
Wheat TraesCS4D02G051400 , TraesCS4D02G051400 , TraesCS4D02G051400 , TraesCS4B02G051300 , TraesCS4B02G051300 , TraesCS4B02G051300 , TraesCS4A02G263900 , TraesCS4A02G263900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G111800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G000200 expressed protein -
2 Sobic.001G015800 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
3 Sobic.004G177300 SPRY-domain containing protein, putative, expressed -
4 Sobic.003G046300 ubiquitin carboxyl-terminal hydrolase 14, putative, expressed K11836: USP5_13, ubiquitin carboxyl-terminal hydrolase 5/13
5 Sobic.001G293700 expressed protein -
6 Sobic.004G145000 importin-8, putative, expressed -
7 Sobic.001G430400 Ser/Thr protein phosphatase family protein, putative, expressed -
8 Sobic.006G115600 expressed protein -
9 Sobic.007G163100 expressed protein K14972: PAXIP1, PAX-interacting protein 1
10 Sobic.006G034500 elongation factor Tu, putative, expressed K03267: ERF3, peptide chain release factor subunit 3
11 Sobic.002G028700 succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed K00234: SDHA, succinate dehydrogenase (ubiquinone) flavoprotein subunit
12 Sobic.004G261600 expressed protein -
13 Sobic.003G218300 C-5 cytosine-specific DNA methylase, putative, expressed K15336: TRDMT1, tRNA (cytosine38-C5)-methyltransferase
14 Sobic.003G186700 ubiquitin carboxyl-terminal hydrolase 6, putative, expressed K11843: USP14, ubiquitin carboxyl-terminal hydrolase 14
15 Sobic.010G228400 zinc finger, C3HC4 type, domain containing protein, expressed -
16 Sobic.002G020700 WD domain, G-beta repeat domain containing protein, expressed K14018: PLAA, DOA1, phospholipase A-2-activating protein
17 Sobic.002G008800 PTEN, putative, expressed K01110: phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN
18 Sobic.001G534600 transmembrane and coiled-coil domain-containing protein 4, putative, expressed -
19 Sobic.010G020300 spastin, putative, expressed K13254: spastin
20 Sobic.010G004100 expressed protein -


Gene co-expression network
sample Sobic001G111800 Sobic001G111800 Sobic007G000200 Sobic007G000200 Sobic001G111800--Sobic007G000200 Sobic001G015800 Sobic001G015800 Sobic001G111800--Sobic001G015800 Sobic004G177300 Sobic004G177300 Sobic001G111800--Sobic004G177300 Sobic003G046300 Sobic003G046300 Sobic001G111800--Sobic003G046300 Sobic001G293700 Sobic001G293700 Sobic001G111800--Sobic001G293700 Sobic004G145000 Sobic004G145000 Sobic001G111800--Sobic004G145000 Sobic001G430400 Sobic001G430400 Sobic001G111800--Sobic001G430400 Sobic006G115600 Sobic006G115600 Sobic001G111800--Sobic006G115600 Sobic007G163100 Sobic007G163100 Sobic001G111800--Sobic007G163100 Sobic006G032300 Sobic006G032300 Sobic007G000200--Sobic006G032300 Sobic007G000200--Sobic003G046300 Sobic008G002300 Sobic008G002300 Sobic007G000200--Sobic008G002300 Sobic002G245000 Sobic002G245000 Sobic007G000200--Sobic002G245000 Sobic007G000200--Sobic001G430400 Sobic002G164200 Sobic002G164200 Sobic007G000200--Sobic002G164200 Sobic003G089000 Sobic003G089000 Sobic007G000200--Sobic003G089000 Sobic001G542450 Sobic001G542450 Sobic007G000200--Sobic001G542450 Sobic006G088200 Sobic006G088200 Sobic007G000200--Sobic006G088200 Sobic001G163400 Sobic001G163400 Sobic001G015800--Sobic001G163400 Sobic008G124900 Sobic008G124900 Sobic001G015800--Sobic008G124900 Sobic003G104000 Sobic003G104000 Sobic001G015800--Sobic003G104000 Sobic003G331400 Sobic003G331400 Sobic001G015800--Sobic003G331400 Sobic006G033200 Sobic006G033200 Sobic001G015800--Sobic006G033200 Sobic004G286500 Sobic004G286500 Sobic001G015800--Sobic004G286500 Sobic002G134600 Sobic002G134600 Sobic001G015800--Sobic002G134600 Sobic001G096000 Sobic001G096000 Sobic001G015800--Sobic001G096000 Sobic003G337300 Sobic003G337300 Sobic001G015800--Sobic003G337300 Sobic002G008800 Sobic002G008800 Sobic004G177300--Sobic002G008800 Sobic004G177300--Sobic003G089000 Sobic002G262900 Sobic002G262900 Sobic004G177300--Sobic002G262900 Sobic004G065000 Sobic004G065000 Sobic004G177300--Sobic004G065000 Sobic010G020300 Sobic010G020300 Sobic004G177300--Sobic010G020300 Sobic010G261600 Sobic010G261600 Sobic004G177300--Sobic010G261600 Sobic005G059600 Sobic005G059600 Sobic004G177300--Sobic005G059600 Sobic009G133500 Sobic009G133500 Sobic004G177300--Sobic009G133500 Sobic002G263600 Sobic002G263600 Sobic004G177300--Sobic002G263600 Sobic006G188500 Sobic006G188500 Sobic003G046300--Sobic006G188500 Sobic008G103300 Sobic008G103300 Sobic003G046300--Sobic008G103300 Sobic002G142900 Sobic002G142900 Sobic003G046300--Sobic002G142900 Sobic002G371700 Sobic002G371700 Sobic003G046300--Sobic002G371700 Sobic003G132000 Sobic003G132000 Sobic003G046300--Sobic003G132000 Sobic003G046300--Sobic007G000200 Sobic003G046300--Sobic002G263600 Sobic001G455800 Sobic001G455800 Sobic003G046300--Sobic001G455800 Sobic001G487100 Sobic001G487100 Sobic003G046300--Sobic001G487100 Sobic009G069000 Sobic009G069000 Sobic001G293700--Sobic009G069000 Sobic002G029100 Sobic002G029100 Sobic001G293700--Sobic002G029100 Sobic001G293700--Sobic001G430400 Sobic001G293700--Sobic007G000200 Sobic009G255600 Sobic009G255600 Sobic001G293700--Sobic009G255600 Sobic001G293700--Sobic001G111800 Sobic004G317300 Sobic004G317300 Sobic001G293700--Sobic004G317300 Sobic001G293700--Sobic008G002300 Sobic007G018400 Sobic007G018400 Sobic001G293700--Sobic007G018400 Sobic006G139100 Sobic006G139100 Sobic004G145000--Sobic006G139100 Sobic004G340400 Sobic004G340400 Sobic004G145000--Sobic004G340400 Sobic006G034500 Sobic006G034500 Sobic004G145000--Sobic006G034500 Sobic001G447300 Sobic001G447300 Sobic004G145000--Sobic001G447300 Sobic004G145000--Sobic001G455800 Sobic002G256700 Sobic002G256700 Sobic004G145000--Sobic002G256700 Sobic003G036400 Sobic003G036400 Sobic004G145000--Sobic003G036400 Sobic004G145000--Sobic003G104000 Sobic006G166200 Sobic006G166200 Sobic004G145000--Sobic006G166200 Sobic001G430400--Sobic002G256700 Sobic008G144900 Sobic008G144900 Sobic001G430400--Sobic008G144900 Sobic008G087866 Sobic008G087866 Sobic001G430400--Sobic008G087866 Sobic001G191700 Sobic001G191700 Sobic001G430400--Sobic001G191700 Sobic001G117200 Sobic001G117200 Sobic001G430400--Sobic001G117200 Sobic001G430400--Sobic006G032300 Sobic001G430400--Sobic007G000200 Sobic001G277900 Sobic001G277900 Sobic001G430400--Sobic001G277900 Sobic002G371300 Sobic002G371300 Sobic001G430400--Sobic002G371300 Sobic007G075400 Sobic007G075400 Sobic006G115600--Sobic007G075400 Sobic002G045600 Sobic002G045600 Sobic006G115600--Sobic002G045600 Sobic004G264400 Sobic004G264400 Sobic006G115600--Sobic004G264400 Sobic001G050200 Sobic001G050200 Sobic006G115600--Sobic001G050200 Sobic010G139600 Sobic010G139600 Sobic006G115600--Sobic010G139600 Sobic004G331100 Sobic004G331100 Sobic006G115600--Sobic004G331100 Sobic006G115600--Sobic007G163100 Sobic003G118200 Sobic003G118200 Sobic006G115600--Sobic003G118200 Sobic010G278200 Sobic010G278200 Sobic006G115600--Sobic010G278200 Sobic003G408600 Sobic003G408600 Sobic007G163100--Sobic003G408600 Sobic008G118200 Sobic008G118200 Sobic007G163100--Sobic008G118200 Sobic007G163100--Sobic002G045600 Sobic007G163100--Sobic001G117200 Sobic003G072200 Sobic003G072200 Sobic007G163100--Sobic003G072200 Sobic003G422500 Sobic003G422500 Sobic007G163100--Sobic003G422500 Sobic001G540400 Sobic001G540400 Sobic007G163100--Sobic001G540400 Sobic001G289800 Sobic001G289800 Sobic007G163100--Sobic001G289800 Sobic004G113400 Sobic004G113400 Sobic007G163100--Sobic004G113400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.