Gene annotation
Transcriptome id Sobic.001G293700.2
Synonym
Functional annotation expressed protein
UniProt A0A1B6QLV5
Pfam PF06650 PF06101
Panther DB PTHR16166 PTHR16166:SF105
NCBI CDD KOG1809; Vacuolar protein sorting-associated protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G17140 : pleckstrin homology (PH) domain-containing protein
RAP-DB (Rice) LOC_Os10g41560.1 : expressed protein
MaizeGDB (Corn) Zm00025a042216 , Zm00025a051878
Brachypodium PNT67930 , PNT67928 , PNT67929 , PNT67927
Barley HORVU1Hr1G055000.1 , HORVU1Hr1G055000.3 , HORVU1Hr1G055000.2 , HORVU1Hr1G055000.5 , HORVU1Hr1G055000.4 , HORVU1Hr1G055000.6 , HORVU1Hr1G055000.33 , HORVU1Hr1G055000.32 , HORVU1Hr1G055000.31 , HORVU1Hr1G055000.30 , HORVU1Hr1G055000.35 , HORVU1Hr1G055000.28 , HORVU1Hr1G055000.29 , HORVU1Hr1G055000.20 , HORVU1Hr1G055000.21 , HORVU1Hr1G055000.22 , HORVU1Hr1G055000.23 , HORVU1Hr1G055000.24 , HORVU1Hr1G055000.25 , HORVU1Hr1G055000.26 , HORVU1Hr1G055000.27 , HORVU1Hr1G055000.19 , HORVU1Hr1G055000.18 , HORVU1Hr1G055000.15 , HORVU1Hr1G055000.14 , HORVU1Hr1G055000.17 , HORVU1Hr1G055000.16 , HORVU1Hr1G055000.11 , HORVU1Hr1G055000.10 , HORVU1Hr1G055000.13 , HORVU1Hr1G055000.12
Wheat TraesCS1B02G228900 , TraesCS1B02G228900 , TraesCS1A02G215400 , TraesCS1B02G228900 , TraesCS1D02G217900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G069000 AGC_AGC_other_NDRh_TRCd.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
2 Sobic.002G029100 GYF domain containing protein, putative, expressed -
3 Sobic.001G430400 Ser/Thr protein phosphatase family protein, putative, expressed -
4 Sobic.007G000200 expressed protein -
5 Sobic.009G255600 cleavage and polyadenylation specificity factor, putative, expressed K10610: DNA damage-binding protein 1
6 Sobic.001G111800 3,4-dihydroxy-2-butanone kinase, putative, expressed K00863: DAK, triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing)
7 Sobic.004G317300 "O1(Ortholog in maize:Wang et al., 2012)"(PubMedID : 31659891)@XI-I, putative, expressed K10357: myosin V
8 Sobic.008G002300 ATSIZ1/SIZ1, putative, expressed -
9 Sobic.007G018400 expressed protein -
10 Sobic.006G032300 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
11 Sobic.001G191700 expressed protein -
12 Sobic.009G020500 expressed protein -
13 Sobic.002G245000 HECT-domain domain containing protein, expressed K10591: NEDD4, E3 ubiquitin-protein ligase NEDD4
14 Sobic.002G164200 PFT1, putative, expressed K15168: mediator of RNA polymerase II transcription subunit 25
15 Sobic.009G233200 Sucrose phosphate synthase genes(PubMedID : 24456189)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
16 Sobic.009G126300 RING E3 ligase protein, putative, expressed K16279: E3 ubiquitin-protein ligase KEG
17 Sobic.004G311400 PHD-finger domain containing protein, putative, expressed -
18 Sobic.008G144900 DUF221 domain containing protein, expressed -
19 Sobic.003G214600 transcriptional corepressor LEUNIG, putative, expressed -
20 Sobic.001G137000 aberrant pollen transmission 1, putative, expressed -


Gene co-expression network
sample Sobic001G293700 Sobic001G293700 Sobic009G069000 Sobic009G069000 Sobic001G293700--Sobic009G069000 Sobic002G029100 Sobic002G029100 Sobic001G293700--Sobic002G029100 Sobic001G430400 Sobic001G430400 Sobic001G293700--Sobic001G430400 Sobic007G000200 Sobic007G000200 Sobic001G293700--Sobic007G000200 Sobic009G255600 Sobic009G255600 Sobic001G293700--Sobic009G255600 Sobic001G111800 Sobic001G111800 Sobic001G293700--Sobic001G111800 Sobic004G317300 Sobic004G317300 Sobic001G293700--Sobic004G317300 Sobic008G002300 Sobic008G002300 Sobic001G293700--Sobic008G002300 Sobic007G018400 Sobic007G018400 Sobic001G293700--Sobic007G018400 Sobic007G028100 Sobic007G028100 Sobic009G069000--Sobic007G028100 Sobic009G069000--Sobic007G000200 Sobic006G179400 Sobic006G179400 Sobic009G069000--Sobic006G179400 Sobic006G139100 Sobic006G139100 Sobic009G069000--Sobic006G139100 Sobic001G265600 Sobic001G265600 Sobic009G069000--Sobic001G265600 Sobic009G069000--Sobic001G293700 Sobic002G245000 Sobic002G245000 Sobic009G069000--Sobic002G245000 Sobic005G197100 Sobic005G197100 Sobic009G069000--Sobic005G197100 Sobic003G089000 Sobic003G089000 Sobic009G069000--Sobic003G089000 Sobic004G311400 Sobic004G311400 Sobic002G029100--Sobic004G311400 Sobic003G214600 Sobic003G214600 Sobic002G029100--Sobic003G214600 Sobic005G200800 Sobic005G200800 Sobic002G029100--Sobic005G200800 Sobic002G029100--Sobic009G255600 Sobic007G183300 Sobic007G183300 Sobic002G029100--Sobic007G183300 Sobic002G029100--Sobic002G245000 Sobic010G186600 Sobic010G186600 Sobic002G029100--Sobic010G186600 Sobic002G164200 Sobic002G164200 Sobic002G029100--Sobic002G164200 Sobic002G029100--Sobic008G002300 Sobic002G256700 Sobic002G256700 Sobic001G430400--Sobic002G256700 Sobic008G144900 Sobic008G144900 Sobic001G430400--Sobic008G144900 Sobic008G087866 Sobic008G087866 Sobic001G430400--Sobic008G087866 Sobic001G191700 Sobic001G191700 Sobic001G430400--Sobic001G191700 Sobic001G117200 Sobic001G117200 Sobic001G430400--Sobic001G117200 Sobic006G032300 Sobic006G032300 Sobic001G430400--Sobic006G032300 Sobic001G430400--Sobic007G000200 Sobic001G277900 Sobic001G277900 Sobic001G430400--Sobic001G277900 Sobic002G371300 Sobic002G371300 Sobic001G430400--Sobic002G371300 Sobic007G000200--Sobic006G032300 Sobic003G046300 Sobic003G046300 Sobic007G000200--Sobic003G046300 Sobic007G000200--Sobic008G002300 Sobic007G000200--Sobic002G245000 Sobic007G000200--Sobic001G430400 Sobic007G000200--Sobic002G164200 Sobic007G000200--Sobic003G089000 Sobic001G542450 Sobic001G542450 Sobic007G000200--Sobic001G542450 Sobic006G088200 Sobic006G088200 Sobic007G000200--Sobic006G088200 Sobic009G255600--Sobic010G186600 Sobic003G416700 Sobic003G416700 Sobic009G255600--Sobic003G416700 Sobic009G255600--Sobic003G214600 Sobic009G255600--Sobic005G200800 Sobic009G119000 Sobic009G119000 Sobic009G255600--Sobic009G119000 Sobic009G255600--Sobic002G029100 Sobic003G042400 Sobic003G042400 Sobic009G255600--Sobic003G042400 Sobic001G291800 Sobic001G291800 Sobic009G255600--Sobic001G291800 Sobic003G360400 Sobic003G360400 Sobic009G255600--Sobic003G360400 Sobic001G111800--Sobic007G000200 Sobic001G015800 Sobic001G015800 Sobic001G111800--Sobic001G015800 Sobic004G177300 Sobic004G177300 Sobic001G111800--Sobic004G177300 Sobic001G111800--Sobic003G046300 Sobic001G111800--Sobic001G293700 Sobic004G145000 Sobic004G145000 Sobic001G111800--Sobic004G145000 Sobic001G111800--Sobic001G430400 Sobic006G115600 Sobic006G115600 Sobic001G111800--Sobic006G115600 Sobic007G163100 Sobic007G163100 Sobic001G111800--Sobic007G163100 Sobic005G100700 Sobic005G100700 Sobic004G317300--Sobic005G100700 Sobic004G317300--Sobic002G029100 Sobic004G317300--Sobic003G214600 Sobic006G019300 Sobic006G019300 Sobic004G317300--Sobic006G019300 Sobic003G388100 Sobic003G388100 Sobic004G317300--Sobic003G388100 Sobic004G317300--Sobic001G277900 Sobic010G089400 Sobic010G089400 Sobic004G317300--Sobic010G089400 Sobic006G169800 Sobic006G169800 Sobic004G317300--Sobic006G169800 Sobic004G317300--Sobic003G360400 Sobic008G002300--Sobic007G000200 Sobic008G002300--Sobic001G542450 Sobic008G002300--Sobic006G088200 Sobic001G178300 Sobic001G178300 Sobic008G002300--Sobic001G178300 Sobic008G002300--Sobic006G032300 Sobic008G002300--Sobic002G029100 Sobic008G002300--Sobic002G256700 Sobic008G002300--Sobic002G245000 Sobic001G493700 Sobic001G493700 Sobic008G002300--Sobic001G493700 Sobic007G018400--Sobic006G032300 Sobic001G542400 Sobic001G542400 Sobic007G018400--Sobic001G542400 Sobic002G154000 Sobic002G154000 Sobic007G018400--Sobic002G154000 Sobic007G018400--Sobic001G191700 Sobic001G299700 Sobic001G299700 Sobic007G018400--Sobic001G299700 Sobic001G400500 Sobic001G400500 Sobic007G018400--Sobic001G400500 Sobic003G043000 Sobic003G043000 Sobic007G018400--Sobic003G043000 Sobic002G399800 Sobic002G399800 Sobic007G018400--Sobic002G399800 Sobic004G053500 Sobic004G053500 Sobic007G018400--Sobic004G053500
Octagon: transcription factors


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