Gene annotation
Transcriptome id Sobic.001G173600.1
Synonym Sb01g015120
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5WT93
Pfam PF13639
Panther DB PTHR22763 PTHR22763:SF11
NCBI CDD KOG1493; Anaphase-promoting complex (APC), subunit 11
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G15790 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os03g40170.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a007201
Brachypodium -
Barley HORVU3Hr1G080040.7 , HORVU3Hr1G080040.4 , HORVU3Hr1G080040.1 , HORVU3Hr1G080040.2 , HORVU3Hr1G080040.5 , HORVU3Hr1G080040.3
Wheat TraesCS3A02G339000 , TraesCS3B02G370700 , TraesCS3D02G332600
Populus PNT40725 , PNT40724 , PNS96164 , PNS96163


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G021900 hydrolase, putative, expressed K14664: IAA-amino acid hydrolase
2 Sobic.009G179950 - -
3 Sobic.004G195300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.004G078800 transcription factor, putative, expressed K14431: transcription factor TGA
5 Sobic.003G049300 expressed protein -
6 Sobic.004G260300 expressed protein -
7 Sobic.010G236100 C2 domain containing protein, expressed -
8 Sobic.008G151300 expressed protein -
9 Sobic.004G287000 rho-GTPase-activating protein-related, putative, expressed -
10 Sobic.010G262200 B-box (BBX) protein(PubMedID : 30626335)@B-box zinc finger family protein, putative, expressed -
11 Sobic.010G225100 DUF640 domain containing protein, putative, expressed -
12 Sobic.003G012800 AP2 domain containing protein, expressed -
13 Sobic.006G148000 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
14 Sobic.007G108700 expressed protein -
15 Sobic.004G333900 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
16 Sobic.004G297200 DUF630/DUF632 domains containing protein, putative, expressed -
17 Sobic.001G054400 expressed protein -
18 Sobic.003G035700 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA2 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
19 Sobic.004G232400 VQ domain containing protein, putative, expressed -
20 Sobic.001G516600 AMP-binding domain containing protein, expressed K10526: OPC-8:0 CoA ligase 1


Gene co-expression network
sample Sobic001G173600 Sobic001G173600 Sobic001G021900 Sobic001G021900 Sobic001G173600--Sobic001G021900 Sobic009G179950 Sobic009G179950 Sobic001G173600--Sobic009G179950 Sobic004G195300 Sobic004G195300 Sobic001G173600--Sobic004G195300 Sobic004G078800 Sobic004G078800 Sobic001G173600--Sobic004G078800 Sobic003G049300 Sobic003G049300 Sobic001G173600--Sobic003G049300 Sobic004G260300 Sobic004G260300 Sobic001G173600--Sobic004G260300 Sobic010G236100 Sobic010G236100 Sobic001G173600--Sobic010G236100 Sobic008G151300 Sobic008G151300 Sobic001G173600--Sobic008G151300 Sobic004G287000 Sobic004G287000 Sobic001G173600--Sobic004G287000 Sobic002G235500 Sobic002G235500 Sobic001G021900--Sobic002G235500 Sobic003G117600 Sobic003G117600 Sobic001G021900--Sobic003G117600 Sobic003G139300 Sobic003G139300 Sobic001G021900--Sobic003G139300 Sobic001G325400 Sobic001G325400 Sobic001G021900--Sobic001G325400 Sobic009G035200 Sobic009G035200 Sobic001G021900--Sobic009G035200 Sobic010G185000 Sobic010G185000 Sobic001G021900--Sobic010G185000 Sobic001G119000 Sobic001G119000 Sobic001G021900--Sobic001G119000 Sobic001G082600 Sobic001G082600 Sobic001G021900--Sobic001G082600 Sobic006G092500 Sobic006G092500 Sobic001G021900--Sobic006G092500 Sobic001G009500 Sobic001G009500 Sobic009G179950--Sobic001G009500 Sobic001G389000 Sobic001G389000 Sobic009G179950--Sobic001G389000 Sobic009G179900 Sobic009G179900 Sobic009G179950--Sobic009G179900 Sobic003G343900 Sobic003G343900 Sobic009G179950--Sobic003G343900 Sobic008G106700 Sobic008G106700 Sobic009G179950--Sobic008G106700 Sobic009G183400 Sobic009G183400 Sobic009G179950--Sobic009G183400 Sobic004G061200 Sobic004G061200 Sobic009G179950--Sobic004G061200 Sobic001G097600 Sobic001G097600 Sobic009G179950--Sobic001G097600 Sobic005G093000 Sobic005G093000 Sobic009G179950--Sobic005G093000 Sobic006G089300 Sobic006G089300 Sobic004G195300--Sobic006G089300 Sobic002G202600 Sobic002G202600 Sobic004G195300--Sobic002G202600 Sobic002G359300 Sobic002G359300 Sobic004G195300--Sobic002G359300 Sobic010G200700 Sobic010G200700 Sobic004G195300--Sobic010G200700 Sobic010G078600 Sobic010G078600 Sobic004G195300--Sobic010G078600 Sobic003G035700 Sobic003G035700 Sobic004G195300--Sobic003G035700 Sobic004G195300--Sobic001G119000 Sobic009G066800 Sobic009G066800 Sobic004G195300--Sobic009G066800 Sobic001G054400 Sobic001G054400 Sobic004G195300--Sobic001G054400 Sobic010G192432 Sobic010G192432 Sobic004G078800--Sobic010G192432 Sobic010G192366 Sobic010G192366 Sobic004G078800--Sobic010G192366 Sobic001G483600 Sobic001G483600 Sobic004G078800--Sobic001G483600 Sobic010G069900 Sobic010G069900 Sobic004G078800--Sobic010G069900 Sobic003G095400 Sobic003G095400 Sobic004G078800--Sobic003G095400 Sobic010G071400 Sobic010G071400 Sobic004G078800--Sobic010G071400 Sobic003G227700 Sobic003G227700 Sobic004G078800--Sobic003G227700 Sobic004G177000 Sobic004G177000 Sobic004G078800--Sobic004G177000 Sobic002G318200 Sobic002G318200 Sobic004G078800--Sobic002G318200 Sobic002G242500 Sobic002G242500 Sobic003G049300--Sobic002G242500 Sobic004G145200 Sobic004G145200 Sobic003G049300--Sobic004G145200 Sobic010G225100 Sobic010G225100 Sobic003G049300--Sobic010G225100 Sobic006G076201 Sobic006G076201 Sobic003G049300--Sobic006G076201 Sobic002G210901 Sobic002G210901 Sobic003G049300--Sobic002G210901 Sobic009G149400 Sobic009G149400 Sobic003G049300--Sobic009G149400 Sobic010G228000 Sobic010G228000 Sobic003G049300--Sobic010G228000 Sobic009G155200 Sobic009G155200 Sobic003G049300--Sobic009G155200 Sobic010G236500 Sobic010G236500 Sobic003G049300--Sobic010G236500 Sobic005G103300 Sobic005G103300 Sobic004G260300--Sobic005G103300 Sobic004G260300--Sobic001G389000 Sobic005G103500 Sobic005G103500 Sobic004G260300--Sobic005G103500 Sobic004G260300--Sobic001G097600 Sobic004G260300--Sobic009G035200 Sobic001G115300 Sobic001G115300 Sobic004G260300--Sobic001G115300 Sobic009G159400 Sobic009G159400 Sobic004G260300--Sobic009G159400 Sobic004G260300--Sobic001G119000 Sobic009G111200 Sobic009G111200 Sobic004G260300--Sobic009G111200 Sobic005G063300 Sobic005G063300 Sobic010G236100--Sobic005G063300 Sobic002G318100 Sobic002G318100 Sobic010G236100--Sobic002G318100 Sobic010G236100--Sobic001G082600 Sobic007G005700 Sobic007G005700 Sobic010G236100--Sobic007G005700 Sobic004G245600 Sobic004G245600 Sobic010G236100--Sobic004G245600 Sobic004G015900 Sobic004G015900 Sobic010G236100--Sobic004G015900 Sobic003G079400 Sobic003G079400 Sobic010G236100--Sobic003G079400 Sobic010G236100--Sobic001G389000 Sobic005G168800 Sobic005G168800 Sobic010G236100--Sobic005G168800 Sobic008G177800 Sobic008G177800 Sobic008G151300--Sobic008G177800 Sobic001G516600 Sobic001G516600 Sobic008G151300--Sobic001G516600 Sobic010G262200 Sobic010G262200 Sobic008G151300--Sobic010G262200 Sobic004G333900 Sobic004G333900 Sobic008G151300--Sobic004G333900 Sobic005G010200 Sobic005G010200 Sobic008G151300--Sobic005G010200 Sobic001G513700 Sobic001G513700 Sobic008G151300--Sobic001G513700 Sobic010G234600 Sobic010G234600 Sobic008G151300--Sobic010G234600 Sobic002G272900 Sobic002G272900 Sobic008G151300--Sobic002G272900 Sobic002G294700 Sobic002G294700 Sobic008G151300--Sobic002G294700 Sobic005G013600 Sobic005G013600 Sobic004G287000--Sobic005G013600 Sobic008G050500 Sobic008G050500 Sobic004G287000--Sobic008G050500 Sobic004G287000--Sobic002G235500 Sobic004G287000--Sobic004G260300 Sobic004G287000--Sobic001G021900 Sobic006G149400 Sobic006G149400 Sobic004G287000--Sobic006G149400 Sobic003G288100 Sobic003G288100 Sobic004G287000--Sobic003G288100 Sobic010G213800 Sobic010G213800 Sobic004G287000--Sobic010G213800 Sobic004G145900 Sobic004G145900 Sobic004G287000--Sobic004G145900
Octagon: transcription factors


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