Gene annotation
Transcriptome id Sobic.001G205500.1
Synonym Sb01g018160
Functional annotation ATP/GTP binding protein, putative, expressed
UniProt C5WXA2
Pfam -
Panther DB PTHR33704 PTHR33704:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G10010 : -
RAP-DB (Rice) LOC_Os04g56590.1 : ATP/GTP binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a023701 , Zm00025a056358 , Zm00025a010919 , Zm00025a034234 , Zm00025a004357
Brachypodium PNT62061 , PNT62062 , KQJ85107
Barley -
Wheat TraesCS2D02G497800 , TraesCS2A02G497600 , TraesCS2A02G497600 , TraesCS2B02G525800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G282100 peptidase, putative, expressed K06013: STE24 endopeptidase
2 Sobic.003G132000 proteasome subunit, putative, expressed K12176: COPS2, CSN2, COP9 signalosome complex subunit 2
3 Sobic.003G004600 expressed protein -
4 Sobic.009G002000 ankyrin repeat family protein, putative, expressed -
5 Sobic.008G162000 rhodanese-like domain containing protein, putative, expressed K01011: TST, MPST, thiosulfate/3-mercaptopyruvate sulfurtransferase
6 Sobic.001G506000 N-acetylglucosaminyltransferase, putative, expressed -
7 Sobic.002G280900 la domain containing protein, putative, expressed K18757: la-related protein 1
8 Sobic.006G139100 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
9 Sobic.003G050900 dolichyl-P-Man Man-PP-dolichyl mannosyltransferase, putative, expressed K03845: alpha-1,3-mannosyltransferase
10 Sobic.002G185900 zinc finger protein-related, putative, expressed -
11 Sobic.003G261800 expressed protein -
12 Sobic.006G245100 Ca exchanger(PubMedID : 22196357)@sodium/calcium exchanger protein, putative, expressed K07300: chaA, Ca2+:H+ antiporter
13 Sobic.001G007800 WD domain, G-beta repeat domain containing protein, expressed K11806: DCAF13, DDB1- and CUL4-associated factor 13
14 Sobic.001G487100 RNA recognition motif containing protein, putative, expressed -
15 Sobic.005G144201 - -
16 Sobic.007G042900 BSD domain-containing protein, putative, expressed K03141: TFIIH1, GTF2H1, transcription initiation factor TFIIH subunit 1
17 Sobic.002G277200 rRNA-processing protein FCF, putative, expressed K14773: U3 small nucleolar RNA-associated protein 23
18 Sobic.004G154300 ThiF family domain containing protein, putative, expressed K12164: UBA5, ubiquitin-like modifier-activating enzyme 5
19 Sobic.003G284000 CAMK_KIN1/SNF1/Nim1_like_AMPKh.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
20 Sobic.006G187100 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1


Gene co-expression network
sample Sobic001G205500 Sobic001G205500 Sobic004G282100 Sobic004G282100 Sobic001G205500--Sobic004G282100 Sobic003G132000 Sobic003G132000 Sobic001G205500--Sobic003G132000 Sobic003G004600 Sobic003G004600 Sobic001G205500--Sobic003G004600 Sobic009G002000 Sobic009G002000 Sobic001G205500--Sobic009G002000 Sobic008G162000 Sobic008G162000 Sobic001G205500--Sobic008G162000 Sobic001G506000 Sobic001G506000 Sobic001G205500--Sobic001G506000 Sobic002G280900 Sobic002G280900 Sobic001G205500--Sobic002G280900 Sobic006G139100 Sobic006G139100 Sobic001G205500--Sobic006G139100 Sobic003G050900 Sobic003G050900 Sobic001G205500--Sobic003G050900 Sobic004G282100--Sobic006G139100 Sobic003G121600 Sobic003G121600 Sobic004G282100--Sobic003G121600 Sobic007G117800 Sobic007G117800 Sobic004G282100--Sobic007G117800 Sobic004G154300 Sobic004G154300 Sobic004G282100--Sobic004G154300 Sobic003G148900 Sobic003G148900 Sobic004G282100--Sobic003G148900 Sobic004G282100--Sobic008G162000 Sobic001G458200 Sobic001G458200 Sobic004G282100--Sobic001G458200 Sobic006G095200 Sobic006G095200 Sobic004G282100--Sobic006G095200 Sobic003G150900 Sobic003G150900 Sobic004G282100--Sobic003G150900 Sobic001G114500 Sobic001G114500 Sobic003G132000--Sobic001G114500 Sobic006G270600 Sobic006G270600 Sobic003G132000--Sobic006G270600 Sobic003G046300 Sobic003G046300 Sobic003G132000--Sobic003G046300 Sobic008G103300 Sobic008G103300 Sobic003G132000--Sobic008G103300 Sobic001G487100 Sobic001G487100 Sobic003G132000--Sobic001G487100 Sobic004G192900 Sobic004G192900 Sobic003G132000--Sobic004G192900 Sobic009G164000 Sobic009G164000 Sobic003G132000--Sobic009G164000 Sobic002G371700 Sobic002G371700 Sobic003G132000--Sobic002G371700 Sobic003G363700 Sobic003G363700 Sobic003G132000--Sobic003G363700 Sobic002G306600 Sobic002G306600 Sobic003G004600--Sobic002G306600 Sobic003G221500 Sobic003G221500 Sobic003G004600--Sobic003G221500 Sobic004G256300 Sobic004G256300 Sobic003G004600--Sobic004G256300 Sobic003G222700 Sobic003G222700 Sobic003G004600--Sobic003G222700 Sobic007G148400 Sobic007G148400 Sobic003G004600--Sobic007G148400 Sobic004G063300 Sobic004G063300 Sobic003G004600--Sobic004G063300 Sobic003G010900 Sobic003G010900 Sobic003G004600--Sobic003G010900 Sobic003G004600--Sobic003G132000 Sobic003G128300 Sobic003G128300 Sobic003G004600--Sobic003G128300 Sobic002G277200 Sobic002G277200 Sobic009G002000--Sobic002G277200 Sobic009G030400 Sobic009G030400 Sobic009G002000--Sobic009G030400 Sobic009G201800 Sobic009G201800 Sobic009G002000--Sobic009G201800 Sobic001G115500 Sobic001G115500 Sobic009G002000--Sobic001G115500 Sobic008G118500 Sobic008G118500 Sobic009G002000--Sobic008G118500 Sobic005G084900 Sobic005G084900 Sobic009G002000--Sobic005G084900 Sobic009G102900 Sobic009G102900 Sobic009G002000--Sobic009G102900 Sobic001G157600 Sobic001G157600 Sobic009G002000--Sobic001G157600 Sobic009G258500 Sobic009G258500 Sobic009G002000--Sobic009G258500 Sobic002G044000 Sobic002G044000 Sobic008G162000--Sobic002G044000 Sobic007G152400 Sobic007G152400 Sobic008G162000--Sobic007G152400 Sobic009G070200 Sobic009G070200 Sobic008G162000--Sobic009G070200 Sobic008G162000--Sobic006G095200 Sobic008G162000--Sobic004G282100 Sobic008G162000--Sobic009G201800 Sobic008G162000--Sobic001G458200 Sobic002G093900 Sobic002G093900 Sobic008G162000--Sobic002G093900 Sobic004G204800 Sobic004G204800 Sobic008G162000--Sobic004G204800 Sobic001G506000--Sobic001G487100 Sobic004G075200 Sobic004G075200 Sobic001G506000--Sobic004G075200 Sobic001G506000--Sobic001G115500 Sobic005G175000 Sobic005G175000 Sobic001G506000--Sobic005G175000 Sobic009G207200 Sobic009G207200 Sobic001G506000--Sobic009G207200 Sobic003G122000 Sobic003G122000 Sobic001G506000--Sobic003G122000 Sobic001G469200 Sobic001G469200 Sobic001G506000--Sobic001G469200 Sobic007G165300 Sobic007G165300 Sobic001G506000--Sobic007G165300 Sobic001G506000--Sobic002G280900 Sobic010G059700 Sobic010G059700 Sobic002G280900--Sobic010G059700 Sobic002G280900--Sobic001G506000 Sobic007G031100 Sobic007G031100 Sobic002G280900--Sobic007G031100 Sobic001G432100 Sobic001G432100 Sobic002G280900--Sobic001G432100 Sobic004G151200 Sobic004G151200 Sobic002G280900--Sobic004G151200 Sobic002G280900--Sobic005G084900 Sobic002G280900--Sobic009G002000 Sobic001G302900 Sobic001G302900 Sobic002G280900--Sobic001G302900 Sobic007G140600 Sobic007G140600 Sobic002G280900--Sobic007G140600 Sobic004G145000 Sobic004G145000 Sobic006G139100--Sobic004G145000 Sobic002G313900 Sobic002G313900 Sobic006G139100--Sobic002G313900 Sobic007G042900 Sobic007G042900 Sobic006G139100--Sobic007G042900 Sobic006G139100--Sobic003G150900 Sobic003G227100 Sobic003G227100 Sobic006G139100--Sobic003G227100 Sobic001G005600 Sobic001G005600 Sobic006G139100--Sobic001G005600 Sobic006G139100--Sobic003G050900 Sobic002G150700 Sobic002G150700 Sobic006G139100--Sobic002G150700 Sobic006G139100--Sobic003G046300 Sobic005G110499 Sobic005G110499 Sobic003G050900--Sobic005G110499 Sobic009G003700 Sobic009G003700 Sobic003G050900--Sobic009G003700 Sobic003G050900--Sobic003G227100 Sobic003G284000 Sobic003G284000 Sobic003G050900--Sobic003G284000 Sobic003G209200 Sobic003G209200 Sobic003G050900--Sobic003G209200 Sobic009G077600 Sobic009G077600 Sobic003G050900--Sobic009G077600 Sobic008G055900 Sobic008G055900 Sobic003G050900--Sobic008G055900 Sobic006G166200 Sobic006G166200 Sobic003G050900--Sobic006G166200 Sobic003G023300 Sobic003G023300 Sobic003G050900--Sobic003G023300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.