Gene annotation
Transcriptome id Sobic.001G322900.1
Synonym Sb01g031320
Functional annotation HIT zinc finger domain containing protein, expressed
UniProt C5WUN1
Pfam PF04925 PF04438
Panther DB PTHR15555 PTHR15555:SF0
NCBI CDD KOG4317; Predicted Zn-finger protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G63830 : HIT-type Zinc finger family protein
RAP-DB (Rice) LOC_Os10g37640.1 : HIT zinc finger domain containing protein, expressed
MaizeGDB (Corn) Zm00025a006441 , Zm00025a003060
Brachypodium KQJ97491 , PNT67736 , PNT67735
Barley -
Wheat TraesCS1A02G182800 , TraesCS1B02G197700 , TraesCS1D02G186300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G219100 protein kinase APK1B, chloroplast precursor, putative, expressed -
2 Sobic.006G257001 - -
3 Sobic.001G404200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17790: mitochondrial import inner membrane translocase subunit TIM22
4 Sobic.004G072800 expressed protein -
5 Sobic.003G023500 syntaxin, putative, expressed K08489: syntaxin 16
6 Sobic.002G413400 ribosomal protein, putative, expressed K14842: ribosome biogenesis protein NSA2
7 Sobic.009G193850 - -
8 Sobic.006G251701 - -
9 Sobic.001G408100 Yip1 domain containing protein, expressed -
10 Sobic.007G162800 expressed protein -
11 Sobic.007G167700 expressed protein -
12 Sobic.002G368400 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17795: mitochondrial import inner membrane translocase subunit TIM17
13 Sobic.001G448200 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
14 Sobic.003G350600 HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
15 Sobic.001G067900 clathrin adaptor complex small chain domain containing protein, expressed K12394: AP-1 complex subunit sigma 1/2
16 Sobic.003G217100 Yip1 domain containing protein, expressed -
17 Sobic.003G405900 mitochondrial import receptor subunit TOM20, putative, expressed -
18 Sobic.004G332000 alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase, putative, expressed K00736: alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
19 Sobic.001G332300 expressed protein -
20 Sobic.001G471000 RNase L inhibitor protein-related, putative, expressed K09140: pre-rRNA-processing protein TSR3


Gene co-expression network
sample Sobic001G322900 Sobic001G322900 Sobic010G219100 Sobic010G219100 Sobic001G322900--Sobic010G219100 Sobic006G257001 Sobic006G257001 Sobic001G322900--Sobic006G257001 Sobic001G404200 Sobic001G404200 Sobic001G322900--Sobic001G404200 Sobic004G072800 Sobic004G072800 Sobic001G322900--Sobic004G072800 Sobic003G023500 Sobic003G023500 Sobic001G322900--Sobic003G023500 Sobic002G413400 Sobic002G413400 Sobic001G322900--Sobic002G413400 Sobic009G193850 Sobic009G193850 Sobic001G322900--Sobic009G193850 Sobic006G251701 Sobic006G251701 Sobic001G322900--Sobic006G251701 Sobic001G408100 Sobic001G408100 Sobic001G322900--Sobic001G408100 Sobic002G272600 Sobic002G272600 Sobic010G219100--Sobic002G272600 Sobic003G247900 Sobic003G247900 Sobic010G219100--Sobic003G247900 Sobic008G137600 Sobic008G137600 Sobic010G219100--Sobic008G137600 Sobic002G129000 Sobic002G129000 Sobic010G219100--Sobic002G129000 Sobic006G183000 Sobic006G183000 Sobic010G219100--Sobic006G183000 Sobic010G219100--Sobic006G257001 Sobic010G193800 Sobic010G193800 Sobic010G219100--Sobic010G193800 Sobic001G152000 Sobic001G152000 Sobic010G219100--Sobic001G152000 Sobic009G050700 Sobic009G050700 Sobic010G219100--Sobic009G050700 Sobic001G067900 Sobic001G067900 Sobic006G257001--Sobic001G067900 Sobic006G034800 Sobic006G034800 Sobic006G257001--Sobic006G034800 Sobic001G105100 Sobic001G105100 Sobic006G257001--Sobic001G105100 Sobic001G237500 Sobic001G237500 Sobic006G257001--Sobic001G237500 Sobic001G041200 Sobic001G041200 Sobic006G257001--Sobic001G041200 Sobic002G131900 Sobic002G131900 Sobic006G257001--Sobic002G131900 Sobic010G105600 Sobic010G105600 Sobic006G257001--Sobic010G105600 Sobic003G217100 Sobic003G217100 Sobic006G257001--Sobic003G217100 Sobic002G301300 Sobic002G301300 Sobic006G257001--Sobic002G301300 Sobic006G094600 Sobic006G094600 Sobic001G404200--Sobic006G094600 Sobic001G332300 Sobic001G332300 Sobic001G404200--Sobic001G332300 Sobic007G118000 Sobic007G118000 Sobic001G404200--Sobic007G118000 Sobic003G374000 Sobic003G374000 Sobic001G404200--Sobic003G374000 Sobic005G184200 Sobic005G184200 Sobic001G404200--Sobic005G184200 Sobic008G110500 Sobic008G110500 Sobic001G404200--Sobic008G110500 Sobic007G014900 Sobic007G014900 Sobic001G404200--Sobic007G014900 Sobic003G148900 Sobic003G148900 Sobic001G404200--Sobic003G148900 Sobic008G145100 Sobic008G145100 Sobic001G404200--Sobic008G145100 Sobic004G072800--Sobic001G067900 Sobic003G350600 Sobic003G350600 Sobic004G072800--Sobic003G350600 Sobic003G007500 Sobic003G007500 Sobic004G072800--Sobic003G007500 Sobic002G313500 Sobic002G313500 Sobic004G072800--Sobic002G313500 Sobic004G072800--Sobic007G118000 Sobic001G522900 Sobic001G522900 Sobic004G072800--Sobic001G522900 Sobic002G281300 Sobic002G281300 Sobic004G072800--Sobic002G281300 Sobic001G429400 Sobic001G429400 Sobic004G072800--Sobic001G429400 Sobic003G045400 Sobic003G045400 Sobic004G072800--Sobic003G045400 Sobic004G222600 Sobic004G222600 Sobic003G023500--Sobic004G222600 Sobic003G023500--Sobic003G217100 Sobic002G214900 Sobic002G214900 Sobic003G023500--Sobic002G214900 Sobic001G214200 Sobic001G214200 Sobic003G023500--Sobic001G214200 Sobic001G409900 Sobic001G409900 Sobic003G023500--Sobic001G409900 Sobic009G191600 Sobic009G191600 Sobic003G023500--Sobic009G191600 Sobic006G222400 Sobic006G222400 Sobic003G023500--Sobic006G222400 Sobic004G054300 Sobic004G054300 Sobic003G023500--Sobic004G054300 Sobic002G376500 Sobic002G376500 Sobic003G023500--Sobic002G376500 Sobic001G402300 Sobic001G402300 Sobic002G413400--Sobic001G402300 Sobic009G232000 Sobic009G232000 Sobic002G413400--Sobic009G232000 Sobic009G008600 Sobic009G008600 Sobic002G413400--Sobic009G008600 Sobic010G100000 Sobic010G100000 Sobic002G413400--Sobic010G100000 Sobic002G413400--Sobic006G222400 Sobic003G424800 Sobic003G424800 Sobic002G413400--Sobic003G424800 Sobic001G126200 Sobic001G126200 Sobic002G413400--Sobic001G126200 Sobic001G513500 Sobic001G513500 Sobic002G413400--Sobic001G513500 Sobic008G130400 Sobic008G130400 Sobic002G413400--Sobic008G130400 Sobic009G193850--Sobic001G041200 Sobic004G011000 Sobic004G011000 Sobic009G193850--Sobic004G011000 Sobic006G216000 Sobic006G216000 Sobic009G193850--Sobic006G216000 Sobic007G162800 Sobic007G162800 Sobic009G193850--Sobic007G162800 Sobic002G148300 Sobic002G148300 Sobic009G193850--Sobic002G148300 Sobic009G193850--Sobic001G404200 Sobic003G118400 Sobic003G118400 Sobic009G193850--Sobic003G118400 Sobic008G080000 Sobic008G080000 Sobic009G193850--Sobic008G080000 Sobic006G242300 Sobic006G242300 Sobic009G193850--Sobic006G242300 Sobic001G309500 Sobic001G309500 Sobic006G251701--Sobic001G309500 Sobic002G090700 Sobic002G090700 Sobic006G251701--Sobic002G090700 Sobic004G159000 Sobic004G159000 Sobic006G251701--Sobic004G159000 Sobic003G405900 Sobic003G405900 Sobic006G251701--Sobic003G405900 Sobic004G286100 Sobic004G286100 Sobic006G251701--Sobic004G286100 Sobic002G368400 Sobic002G368400 Sobic006G251701--Sobic002G368400 Sobic010G042800 Sobic010G042800 Sobic006G251701--Sobic010G042800 Sobic008G175100 Sobic008G175100 Sobic006G251701--Sobic008G175100 Sobic006G220700 Sobic006G220700 Sobic006G251701--Sobic006G220700 Sobic001G408100--Sobic003G217100 Sobic003G052400 Sobic003G052400 Sobic001G408100--Sobic003G052400 Sobic009G171100 Sobic009G171100 Sobic001G408100--Sobic009G171100 Sobic010G017000 Sobic010G017000 Sobic001G408100--Sobic010G017000 Sobic003G043400 Sobic003G043400 Sobic001G408100--Sobic003G043400 Sobic001G408100--Sobic006G222400 Sobic001G408100--Sobic001G214200 Sobic004G025300 Sobic004G025300 Sobic001G408100--Sobic004G025300 Sobic003G038600 Sobic003G038600 Sobic001G408100--Sobic003G038600
Octagon: transcription factors


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