Gene annotation
| Transcriptome id | Sobic.001G362601.1 |
|---|---|
| Synonym | - |
| Functional annotation | - |
| UniProt | A0A1Z5S9D9 |
| Pfam | PF07690 |
| Panther DB | PTHR23500 PTHR23500:SF26 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0016021; integral component of membrane |
Orthologs (automatic annotation)
| TAIR | AT2G48020 : Major facilitator superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os03g24860.1 : transporter family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a002583 |
| Brachypodium | PNT77372 , PNT77373 , PNT77371 , PNT77374 , PNT77375 , KQK21590 , KQK21587 , KQK21589 , KQK21588 |
| Barley | HORVU6Hr1G080420.21 , HORVU6Hr1G080420.20 , HORVU6Hr1G080420.23 , HORVU6Hr1G080420.22 , HORVU6Hr1G080420.25 , HORVU6Hr1G080420.24 , HORVU6Hr1G080420.27 , HORVU6Hr1G080420.26 , HORVU6Hr1G080420.29 , HORVU6Hr1G080420.28 , HORVU6Hr1G080420.32 , HORVU6Hr1G080420.33 , HORVU6Hr1G080420.30 , HORVU6Hr1G080420.31 , HORVU6Hr1G080420.6 , HORVU6Hr1G080420.7 , HORVU6Hr1G080420.4 , HORVU6Hr1G080420.5 , HORVU6Hr1G080420.2 , HORVU6Hr1G080420.3 , HORVU6Hr1G080420.8 , HORVU6Hr1G080420.18 , HORVU6Hr1G080420.14 , HORVU6Hr1G080420.16 , HORVU6Hr1G080420.17 , HORVU6Hr1G080420.11 , HORVU6Hr1G080420.13 |
| Wheat | TraesCS6D02G310900 , TraesCS6B02G362400 , TraesCS6A02G331600 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G165700 | expressed protein | - |
| 2 | Sobic.009G004100 | -(PubMedID : 26976818)@uncharacterized kinase mug58, putative, expressed | K15918: D-glycerate 3-kinase |
| 3 | Sobic.010G056300 | PPR repeat domain containing protein, putative, expressed | - |
| 4 | Sobic.001G220000 | PPR repeat containing protein, expressed | - |
| 5 | Sobic.003G408000 | ribosomal protein L27, putative, expressed | K02899: RP-L27, MRPL27, large subunit ribosomal protein L27 |
| 6 | Sobic.004G124400 | uncharacterized conserved membrane protein specific to cyanobacteria, putative, expressed | - |
| 7 | Sobic.009G231800 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf"(PubMedID : 20499123)@auxin response factor 15, putative, expressed | K14486: K14486, auxin response factor |
| 8 | Sobic.007G162600 | uncharacterized protein all1601, putative, expressed | K18010: 7-hydroxymethyl chlorophyll a reductase |
| 9 | Sobic.010G042400 | -(PubMedID : 26465154)@expressed protein | - |
| 10 | Sobic.007G124500 | methyltransferase, putative, expressed | - |
| 11 | Sobic.001G029600 | -(PubMedID : 26465154)@expressed protein | - |
| 12 | Sobic.004G154800 | expressed protein | - |
| 13 | Sobic.004G040100 | B-box (BBX) protein(PubMedID : 30626335)@CCT motif family protein, expressed | - |
| 14 | Sobic.002G061900 | peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed | - |
| 15 | Sobic.001G167900 | oxidoreductase, aldo/keto reductase family protein, putative, expressed | - |
| 16 | Sobic.009G133700 | expressed protein | - |
| 17 | Sobic.001G535700 | stress responsive A/B Barrel domain containing protein, expressed | - |
| 18 | Sobic.007G166300 | PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed | K00051: malate dehydrogenase (NADP+) |
| 19 | Sobic.005G028800 | astaxanthin synthase KC28, putative, expressed | - |
| 20 | Sobic.003G058700 | 5-azacytidine resistance protein azr1, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
