Gene annotation
Transcriptome id Sobic.001G405800.1
Synonym TMS1, ATERDJ3A, Sb01g038380
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
heat shock protein DnaJ, putative, expressed
UniProt H0I4E9 , A0A1B6QQB1
Pfam PF00226
Panther DB PTHR24078:SF260 PTHR24078
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G08970 : DNAJ heat shock N-terminal domain-containing protein
RAP-DB (Rice) LOC_Os03g18200.1 : heat shock protein DnaJ, putative, expressed
MaizeGDB (Corn) Zm00025a052648 , Zm00025a049891
Brachypodium KQK22151
Barley HORVU4Hr1G056070.9 , HORVU4Hr1G056070.4 , HORVU4Hr1G056070.5 , HORVU4Hr1G056070.7 , HORVU4Hr1G056070.1 , HORVU4Hr1G056070.3 , HORVU4Hr1G056070.6 , HORVU4Hr1G056070.2 , HORVU4Hr1G056070.16 , HORVU4Hr1G056070.14 , HORVU4Hr1G056070.15 , HORVU4Hr1G056070.12 , HORVU4Hr1G056070.13 , HORVU4Hr1G056070.10 , HORVU4Hr1G056070.11
Wheat -
Populus PNS99198


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cDNA sequences
Sobic.001G405800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G336000 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed K15633: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
2 Sobic.003G395900 transmembrane amino acid transporter protein, putative, expressed -
3 Sobic.001G064500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chaperone protein dnaJ, putative, expressed K09503: DnaJ homolog subfamily A member 2
4 Sobic.001G406100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K15100: SLC25A1, solute carrier family 25 (mitochondrial citrate transporter), member 1
5 Sobic.009G020700 expressed protein -
6 Sobic.003G380600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrion protein, putative, expressed -
7 Sobic.002G294500 OsRCI2-11 - Hydrophobic protein OSR8, expressed -
8 Sobic.003G389700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.002G214400 choline/ethanolamine kinase, putative, expressed K00894: ETNK, ethanolamine kinase
10 Sobic.001G446200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@clathrin adaptor complex small chain domain containing protein, expressed K12399: AP-3 complex subunit sigma
11 Sobic.003G308400 expressed protein -
12 Sobic.002G306900 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
13 Sobic.010G007300 hydrolase activity(PubMedID : 24655390)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase activity(PubMedID : 24655390)@haloacid dehalogenase-like hydrolase family protein, putative, expressed -
14 Sobic.007G122200 expressed protein -
15 Sobic.003G243600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
16 Sobic.001G301800 CS domain containing protein, putative, expressed -
17 Sobic.010G027000 enolase, putative, expressed K01689: ENO, enolase
18 Sobic.003G238000 ras-related protein, putative, expressed K07936: GTP-binding nuclear protein Ran
19 Sobic.002G355300 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
20 Sobic.004G058200 cytidylyltransferase domain containing protein, expressed K00968: choline-phosphate cytidylyltransferase


Gene co-expression network
sample Sobic001G405800 Sobic001G405800 Sobic003G336000 Sobic003G336000 Sobic001G405800--Sobic003G336000 Sobic003G395900 Sobic003G395900 Sobic001G405800--Sobic003G395900 Sobic001G064500 Sobic001G064500 Sobic001G405800--Sobic001G064500 Sobic001G406100 Sobic001G406100 Sobic001G405800--Sobic001G406100 Sobic009G020700 Sobic009G020700 Sobic001G405800--Sobic009G020700 Sobic003G380600 Sobic003G380600 Sobic001G405800--Sobic003G380600 Sobic002G294500 Sobic002G294500 Sobic001G405800--Sobic002G294500 Sobic003G389700 Sobic003G389700 Sobic001G405800--Sobic003G389700 Sobic002G214400 Sobic002G214400 Sobic001G405800--Sobic002G214400 Sobic010G027000 Sobic010G027000 Sobic003G336000--Sobic010G027000 Sobic002G355300 Sobic002G355300 Sobic003G336000--Sobic002G355300 Sobic001G503500 Sobic001G503500 Sobic003G336000--Sobic001G503500 Sobic009G217900 Sobic009G217900 Sobic003G336000--Sobic009G217900 Sobic004G058200 Sobic004G058200 Sobic003G336000--Sobic004G058200 Sobic010G026925 Sobic010G026925 Sobic003G336000--Sobic010G026925 Sobic007G114200 Sobic007G114200 Sobic003G336000--Sobic007G114200 Sobic004G352500 Sobic004G352500 Sobic003G336000--Sobic004G352500 Sobic001G301800 Sobic001G301800 Sobic003G336000--Sobic001G301800 Sobic003G395900--Sobic003G389700 Sobic004G255600 Sobic004G255600 Sobic003G395900--Sobic004G255600 Sobic006G008700 Sobic006G008700 Sobic003G395900--Sobic006G008700 Sobic009G140800 Sobic009G140800 Sobic003G395900--Sobic009G140800 Sobic006G130300 Sobic006G130300 Sobic003G395900--Sobic006G130300 Sobic001G111700 Sobic001G111700 Sobic003G395900--Sobic001G111700 Sobic004G283100 Sobic004G283100 Sobic003G395900--Sobic004G283100 Sobic002G086800 Sobic002G086800 Sobic003G395900--Sobic002G086800 Sobic001G329400 Sobic001G329400 Sobic003G395900--Sobic001G329400 Sobic001G482100 Sobic001G482100 Sobic001G064500--Sobic001G482100 Sobic007G216300 Sobic007G216300 Sobic001G064500--Sobic007G216300 Sobic004G249900 Sobic004G249900 Sobic001G064500--Sobic004G249900 Sobic001G420100 Sobic001G420100 Sobic001G064500--Sobic001G420100 Sobic010G052800 Sobic010G052800 Sobic001G064500--Sobic010G052800 Sobic004G020000 Sobic004G020000 Sobic001G064500--Sobic004G020000 Sobic003G130800 Sobic003G130800 Sobic001G064500--Sobic003G130800 Sobic003G136000 Sobic003G136000 Sobic001G064500--Sobic003G136000 Sobic003G310700 Sobic003G310700 Sobic001G064500--Sobic003G310700 Sobic001G070000 Sobic001G070000 Sobic001G406100--Sobic001G070000 Sobic010G074300 Sobic010G074300 Sobic001G406100--Sobic010G074300 Sobic008G047400 Sobic008G047400 Sobic001G406100--Sobic008G047400 Sobic002G358400 Sobic002G358400 Sobic001G406100--Sobic002G358400 Sobic004G103000 Sobic004G103000 Sobic001G406100--Sobic004G103000 Sobic008G187100 Sobic008G187100 Sobic001G406100--Sobic008G187100 Sobic004G070700 Sobic004G070700 Sobic001G406100--Sobic004G070700 Sobic002G204200 Sobic002G204200 Sobic001G406100--Sobic002G204200 Sobic009G207300 Sobic009G207300 Sobic001G406100--Sobic009G207300 Sobic009G020700--Sobic003G336000 Sobic007G197200 Sobic007G197200 Sobic009G020700--Sobic007G197200 Sobic009G020700--Sobic004G058200 Sobic009G020700--Sobic001G301800 Sobic002G431100 Sobic002G431100 Sobic009G020700--Sobic002G431100 Sobic009G020700--Sobic010G026925 Sobic009G020700--Sobic002G355300 Sobic006G276700 Sobic006G276700 Sobic009G020700--Sobic006G276700 Sobic009G017800 Sobic009G017800 Sobic009G020700--Sobic009G017800 Sobic007G033800 Sobic007G033800 Sobic003G380600--Sobic007G033800 Sobic004G203400 Sobic004G203400 Sobic003G380600--Sobic004G203400 Sobic004G343500 Sobic004G343500 Sobic003G380600--Sobic004G343500 Sobic009G054900 Sobic009G054900 Sobic003G380600--Sobic009G054900 Sobic001G239500 Sobic001G239500 Sobic003G380600--Sobic001G239500 Sobic001G020100 Sobic001G020100 Sobic003G380600--Sobic001G020100 Sobic001G386300 Sobic001G386300 Sobic003G380600--Sobic001G386300 Sobic003G380600--Sobic009G017800 Sobic003G380600--Sobic009G140800 Sobic002G294500--Sobic002G214400 Sobic001G031100 Sobic001G031100 Sobic002G294500--Sobic001G031100 Sobic003G341400 Sobic003G341400 Sobic002G294500--Sobic003G341400 Sobic003G369900 Sobic003G369900 Sobic002G294500--Sobic003G369900 Sobic001G541100 Sobic001G541100 Sobic002G294500--Sobic001G541100 Sobic002G294500--Sobic001G386300 Sobic010G240900 Sobic010G240900 Sobic002G294500--Sobic010G240900 Sobic002G294500--Sobic007G033800 Sobic009G205200 Sobic009G205200 Sobic002G294500--Sobic009G205200 Sobic008G149000 Sobic008G149000 Sobic003G389700--Sobic008G149000 Sobic003G389700--Sobic003G395900 Sobic005G110502 Sobic005G110502 Sobic003G389700--Sobic005G110502 Sobic003G235500 Sobic003G235500 Sobic003G389700--Sobic003G235500 Sobic001G470900 Sobic001G470900 Sobic003G389700--Sobic001G470900 Sobic004G219400 Sobic004G219400 Sobic003G389700--Sobic004G219400 Sobic002G394400 Sobic002G394400 Sobic003G389700--Sobic002G394400 Sobic009G222200 Sobic009G222200 Sobic003G389700--Sobic009G222200 Sobic003G389700--Sobic001G111700 Sobic002G214400--Sobic002G294500 Sobic001G313500 Sobic001G313500 Sobic002G214400--Sobic001G313500 Sobic001G312500 Sobic001G312500 Sobic002G214400--Sobic001G312500 Sobic004G003401 Sobic004G003401 Sobic002G214400--Sobic004G003401 Sobic002G214400--Sobic001G541100 Sobic001G105500 Sobic001G105500 Sobic002G214400--Sobic001G105500 Sobic004G228800 Sobic004G228800 Sobic002G214400--Sobic004G228800 Sobic010G235200 Sobic010G235200 Sobic002G214400--Sobic010G235200 Sobic003G105101 Sobic003G105101 Sobic002G214400--Sobic003G105101
Octagon: transcription factors


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