Gene annotation
Transcriptome id Sobic.001G445100.3,Sobic.001G445100.2,Sobic.001G445100.1
Synonym Sb01g041830
Functional annotation expressed protein
UniProt C5WRP1 , A0A1Z5SAK8 , A0A1Z5SAR9
Pfam -
Panther DB PTHR16897 PTHR16897:SF3 PTHR16897:SF3 PTHR16897
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G58050 : -
RAP-DB (Rice) LOC_Os10g01610.1 : expressed protein
MaizeGDB (Corn) Zm00025a052963 , Zm00025a001451 , Zm00025a003637
Brachypodium KQK22714 , KQJ96180
Barley HORVU4Hr1G065170.4 , HORVU4Hr1G065170.3 , HORVU4Hr1G065170.2 , HORVU4Hr1G065170.1
Wheat TraesCS4B02G233400 , TraesCS4D02G234500 , TraesCS4A02G077200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G222500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
2 Sobic.001G383300 ABC transporter, ATP-binding protein, putative, expressed K05663: ATP-binding cassette, subfamily B, mitochondrial transporter ATM
3 Sobic.001G413500 expressed protein -
4 Sobic.001G497300 protein kinase domain containing protein, expressed -
5 Sobic.008G103200 OsPOP1 - Putative Prolyl Oligopeptidase homologue, expressed K01322: prolyl oligopeptidase
6 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
7 Sobic.007G217000 tetratricopeptide repeat domain containing protein, expressed K13342: PEX5, peroxin-5
8 Sobic.002G315200 DNA-binding bromodomain-containing protein, putative, expressed -
9 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
10 Sobic.002G399100 zinc finger, RING-type, putative, expressed K15688: E3 ubiquitin-protein ligase MUL1
11 Sobic.010G069100 expressed protein -
12 Sobic.001G155000 DNA-directed RNA polymerase II subunit RPB2, putative, expressed K03010: RPB2, DNA-directed RNA polymerase II subunit RPB2
13 Sobic.008G063000 transcriptional corepressor SEUSS, putative, expressed -
14 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
15 Sobic.009G083900 C-5 cytosine-specific DNA methylase, putative, expressed K00558: DNMT1, DNA (cytosine-5)-methyltransferase 1
16 Sobic.003G200200 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
17 Sobic.009G170400 ribonuclease P family protein("PubMedID : 26759170,PubMedID : 24597475")@ribonuclease P family protein, putative, expressed K03538: POP4, ribonuclease P protein subunit POP4
18 Sobic.008G173900 "OsPPKL3(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659913)@serine/threonine-protein phosphatase BSL2, putative, expressed -
19 Sobic.008G009700 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
20 Sobic.001G125200 HEAT repeat family protein, putative, expressed -


Gene co-expression network
sample Sobic001G445100 Sobic001G445100 Sobic001G222500 Sobic001G222500 Sobic001G445100--Sobic001G222500 Sobic001G383300 Sobic001G383300 Sobic001G445100--Sobic001G383300 Sobic001G413500 Sobic001G413500 Sobic001G445100--Sobic001G413500 Sobic001G497300 Sobic001G497300 Sobic001G445100--Sobic001G497300 Sobic008G103200 Sobic008G103200 Sobic001G445100--Sobic008G103200 Sobic002G006900 Sobic002G006900 Sobic001G445100--Sobic002G006900 Sobic007G217000 Sobic007G217000 Sobic001G445100--Sobic007G217000 Sobic002G315200 Sobic002G315200 Sobic001G445100--Sobic002G315200 Sobic002G309600 Sobic002G309600 Sobic001G445100--Sobic002G309600 Sobic004G084300 Sobic004G084300 Sobic001G222500--Sobic004G084300 Sobic008G047800 Sobic008G047800 Sobic001G222500--Sobic008G047800 Sobic001G155000 Sobic001G155000 Sobic001G222500--Sobic001G155000 Sobic002G310200 Sobic002G310200 Sobic001G222500--Sobic002G310200 Sobic009G126400 Sobic009G126400 Sobic001G222500--Sobic009G126400 Sobic009G040600 Sobic009G040600 Sobic001G222500--Sobic009G040600 Sobic001G222500--Sobic002G006900 Sobic003G052200 Sobic003G052200 Sobic001G222500--Sobic003G052200 Sobic007G096000 Sobic007G096000 Sobic001G222500--Sobic007G096000 Sobic001G383300--Sobic008G047800 Sobic001G383300--Sobic004G084300 Sobic001G383300--Sobic001G222500 Sobic010G032900 Sobic010G032900 Sobic001G383300--Sobic010G032900 Sobic001G383300--Sobic009G040600 Sobic003G141500 Sobic003G141500 Sobic001G383300--Sobic003G141500 Sobic001G383300--Sobic008G103200 Sobic001G392300 Sobic001G392300 Sobic001G383300--Sobic001G392300 Sobic003G164200 Sobic003G164200 Sobic001G383300--Sobic003G164200 Sobic009G083900 Sobic009G083900 Sobic001G413500--Sobic009G083900 Sobic008G173900 Sobic008G173900 Sobic001G413500--Sobic008G173900 Sobic002G157000 Sobic002G157000 Sobic001G413500--Sobic002G157000 Sobic004G240800 Sobic004G240800 Sobic001G413500--Sobic004G240800 Sobic001G413500--Sobic001G497300 Sobic005G023900 Sobic005G023900 Sobic001G413500--Sobic005G023900 Sobic003G200200 Sobic003G200200 Sobic001G413500--Sobic003G200200 Sobic004G145500 Sobic004G145500 Sobic001G413500--Sobic004G145500 Sobic003G268300 Sobic003G268300 Sobic001G413500--Sobic003G268300 Sobic007G104800 Sobic007G104800 Sobic001G497300--Sobic007G104800 Sobic001G512700 Sobic001G512700 Sobic001G497300--Sobic001G512700 Sobic001G497300--Sobic002G006900 Sobic006G237400 Sobic006G237400 Sobic001G497300--Sobic006G237400 Sobic004G205600 Sobic004G205600 Sobic001G497300--Sobic004G205600 Sobic001G497300--Sobic001G413500 Sobic001G497300--Sobic008G047800 Sobic001G497300--Sobic005G023900 Sobic001G497300--Sobic002G157000 Sobic008G103200--Sobic008G047800 Sobic003G266001 Sobic003G266001 Sobic008G103200--Sobic003G266001 Sobic004G065100 Sobic004G065100 Sobic008G103200--Sobic004G065100 Sobic008G103200--Sobic001G222500 Sobic010G069100 Sobic010G069100 Sobic008G103200--Sobic010G069100 Sobic008G103200--Sobic002G310200 Sobic008G103200--Sobic004G084300 Sobic001G154900 Sobic001G154900 Sobic008G103200--Sobic001G154900 Sobic004G072100 Sobic004G072100 Sobic008G103200--Sobic004G072100 Sobic002G006900--Sobic008G047800 Sobic007G065400 Sobic007G065400 Sobic002G006900--Sobic007G065400 Sobic002G006900--Sobic003G200200 Sobic003G372700 Sobic003G372700 Sobic002G006900--Sobic003G372700 Sobic002G006900--Sobic009G040600 Sobic002G006900--Sobic001G155000 Sobic002G006900--Sobic002G309600 Sobic001G214300 Sobic001G214300 Sobic002G006900--Sobic001G214300 Sobic002G006900--Sobic001G512700 Sobic001G114000 Sobic001G114000 Sobic007G217000--Sobic001G114000 Sobic007G217000--Sobic008G047800 Sobic009G166300 Sobic009G166300 Sobic007G217000--Sobic009G166300 Sobic007G217000--Sobic001G155000 Sobic001G474600 Sobic001G474600 Sobic007G217000--Sobic001G474600 Sobic007G011300 Sobic007G011300 Sobic007G217000--Sobic007G011300 Sobic007G118600 Sobic007G118600 Sobic007G217000--Sobic007G118600 Sobic007G217000--Sobic002G310200 Sobic004G067700 Sobic004G067700 Sobic007G217000--Sobic004G067700 Sobic010G153700 Sobic010G153700 Sobic002G315200--Sobic010G153700 Sobic002G315200--Sobic002G006900 Sobic001G071400 Sobic001G071400 Sobic002G315200--Sobic001G071400 Sobic002G315200--Sobic008G047800 Sobic001G220300 Sobic001G220300 Sobic002G315200--Sobic001G220300 Sobic002G315200--Sobic001G512700 Sobic009G191000 Sobic009G191000 Sobic002G315200--Sobic009G191000 Sobic001G290100 Sobic001G290100 Sobic002G315200--Sobic001G290100 Sobic002G315200--Sobic001G497300 Sobic003G280800 Sobic003G280800 Sobic002G309600--Sobic003G280800 Sobic002G134200 Sobic002G134200 Sobic002G309600--Sobic002G134200 Sobic007G117400 Sobic007G117400 Sobic002G309600--Sobic007G117400 Sobic008G009700 Sobic008G009700 Sobic002G309600--Sobic008G009700 Sobic002G309600--Sobic001G071400 Sobic005G112300 Sobic005G112300 Sobic002G309600--Sobic005G112300 Sobic002G309600--Sobic004G065100 Sobic002G309600--Sobic001G154900 Sobic002G309600--Sobic002G006900
Octagon: transcription factors


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