Gene annotation
Transcriptome id Sobic.001G453800.1
Synonym CSD3, Sb01g042660
Functional annotation copper/zinc superoxide dismutase, putative, expressed
UniProt C5WSP7
Pfam PF00080
Panther DB PTHR10003 PTHR10003:SF31
NCBI CDD KOG0441; Cu2+/Zn2+ superoxide dismutase SOD1
KEGG Orthology K04565; superoxide dismutase, Cu-Zn family
Gene Ontology GO:0006801; superoxide metabolic process


Orthologs (automatic annotation)
TAIR AT5G18100 : copper/zinc superoxide dismutase 3
RAP-DB (Rice) LOC_Os03g11960.1 : copper/zinc superoxide dismutase, putative, expressed
MaizeGDB (Corn) Zm00025a001333
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G453800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G524300 diacylglycerol kinase, putative, expressed -
2 Sobic.001G346600 kinesin heavy chain isolog, putative, expressed -
3 Sobic.001G465300 splicing factor, putative, expressed -
4 Sobic.001G370500 expressed protein K14851: RRP17, ribosomal RNA-processing protein 17
5 Sobic.010G047000 transport protein particle component, Bet3, domain containing protein, expressed -
6 Sobic.002G279800 M phase phosphoprotein 10, putative, expressed K14559: U3 small nucleolar RNA-associated protein MPP10
7 Sobic.002G088100 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17778: mitochondrial import inner membrane translocase subunit TIM10
8 Sobic.001G503900 MT-A70 domain containing protein, expressed -
9 Sobic.004G064300 HD domain containing protein 2, putative, expressed K07023: putative hydrolases of HD superfamily
10 Sobic.006G111700 agmatine deiminase, putative, expressed K10536: agmatine deiminase
11 Sobic.005G117300 ABC transporter, ATP-binding protein, putative, expressed -
12 Sobic.004G358500 PRLI-interacting factor A, putative, expressed -
13 Sobic.003G138900 aminotransferase, putative, expressed -
14 Sobic.006G120200 Rf1, mitochondrial precursor, putative, expressed -
15 Sobic.003G075800 expressed protein -
16 Sobic.009G130500 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed K01814: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
17 Sobic.010G188800 EF hand family protein, putative, expressed K13448: calcium-binding protein CML
18 Sobic.002G009800 VIP4, putative, expressed K15177: RNA polymerase-associated protein LEO1
19 Sobic.004G065300 CR084 protein, putative, expressed -
20 Sobic.001G217600 mitochondrial import inner membrane translocase subunit Tim16, putative, expressed K17805: PAM16, mitochondrial import inner membrane translocase subunit TIM16


Gene co-expression network
sample Sobic001G453800 Sobic001G453800 Sobic001G524300 Sobic001G524300 Sobic001G453800--Sobic001G524300 Sobic001G346600 Sobic001G346600 Sobic001G453800--Sobic001G346600 Sobic001G465300 Sobic001G465300 Sobic001G453800--Sobic001G465300 Sobic001G370500 Sobic001G370500 Sobic001G453800--Sobic001G370500 Sobic010G047000 Sobic010G047000 Sobic001G453800--Sobic010G047000 Sobic002G279800 Sobic002G279800 Sobic001G453800--Sobic002G279800 Sobic002G088100 Sobic002G088100 Sobic001G453800--Sobic002G088100 Sobic001G503900 Sobic001G503900 Sobic001G453800--Sobic001G503900 Sobic004G064300 Sobic004G064300 Sobic001G453800--Sobic004G064300 Sobic006G186600 Sobic006G186600 Sobic001G524300--Sobic006G186600 Sobic009G193500 Sobic009G193500 Sobic001G524300--Sobic009G193500 Sobic002G131500 Sobic002G131500 Sobic001G524300--Sobic002G131500 Sobic004G336000 Sobic004G336000 Sobic001G524300--Sobic004G336000 Sobic004G359100 Sobic004G359100 Sobic001G524300--Sobic004G359100 Sobic005G149400 Sobic005G149400 Sobic001G524300--Sobic005G149400 Sobic005G117300 Sobic005G117300 Sobic001G524300--Sobic005G117300 Sobic007G208300 Sobic007G208300 Sobic001G524300--Sobic007G208300 Sobic009G068300 Sobic009G068300 Sobic001G524300--Sobic009G068300 Sobic001G346600--Sobic005G117300 Sobic004G003900 Sobic004G003900 Sobic001G346600--Sobic004G003900 Sobic009G092900 Sobic009G092900 Sobic001G346600--Sobic009G092900 Sobic001G025800 Sobic001G025800 Sobic001G346600--Sobic001G025800 Sobic008G090900 Sobic008G090900 Sobic001G346600--Sobic008G090900 Sobic009G085200 Sobic009G085200 Sobic001G346600--Sobic009G085200 Sobic002G181132 Sobic002G181132 Sobic001G346600--Sobic002G181132 Sobic006G155100 Sobic006G155100 Sobic001G346600--Sobic006G155100 Sobic001G032200 Sobic001G032200 Sobic001G346600--Sobic001G032200 Sobic003G153700 Sobic003G153700 Sobic001G465300--Sobic003G153700 Sobic002G083800 Sobic002G083800 Sobic001G465300--Sobic002G083800 Sobic010G209000 Sobic010G209000 Sobic001G465300--Sobic010G209000 Sobic004G093500 Sobic004G093500 Sobic001G465300--Sobic004G093500 Sobic003G275600 Sobic003G275600 Sobic001G465300--Sobic003G275600 Sobic007G004000 Sobic007G004000 Sobic001G465300--Sobic007G004000 Sobic002G383300 Sobic002G383300 Sobic001G465300--Sobic002G383300 Sobic006G179800 Sobic006G179800 Sobic001G465300--Sobic006G179800 Sobic001G029400 Sobic001G029400 Sobic001G465300--Sobic001G029400 Sobic004G068200 Sobic004G068200 Sobic001G370500--Sobic004G068200 Sobic004G288100 Sobic004G288100 Sobic001G370500--Sobic004G288100 Sobic010G262800 Sobic010G262800 Sobic001G370500--Sobic010G262800 Sobic001G466600 Sobic001G466600 Sobic001G370500--Sobic001G466600 Sobic001G429800 Sobic001G429800 Sobic001G370500--Sobic001G429800 Sobic001G370500--Sobic001G453800 Sobic001G370500--Sobic002G088100 Sobic008G088812 Sobic008G088812 Sobic001G370500--Sobic008G088812 Sobic002G312800 Sobic002G312800 Sobic001G370500--Sobic002G312800 Sobic010G047000--Sobic001G453800 Sobic002G240400 Sobic002G240400 Sobic010G047000--Sobic002G240400 Sobic010G047000--Sobic002G088100 Sobic009G251600 Sobic009G251600 Sobic010G047000--Sobic009G251600 Sobic009G228500 Sobic009G228500 Sobic010G047000--Sobic009G228500 Sobic003G315000 Sobic003G315000 Sobic010G047000--Sobic003G315000 Sobic002G293400 Sobic002G293400 Sobic010G047000--Sobic002G293400 Sobic004G002500 Sobic004G002500 Sobic010G047000--Sobic004G002500 Sobic010G047000--Sobic004G068200 Sobic003G156500 Sobic003G156500 Sobic002G279800--Sobic003G156500 Sobic004G126000 Sobic004G126000 Sobic002G279800--Sobic004G126000 Sobic001G501400 Sobic001G501400 Sobic002G279800--Sobic001G501400 Sobic002G279800--Sobic001G503900 Sobic003G222000 Sobic003G222000 Sobic002G279800--Sobic003G222000 Sobic006G013100 Sobic006G013100 Sobic002G279800--Sobic006G013100 Sobic009G217200 Sobic009G217200 Sobic002G279800--Sobic009G217200 Sobic001G206500 Sobic001G206500 Sobic002G279800--Sobic001G206500 Sobic002G317100 Sobic002G317100 Sobic002G279800--Sobic002G317100 Sobic002G329700 Sobic002G329700 Sobic002G088100--Sobic002G329700 Sobic003G396800 Sobic003G396800 Sobic002G088100--Sobic003G396800 Sobic004G264700 Sobic004G264700 Sobic002G088100--Sobic004G264700 Sobic001G199800 Sobic001G199800 Sobic002G088100--Sobic001G199800 Sobic002G088100--Sobic004G288100 Sobic002G088100--Sobic001G370500 Sobic007G140600 Sobic007G140600 Sobic002G088100--Sobic007G140600 Sobic009G228600 Sobic009G228600 Sobic002G088100--Sobic009G228600 Sobic008G050700 Sobic008G050700 Sobic002G088100--Sobic008G050700 Sobic008G011000 Sobic008G011000 Sobic001G503900--Sobic008G011000 Sobic001G503900--Sobic003G156500 Sobic002G316600 Sobic002G316600 Sobic001G503900--Sobic002G316600 Sobic003G260400 Sobic003G260400 Sobic001G503900--Sobic003G260400 Sobic008G185800 Sobic008G185800 Sobic001G503900--Sobic008G185800 Sobic010G169600 Sobic010G169600 Sobic001G503900--Sobic010G169600 Sobic006G184900 Sobic006G184900 Sobic001G503900--Sobic006G184900 Sobic010G136200 Sobic010G136200 Sobic001G503900--Sobic010G136200 Sobic002G388500 Sobic002G388500 Sobic001G503900--Sobic002G388500 Sobic001G513800 Sobic001G513800 Sobic004G064300--Sobic001G513800 Sobic004G064300--Sobic005G117300 Sobic008G050400 Sobic008G050400 Sobic004G064300--Sobic008G050400 Sobic004G064300--Sobic001G025800 Sobic009G155600 Sobic009G155600 Sobic004G064300--Sobic009G155600 Sobic002G304100 Sobic002G304100 Sobic004G064300--Sobic002G304100 Sobic004G064300--Sobic007G208300 Sobic008G095400 Sobic008G095400 Sobic004G064300--Sobic008G095400 Sobic001G495200 Sobic001G495200 Sobic004G064300--Sobic001G495200
Octagon: transcription factors


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