Gene annotation
Transcriptome id Sobic.010G047000.1
Synonym Sb10g004090
Functional annotation transport protein particle component, Bet3, domain containing protein, expressed
UniProt C5Z4G5
Pfam PF04051
Panther DB PTHR20902 PTHR20902:SF0
NCBI CDD KOG3315; Transport protein particle (TRAPP) complex subunit
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G58030 : Transport protein particle (TRAPP) component
RAP-DB (Rice) LOC_Os01g51220.1 : transport protein particle component, Bet3, domain containing protein, expressed
MaizeGDB (Corn) Zm00025a041587
Brachypodium KQJ88591
Barley HORVU5Hr1G118860.7 , HORVU5Hr1G118860.6 , HORVU5Hr1G118860.5 , HORVU5Hr1G118860.4 , HORVU5Hr1G118860.3 , HORVU5Hr1G118860.2 , HORVU5Hr1G118860.1 , HORVU5Hr1G118860.8
Wheat TraesCS2B02G273700 , TraesCS2B02G273700 , TraesCS2D02G229400 , TraesCS2A02G223400 , TraesCS5B02G523000 , TraesCS5D02G521800 , TraesCS4A02G350000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G453800 copper/zinc superoxide dismutase, putative, expressed K04565: superoxide dismutase, Cu-Zn family
2 Sobic.002G240400 - -
3 Sobic.002G088100 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17778: mitochondrial import inner membrane translocase subunit TIM10
4 Sobic.009G251600 cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed K02265: cytochrome c oxidase subunit 5b
5 Sobic.009G228500 60S ribosomal protein-related, putative, expressed K14775: UTP30, ribosome biogenesis protein UTP30
6 Sobic.003G315000 homeobox-leucine zipper protein ATHB-54, putative, expressed -
7 Sobic.002G293400 prostatic spermine-binding protein precursor, putative, expressed -
8 Sobic.004G002500 ribosomal protein, putative, expressed K02988: RP-S5, MRPS5, small subunit ribosomal protein S5
9 Sobic.004G068200 bfr-2, putative, expressed -
10 Sobic.006G111700 agmatine deiminase, putative, expressed K10536: agmatine deiminase
11 Sobic.006G233100 immediate-early protein RSP40, putative, expressed -
12 Sobic.007G108100 co-chaperone protein SBA1, putative, expressed -
13 Sobic.010G004900 CWC15 homolog A, putative, expressed K12863: protein CWC15
14 Sobic.010G025100 HORMA domain containing protein, putative, expressed -
15 Sobic.003G038200 PPR repeat containing protein, expressed -
16 Sobic.005G075500 - -
17 Sobic.001G435100 transcription initiation factor IIF, alpha subunit domain containing protein, expressed K03138: TFIIF1, GTF2F1, transcription initiation factor TFIIF subunit alpha
18 Sobic.002G048001 - -
19 Sobic.003G396800 expressed protein K17413: small subunit ribosomal protein S35
20 Sobic.002G329700 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28


Gene co-expression network
sample Sobic010G047000 Sobic010G047000 Sobic001G453800 Sobic001G453800 Sobic010G047000--Sobic001G453800 Sobic002G240400 Sobic002G240400 Sobic010G047000--Sobic002G240400 Sobic002G088100 Sobic002G088100 Sobic010G047000--Sobic002G088100 Sobic009G251600 Sobic009G251600 Sobic010G047000--Sobic009G251600 Sobic009G228500 Sobic009G228500 Sobic010G047000--Sobic009G228500 Sobic003G315000 Sobic003G315000 Sobic010G047000--Sobic003G315000 Sobic002G293400 Sobic002G293400 Sobic010G047000--Sobic002G293400 Sobic004G002500 Sobic004G002500 Sobic010G047000--Sobic004G002500 Sobic004G068200 Sobic004G068200 Sobic010G047000--Sobic004G068200 Sobic001G524300 Sobic001G524300 Sobic001G453800--Sobic001G524300 Sobic001G346600 Sobic001G346600 Sobic001G453800--Sobic001G346600 Sobic001G465300 Sobic001G465300 Sobic001G453800--Sobic001G465300 Sobic001G370500 Sobic001G370500 Sobic001G453800--Sobic001G370500 Sobic001G453800--Sobic010G047000 Sobic002G279800 Sobic002G279800 Sobic001G453800--Sobic002G279800 Sobic001G453800--Sobic002G088100 Sobic001G503900 Sobic001G503900 Sobic001G453800--Sobic001G503900 Sobic004G064300 Sobic004G064300 Sobic001G453800--Sobic004G064300 Sobic002G240400--Sobic002G293400 Sobic003G278633 Sobic003G278633 Sobic002G240400--Sobic003G278633 Sobic001G435100 Sobic001G435100 Sobic002G240400--Sobic001G435100 Sobic002G240400--Sobic003G315000 Sobic008G127250 Sobic008G127250 Sobic002G240400--Sobic008G127250 Sobic002G240400--Sobic009G251600 Sobic003G349000 Sobic003G349000 Sobic002G240400--Sobic003G349000 Sobic003G282700 Sobic003G282700 Sobic002G240400--Sobic003G282700 Sobic002G312800 Sobic002G312800 Sobic002G240400--Sobic002G312800 Sobic002G329700 Sobic002G329700 Sobic002G088100--Sobic002G329700 Sobic003G396800 Sobic003G396800 Sobic002G088100--Sobic003G396800 Sobic004G264700 Sobic004G264700 Sobic002G088100--Sobic004G264700 Sobic001G199800 Sobic001G199800 Sobic002G088100--Sobic001G199800 Sobic004G288100 Sobic004G288100 Sobic002G088100--Sobic004G288100 Sobic002G088100--Sobic001G370500 Sobic007G140600 Sobic007G140600 Sobic002G088100--Sobic007G140600 Sobic009G228600 Sobic009G228600 Sobic002G088100--Sobic009G228600 Sobic008G050700 Sobic008G050700 Sobic002G088100--Sobic008G050700 Sobic009G251600--Sobic003G282700 Sobic010G025100 Sobic010G025100 Sobic009G251600--Sobic010G025100 Sobic007G188200 Sobic007G188200 Sobic009G251600--Sobic007G188200 Sobic010G042700 Sobic010G042700 Sobic009G251600--Sobic010G042700 Sobic001G197100 Sobic001G197100 Sobic009G251600--Sobic001G197100 Sobic009G251600--Sobic002G293400 Sobic003G119100 Sobic003G119100 Sobic009G251600--Sobic003G119100 Sobic009G251600--Sobic002G240400 Sobic010G241600 Sobic010G241600 Sobic009G251600--Sobic010G241600 Sobic007G137350 Sobic007G137350 Sobic009G228500--Sobic007G137350 Sobic006G095400 Sobic006G095400 Sobic009G228500--Sobic006G095400 Sobic006G135000 Sobic006G135000 Sobic009G228500--Sobic006G135000 Sobic007G108100 Sobic007G108100 Sobic009G228500--Sobic007G108100 Sobic001G493400 Sobic001G493400 Sobic009G228500--Sobic001G493400 Sobic004G173100 Sobic004G173100 Sobic009G228500--Sobic004G173100 Sobic004G190600 Sobic004G190600 Sobic009G228500--Sobic004G190600 Sobic010G038800 Sobic010G038800 Sobic009G228500--Sobic010G038800 Sobic009G228500--Sobic004G002500 Sobic006G266850 Sobic006G266850 Sobic003G315000--Sobic006G266850 Sobic006G088450 Sobic006G088450 Sobic003G315000--Sobic006G088450 Sobic002G091500 Sobic002G091500 Sobic003G315000--Sobic002G091500 Sobic005G135300 Sobic005G135300 Sobic003G315000--Sobic005G135300 Sobic005G068400 Sobic005G068400 Sobic003G315000--Sobic005G068400 Sobic008G131601 Sobic008G131601 Sobic003G315000--Sobic008G131601 Sobic002G288500 Sobic002G288500 Sobic003G315000--Sobic002G288500 Sobic002G051500 Sobic002G051500 Sobic003G315000--Sobic002G051500 Sobic002G176800 Sobic002G176800 Sobic003G315000--Sobic002G176800 Sobic001G141700 Sobic001G141700 Sobic002G293400--Sobic001G141700 Sobic002G293400--Sobic002G240400 Sobic001G541500 Sobic001G541500 Sobic002G293400--Sobic001G541500 Sobic002G293400--Sobic004G068200 Sobic002G293400--Sobic003G349000 Sobic002G293400--Sobic003G282700 Sobic002G293400--Sobic010G241600 Sobic010G237800 Sobic010G237800 Sobic002G293400--Sobic010G237800 Sobic009G172100 Sobic009G172100 Sobic002G293400--Sobic009G172100 Sobic001G011000 Sobic001G011000 Sobic004G002500--Sobic001G011000 Sobic010G134100 Sobic010G134100 Sobic004G002500--Sobic010G134100 Sobic004G002500--Sobic001G493400 Sobic004G212100 Sobic004G212100 Sobic004G002500--Sobic004G212100 Sobic002G367800 Sobic002G367800 Sobic004G002500--Sobic002G367800 Sobic001G214900 Sobic001G214900 Sobic004G002500--Sobic001G214900 Sobic003G388900 Sobic003G388900 Sobic004G002500--Sobic003G388900 Sobic004G356300 Sobic004G356300 Sobic004G002500--Sobic004G356300 Sobic004G002500--Sobic003G396800 Sobic004G068200--Sobic001G370500 Sobic004G068200--Sobic002G293400 Sobic004G068200--Sobic003G278633 Sobic009G018100 Sobic009G018100 Sobic004G068200--Sobic009G018100 Sobic004G068200--Sobic003G315000 Sobic006G236900 Sobic006G236900 Sobic004G068200--Sobic006G236900 Sobic004G068200--Sobic009G172100 Sobic001G095566 Sobic001G095566 Sobic004G068200--Sobic001G095566 Sobic005G156201 Sobic005G156201 Sobic004G068200--Sobic005G156201
Octagon: transcription factors


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