Gene annotation
Transcriptome id Sobic.010G188800.1
Synonym Sb10g023890
Functional annotation EF hand family protein, putative, expressed
UniProt C5Z5R5
Pfam PF13499
Panther DB PTHR10891 PTHR10891:SF574
NCBI CDD KOG0027; Calmodulin and related proteins (EF-Hand superfamily)
KEGG Orthology K13448; calcium-binding protein CML
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G26470 : Calcium-binding EF-hand family protein
RAP-DB (Rice) LOC_Os06g40720.1 : EF hand family protein, putative, expressed
MaizeGDB (Corn) Zm00025a051593 , Zm00025a034647
Brachypodium KQJ93883 , KQJ93880 , KQJ93881 , KQK17711 , KQK17712 , KQJ93879
Barley HORVU6Hr1G032960.2 , HORVU7Hr1G090890.7 , HORVU7Hr1G090890.6 , HORVU7Hr1G090890.5 , HORVU7Hr1G090890.4 , HORVU7Hr1G090890.3 , HORVU7Hr1G090890.2 , HORVU7Hr1G090890.1 , HORVU7Hr1G090890.9 , HORVU7Hr1G090890.8 , HORVU6Hr1G032960.6 , HORVU6Hr1G032960.4 , HORVU6Hr1G032960.5 , HORVU6Hr1G032960.1 , HORVU7Hr1G090890.11 , HORVU7Hr1G090890.10
Wheat TraesCS6A02G160600 , TraesCS7B02G284500 , TraesCS7A02G382000 , TraesCS6B02G190700 , TraesCS7D02G378500
Populus PNT60401 , PNT60400 , PNT60402 , PNT60403 , PNT60404 , PNT60405 , PNT60406 , PNT60399


JBrowse

Open New Page


cDNA sequences
Sobic.010G188800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G179100 transmembrane protein, putative, expressed -
2 Sobic.002G294400 protein phosphatase 2C, putative, expressed K17499: PPM1G, protein phosphatase 1G
3 Sobic.004G259000 fimbrin-like protein 2, putative, expressed -
4 Sobic.001G217600 mitochondrial import inner membrane translocase subunit Tim16, putative, expressed K17805: PAM16, mitochondrial import inner membrane translocase subunit TIM16
5 Sobic.007G203400 spermidine synthase-related, putative, expressed -
6 Sobic.007G004000 YL1 nuclear protein C-terminal domain containing protein, expressed K11664: VPS72, TCFL1, vacuolar protein sorting-associated protein 72
7 Sobic.001G409800 OsFBX234 - F-box domain containing protein, expressed -
8 Sobic.002G388500 SART-1 family protein, putative, expressed K11984: SART1, HAF, U4/U6.U5 tri-snRNP-associated protein 1
9 Sobic.001G223300 expressed protein -
10 Sobic.003G247200 pterin-4-alpha-carbinolamine dehydratase, putative, expressed -
11 Sobic.004G117950 - -
12 Sobic.003G206600 glycine-rich protein, putative, expressed -
13 Sobic.006G161000 CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07359: calcium/calmodulin-dependent protein kinase kinase 2
14 Sobic.002G009800 VIP4, putative, expressed K15177: RNA polymerase-associated protein LEO1
15 Sobic.010G182700 ras-related protein, putative, expressed K07936: GTP-binding nuclear protein Ran
16 Sobic.003G107500 expressed protein K10841: ERCC6, CSB, DNA excision repair protein ERCC-6
17 Sobic.006G019300 F-box-like/WD repeat-containing protein TBL1XR1-A, putative, expressed K04508: transducin (beta)-like 1
18 Sobic.006G270100 allantoinase, putative, expressed K01466: allantoinase
19 Sobic.006G101800 synaptonemal complex protein 2, putative, expressed -
20 Sobic.007G039300 ATP-binding region, ATPase-like domain containing protein, expressed -


Gene co-expression network
sample Sobic010G188800 Sobic010G188800 Sobic006G179100 Sobic006G179100 Sobic010G188800--Sobic006G179100 Sobic002G294400 Sobic002G294400 Sobic010G188800--Sobic002G294400 Sobic004G259000 Sobic004G259000 Sobic010G188800--Sobic004G259000 Sobic001G217600 Sobic001G217600 Sobic010G188800--Sobic001G217600 Sobic007G203400 Sobic007G203400 Sobic010G188800--Sobic007G203400 Sobic007G004000 Sobic007G004000 Sobic010G188800--Sobic007G004000 Sobic001G409800 Sobic001G409800 Sobic010G188800--Sobic001G409800 Sobic002G388500 Sobic002G388500 Sobic010G188800--Sobic002G388500 Sobic001G223300 Sobic001G223300 Sobic010G188800--Sobic001G223300 Sobic002G079000 Sobic002G079000 Sobic006G179100--Sobic002G079000 Sobic010G213500 Sobic010G213500 Sobic006G179100--Sobic010G213500 Sobic007G087000 Sobic007G087000 Sobic006G179100--Sobic007G087000 Sobic010G169900 Sobic010G169900 Sobic006G179100--Sobic010G169900 Sobic010G244900 Sobic010G244900 Sobic006G179100--Sobic010G244900 Sobic004G320700 Sobic004G320700 Sobic006G179100--Sobic004G320700 Sobic002G292900 Sobic002G292900 Sobic006G179100--Sobic002G292900 Sobic006G128100 Sobic006G128100 Sobic006G179100--Sobic006G128100 Sobic002G306100 Sobic002G306100 Sobic006G179100--Sobic002G306100 Sobic001G410000 Sobic001G410000 Sobic002G294400--Sobic001G410000 Sobic001G436400 Sobic001G436400 Sobic002G294400--Sobic001G436400 Sobic002G081400 Sobic002G081400 Sobic002G294400--Sobic002G081400 Sobic004G271600 Sobic004G271600 Sobic002G294400--Sobic004G271600 Sobic003G288800 Sobic003G288800 Sobic002G294400--Sobic003G288800 Sobic002G085100 Sobic002G085100 Sobic002G294400--Sobic002G085100 Sobic004G207400 Sobic004G207400 Sobic002G294400--Sobic004G207400 Sobic003G340600 Sobic003G340600 Sobic002G294400--Sobic003G340600 Sobic004G317700 Sobic004G317700 Sobic002G294400--Sobic004G317700 Sobic009G099200 Sobic009G099200 Sobic004G259000--Sobic009G099200 Sobic002G193300 Sobic002G193300 Sobic004G259000--Sobic002G193300 Sobic003G284700 Sobic003G284700 Sobic004G259000--Sobic003G284700 Sobic003G318700 Sobic003G318700 Sobic004G259000--Sobic003G318700 Sobic006G210700 Sobic006G210700 Sobic004G259000--Sobic006G210700 Sobic010G086600 Sobic010G086600 Sobic004G259000--Sobic010G086600 Sobic004G160700 Sobic004G160700 Sobic004G259000--Sobic004G160700 Sobic009G208100 Sobic009G208100 Sobic004G259000--Sobic009G208100 Sobic004G259000--Sobic002G292900 Sobic004G093500 Sobic004G093500 Sobic001G217600--Sobic004G093500 Sobic001G217600--Sobic010G188800 Sobic010G025850 Sobic010G025850 Sobic001G217600--Sobic010G025850 Sobic010G014100 Sobic010G014100 Sobic001G217600--Sobic010G014100 Sobic002G268800 Sobic002G268800 Sobic001G217600--Sobic002G268800 Sobic004G088501 Sobic004G088501 Sobic001G217600--Sobic004G088501 Sobic007G213000 Sobic007G213000 Sobic001G217600--Sobic007G213000 Sobic005G087900 Sobic005G087900 Sobic001G217600--Sobic005G087900 Sobic008G185800 Sobic008G185800 Sobic001G217600--Sobic008G185800 Sobic001G503900 Sobic001G503900 Sobic007G203400--Sobic001G503900 Sobic008G040100 Sobic008G040100 Sobic007G203400--Sobic008G040100 Sobic002G278000 Sobic002G278000 Sobic007G203400--Sobic002G278000 Sobic002G404700 Sobic002G404700 Sobic007G203400--Sobic002G404700 Sobic003G401600 Sobic003G401600 Sobic007G203400--Sobic003G401600 Sobic001G480100 Sobic001G480100 Sobic007G203400--Sobic001G480100 Sobic003G039900 Sobic003G039900 Sobic007G203400--Sobic003G039900 Sobic007G203400--Sobic001G409800 Sobic003G444800 Sobic003G444800 Sobic007G203400--Sobic003G444800 Sobic004G049700 Sobic004G049700 Sobic007G004000--Sobic004G049700 Sobic002G127100 Sobic002G127100 Sobic007G004000--Sobic002G127100 Sobic006G161000 Sobic006G161000 Sobic007G004000--Sobic006G161000 Sobic007G004000--Sobic002G388500 Sobic007G009700 Sobic007G009700 Sobic007G004000--Sobic007G009700 Sobic007G168300 Sobic007G168300 Sobic007G004000--Sobic007G168300 Sobic006G251900 Sobic006G251900 Sobic007G004000--Sobic006G251900 Sobic010G130100 Sobic010G130100 Sobic007G004000--Sobic010G130100 Sobic003G114500 Sobic003G114500 Sobic007G004000--Sobic003G114500 Sobic003G377500 Sobic003G377500 Sobic001G409800--Sobic003G377500 Sobic007G000300 Sobic007G000300 Sobic001G409800--Sobic007G000300 Sobic009G228000 Sobic009G228000 Sobic001G409800--Sobic009G228000 Sobic005G111700 Sobic005G111700 Sobic001G409800--Sobic005G111700 Sobic001G409800--Sobic010G244900 Sobic009G107300 Sobic009G107300 Sobic001G409800--Sobic009G107300 Sobic003G241700 Sobic003G241700 Sobic001G409800--Sobic003G241700 Sobic001G409800--Sobic001G480100 Sobic004G213800 Sobic004G213800 Sobic001G409800--Sobic004G213800 Sobic009G126300 Sobic009G126300 Sobic002G388500--Sobic009G126300 Sobic009G182600 Sobic009G182600 Sobic002G388500--Sobic009G182600 Sobic010G078900 Sobic010G078900 Sobic002G388500--Sobic010G078900 Sobic003G252100 Sobic003G252100 Sobic002G388500--Sobic003G252100 Sobic008G011000 Sobic008G011000 Sobic002G388500--Sobic008G011000 Sobic001G493700 Sobic001G493700 Sobic002G388500--Sobic001G493700 Sobic004G223000 Sobic004G223000 Sobic002G388500--Sobic004G223000 Sobic002G388500--Sobic004G088501 Sobic001G230000 Sobic001G230000 Sobic002G388500--Sobic001G230000 Sobic002G106000 Sobic002G106000 Sobic001G223300--Sobic002G106000 Sobic006G141300 Sobic006G141300 Sobic001G223300--Sobic006G141300 Sobic002G419000 Sobic002G419000 Sobic001G223300--Sobic002G419000 Sobic003G247200 Sobic003G247200 Sobic001G223300--Sobic003G247200 Sobic007G080200 Sobic007G080200 Sobic001G223300--Sobic007G080200 Sobic002G406300 Sobic002G406300 Sobic001G223300--Sobic002G406300 Sobic002G400300 Sobic002G400300 Sobic001G223300--Sobic002G400300 Sobic002G014200 Sobic002G014200 Sobic001G223300--Sobic002G014200 Sobic001G223300--Sobic004G259000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.