Gene annotation
Transcriptome id Sobic.001G217600.3,Sobic.001G217600.1,Sobic.001G217600.2
Synonym Sb01g019160, TXR1
Functional annotation mitochondrial import inner membrane translocase subunit Tim16, putative, expressed
UniProt C5WYD8
Pfam PF03656
Panther DB PTHR12388 PTHR12388:SF2
NCBI CDD KOG3442; Uncharacterized conserved protein
KEGG Orthology K17805; PAM16, mitochondrial import inner membrane translocase subunit TIM16
Gene Ontology GO:0005744; TIM23 mitochondrial import inner membrane translocase complex


Orthologs (automatic annotation)
TAIR AT3G59280 : Protein Transporter, Pam16
RAP-DB (Rice) LOC_Os10g33910.1 : mitochondrial import inner membrane translocase subunit Tim16, putative, expressed
MaizeGDB (Corn) Zm00025a006585
Brachypodium KQJ97120
Barley HORVU1Hr1G041710.3 , HORVU1Hr1G041710.10 , HORVU1Hr1G041710.8 , HORVU1Hr1G041710.9 , HORVU1Hr1G041710.1 , HORVU1Hr1G041710.2 , HORVU1Hr1G041710.4 , HORVU1Hr1G041710.5 , HORVU1Hr1G041710.6 , HORVU1Hr1G041710.7
Wheat TraesCS1A02G156300 , TraesCS1D02G154800 , TraesCS1B02G173300
Populus -


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cDNA sequences
Sobic.001G217600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G093500 ribosomal protein S7, putative, expressed K13173: arginine and glutamate-rich protein 1
2 Sobic.010G188800 EF hand family protein, putative, expressed K13448: calcium-binding protein CML
3 Sobic.010G025850 - -
4 Sobic.010G014100 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
5 Sobic.002G268800 arsenical pump-driving ATPase, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase
6 Sobic.004G088501 - K17302: COPB2, coatomer subunit beta'
7 Sobic.007G213000 beta 1,2-xylosyltransferase, putative, expressed K03714: glycoprotein 2-beta-D-xylosyltransferase
8 Sobic.005G087900 non-lysosomal glucosylceramidase, putative, expressed K17108: non-lysosomal glucosylceramidase
9 Sobic.008G185800 translation initiation factor IF-3, putative, expressed K02520: infC, translation initiation factor IF-3
10 Sobic.001G396100 expressed protein -
11 Sobic.010G078900 transcription elongation factor SPT5 homolog 1, putative, expressed K15172: SUPT5H, transcription elongation factor SPT5
12 Sobic.010G275400 expressed protein -
13 Sobic.004G088450 - K17302: COPB2, coatomer subunit beta'
14 Sobic.009G077600 glycosyl hydrolase family 47 domain contain protein, expressed K01230: MAN1A_C, mannosyl-oligosaccharide alpha-1,2-mannosidase
15 Sobic.002G076800 expressed protein -
16 Sobic.003G427600 villin protein, putative, expressed -
17 Sobic.003G346700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
18 Sobic.001G251200 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
19 Sobic.001G310100 WD domain, G-beta repeat domain containing protein, expressed K11804: DDB1- and CUL4-associated factor 8
20 Sobic.001G100900 OsDegp14 - Putative Deg protease homologue, expressed -


Gene co-expression network
sample Sobic001G217600 Sobic001G217600 Sobic004G093500 Sobic004G093500 Sobic001G217600--Sobic004G093500 Sobic010G188800 Sobic010G188800 Sobic001G217600--Sobic010G188800 Sobic010G025850 Sobic010G025850 Sobic001G217600--Sobic010G025850 Sobic010G014100 Sobic010G014100 Sobic001G217600--Sobic010G014100 Sobic002G268800 Sobic002G268800 Sobic001G217600--Sobic002G268800 Sobic004G088501 Sobic004G088501 Sobic001G217600--Sobic004G088501 Sobic007G213000 Sobic007G213000 Sobic001G217600--Sobic007G213000 Sobic005G087900 Sobic005G087900 Sobic001G217600--Sobic005G087900 Sobic008G185800 Sobic008G185800 Sobic001G217600--Sobic008G185800 Sobic003G075800 Sobic003G075800 Sobic004G093500--Sobic003G075800 Sobic002G076800 Sobic002G076800 Sobic004G093500--Sobic002G076800 Sobic002G127100 Sobic002G127100 Sobic004G093500--Sobic002G127100 Sobic003G038500 Sobic003G038500 Sobic004G093500--Sobic003G038500 Sobic001G260400 Sobic001G260400 Sobic004G093500--Sobic001G260400 Sobic001G465300 Sobic001G465300 Sobic004G093500--Sobic001G465300 Sobic007G004000 Sobic007G004000 Sobic004G093500--Sobic007G004000 Sobic001G542300 Sobic001G542300 Sobic004G093500--Sobic001G542300 Sobic003G153700 Sobic003G153700 Sobic004G093500--Sobic003G153700 Sobic006G179100 Sobic006G179100 Sobic010G188800--Sobic006G179100 Sobic002G294400 Sobic002G294400 Sobic010G188800--Sobic002G294400 Sobic004G259000 Sobic004G259000 Sobic010G188800--Sobic004G259000 Sobic010G188800--Sobic001G217600 Sobic007G203400 Sobic007G203400 Sobic010G188800--Sobic007G203400 Sobic010G188800--Sobic007G004000 Sobic001G409800 Sobic001G409800 Sobic010G188800--Sobic001G409800 Sobic002G388500 Sobic002G388500 Sobic010G188800--Sobic002G388500 Sobic001G223300 Sobic001G223300 Sobic010G188800--Sobic001G223300 Sobic002G034100 Sobic002G034100 Sobic010G025850--Sobic002G034100 Sobic001G128300 Sobic001G128300 Sobic010G025850--Sobic001G128300 Sobic004G306500 Sobic004G306500 Sobic010G025850--Sobic004G306500 Sobic010G141800 Sobic010G141800 Sobic010G025850--Sobic010G141800 Sobic001G100900 Sobic001G100900 Sobic010G025850--Sobic001G100900 Sobic003G362600 Sobic003G362600 Sobic010G025850--Sobic003G362600 Sobic004G091100 Sobic004G091100 Sobic010G025850--Sobic004G091100 Sobic003G115900 Sobic003G115900 Sobic010G025850--Sobic003G115900 Sobic009G161550 Sobic009G161550 Sobic010G025850--Sobic009G161550 Sobic003G107500 Sobic003G107500 Sobic010G014100--Sobic003G107500 Sobic002G211800 Sobic002G211800 Sobic010G014100--Sobic002G211800 Sobic010G014100--Sobic001G128300 Sobic010G226000 Sobic010G226000 Sobic010G014100--Sobic010G226000 Sobic001G310100 Sobic001G310100 Sobic010G014100--Sobic001G310100 Sobic002G344000 Sobic002G344000 Sobic010G014100--Sobic002G344000 Sobic010G014100--Sobic001G100900 Sobic001G389100 Sobic001G389100 Sobic010G014100--Sobic001G389100 Sobic002G213300 Sobic002G213300 Sobic010G014100--Sobic002G213300 Sobic005G177700 Sobic005G177700 Sobic002G268800--Sobic005G177700 Sobic006G180000 Sobic006G180000 Sobic002G268800--Sobic006G180000 Sobic003G316200 Sobic003G316200 Sobic002G268800--Sobic003G316200 Sobic003G264100 Sobic003G264100 Sobic002G268800--Sobic003G264100 Sobic004G241900 Sobic004G241900 Sobic002G268800--Sobic004G241900 Sobic007G056100 Sobic007G056100 Sobic002G268800--Sobic007G056100 Sobic003G312200 Sobic003G312200 Sobic002G268800--Sobic003G312200 Sobic002G238400 Sobic002G238400 Sobic002G268800--Sobic002G238400 Sobic009G068500 Sobic009G068500 Sobic002G268800--Sobic009G068500 Sobic004G088450 Sobic004G088450 Sobic004G088501--Sobic004G088450 Sobic009G126300 Sobic009G126300 Sobic004G088501--Sobic009G126300 Sobic003G337300 Sobic003G337300 Sobic004G088501--Sobic003G337300 Sobic004G178300 Sobic004G178300 Sobic004G088501--Sobic004G178300 Sobic006G034500 Sobic006G034500 Sobic004G088501--Sobic006G034500 Sobic001G493700 Sobic001G493700 Sobic004G088501--Sobic001G493700 Sobic006G131000 Sobic006G131000 Sobic004G088501--Sobic006G131000 Sobic001G281100 Sobic001G281100 Sobic004G088501--Sobic001G281100 Sobic004G322400 Sobic004G322400 Sobic004G088501--Sobic004G322400 Sobic001G127000 Sobic001G127000 Sobic007G213000--Sobic001G127000 Sobic002G370900 Sobic002G370900 Sobic007G213000--Sobic002G370900 Sobic003G427600 Sobic003G427600 Sobic007G213000--Sobic003G427600 Sobic003G036500 Sobic003G036500 Sobic007G213000--Sobic003G036500 Sobic003G270600 Sobic003G270600 Sobic007G213000--Sobic003G270600 Sobic009G122500 Sobic009G122500 Sobic007G213000--Sobic009G122500 Sobic009G229600 Sobic009G229600 Sobic007G213000--Sobic009G229600 Sobic004G178200 Sobic004G178200 Sobic007G213000--Sobic004G178200 Sobic003G392550 Sobic003G392550 Sobic007G213000--Sobic003G392550 Sobic001G251200 Sobic001G251200 Sobic005G087900--Sobic001G251200 Sobic003G036600 Sobic003G036600 Sobic005G087900--Sobic003G036600 Sobic001G521500 Sobic001G521500 Sobic005G087900--Sobic001G521500 Sobic005G087900--Sobic001G128300 Sobic002G229600 Sobic002G229600 Sobic005G087900--Sobic002G229600 Sobic003G298600 Sobic003G298600 Sobic005G087900--Sobic003G298600 Sobic007G056600 Sobic007G056600 Sobic005G087900--Sobic007G056600 Sobic005G087900--Sobic003G362600 Sobic001G399800 Sobic001G399800 Sobic005G087900--Sobic001G399800 Sobic006G093300 Sobic006G093300 Sobic008G185800--Sobic006G093300 Sobic009G192300 Sobic009G192300 Sobic008G185800--Sobic009G192300 Sobic003G241700 Sobic003G241700 Sobic008G185800--Sobic003G241700 Sobic006G184900 Sobic006G184900 Sobic008G185800--Sobic006G184900 Sobic001G030000 Sobic001G030000 Sobic008G185800--Sobic001G030000 Sobic008G185800--Sobic010G226000 Sobic010G275400 Sobic010G275400 Sobic008G185800--Sobic010G275400 Sobic001G503900 Sobic001G503900 Sobic008G185800--Sobic001G503900 Sobic010G169900 Sobic010G169900 Sobic008G185800--Sobic010G169900
Octagon: transcription factors


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