Gene annotation
| Transcriptome id | Sobic.001G536100.1 |
|---|---|
| Synonym | Sb01g049890 |
| Functional annotation | lysM domain containing protein, putative, expressed |
| UniProt | C5WMN3 |
| Pfam | - |
| Panther DB | PTHR20932 PTHR20932:SF14 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G23130 : Peptidoglycan-binding LysM domain-containing protein |
|---|---|
| RAP-DB (Rice) | LOC_Os03g01990.1 : lysM domain containing protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a000171 , Zm00025a053542 |
| Brachypodium | KQK24060 |
| Barley | HORVU4Hr1G089910.3 , HORVU4Hr1G089910.2 , HORVU4Hr1G089910.7 , HORVU4Hr1G089910.6 , HORVU4Hr1G089910.5 , HORVU4Hr1G089910.8 |
| Wheat | TraesCSU02G126200 , TraesCS4B02G387000 , TraesCS5A02G551300 |
| Populus | - |
JBrowse
| Sobic.001G536100 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G361500 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@Indole-acetic acid (IAA)-amido synthetase(PubMedID : 30367619)@OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed | K14487: auxin responsive GH3 gene family |
| 2 | Sobic.001G408400 | phosphatase, putative, expressed | K07252: dolichyldiphosphatase |
| 3 | Sobic.001G093666 | - | - |
| 4 | Sobic.003G349900 | 50S ribosomal protein L17, putative, expressed | K02879: RP-L17, MRPL17, large subunit ribosomal protein L17 |
| 5 | Sobic.003G284100 | expressed protein | - |
| 6 | Sobic.003G234500 | CA(PubMedID : 19549309)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed | K01673: cynT, carbonic anhydrase |
| 7 | Sobic.002G382100 | LTPL56 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 8 | Sobic.006G267100 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 9 | Sobic.003G306500 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsGH3.2 - Probable indole-3-acetic acid-amido synthetase, expressed | K14487: auxin responsive GH3 gene family |
| 10 | Sobic.003G212000 | OsCML12 - Calmodulin-related calcium sensor protein, expressed | K13448: calcium-binding protein CML |
| 11 | Sobic.004G329201 | - | K02260: cytochrome c oxidase assembly protein subunit 17 |
| 12 | Sobic.006G120900 | dehydrogenase, putative, expressed | K00030: isocitrate dehydrogenase (NAD+) |
| 13 | Sobic.002G424200 | SNF1-related protein kinase regulatory subunit beta-1, putative, expressed | K07199: 5'-AMP-activated protein kinase, regulatory beta subunit |
| 14 | Sobic.002G397900 | 39S ribosomal protein L46, mitochondrial precursor, putative, expressed | K17427: large subunit ribosomal protein L46 |
| 15 | Sobic.002G368100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@COBRA, putative, expressed | - |
| 16 | Sobic.004G074900 | serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed | K11583: serine/threonine-protein phosphatase 2A regulatory subunit B'' |
| 17 | Sobic.003G380300 | cytochrome c, putative, expressed | K08738: cytochrome c |
| 18 | Sobic.004G038500 | cyclin-related protein, putative, expressed | - |
| 19 | Sobic.008G141600 | expressed protein | - |
| 20 | Sobic.003G040700 | choline/ethanolamine kinase, putative, expressed | K14156: choline/ethanolamine kinase |
Gene co-expression network
Octagon: transcription factors
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