Gene annotation
Transcriptome id Sobic.002G002000.1,Sobic.002G002000.3,Sobic.002G002000.2,Sobic.002G002000.4
Synonym Sb02g000360
Functional annotation expressed protein
UniProt A0A1W0W1L7 , A0A1W0W1P1 , C5X732 , A0A1W0W1L4
Pfam -
Panther DB PTHR31071 PTHR31071:SF15
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G50660 : -
RAP-DB (Rice) LOC_Os05g41910.1 : expressed protein
MaizeGDB (Corn) Zm00025a044827
Brachypodium -
Barley -
Wheat TraesCS2A02G256300 , TraesCS2A02G256300
Populus -


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cDNA sequences
Sobic.002G002000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G272500 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
2 Sobic.006G192600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat protein PPR868-14, putative, expressed -
3 Sobic.005G101400 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
4 Sobic.004G337600 - -
5 Sobic.002G044500 chloroplast 30S ribosomal protein S16, putative, expressed K02959: RP-S16, MRPS16, small subunit ribosomal protein S16
6 Sobic.002G149966 - -
7 Sobic.002G150032 - -
8 Sobic.003G168500 chloroplast 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
9 Sobic.003G172850 - K03043: DNA-directed RNA polymerase subunit beta
10 Sobic.006G143800 - -
11 Sobic.001G134900 exostosin, putative, expressed -
12 Sobic.001G266000 OsClp10 - Putative Clp protease homologue, expressed -
13 Sobic.003G172900 NADPH-dependent oxidoreductase, putative, expressed K05581: NAD(P)H-quinone oxidoreductase subunit J
14 Sobic.003G166400 - K02911: RP-L32, MRPL32, large subunit ribosomal protein L32
15 Sobic.003G290050 - -
16 Sobic.003G169400 DNA-directed RNA polymerase subunit beta, putative, expressed K03046: DNA-directed RNA polymerase subunit beta'
17 Sobic.003G173266 - K02956: RP-S15, MRPS15, small subunit ribosomal protein S15
18 Sobic.006G124850 - K02948: RP-S11, MRPS11, small subunit ribosomal protein S11
19 Sobic.010G254000 cycloartenol synthase, putative, expressed K19011: achilleol B synthase
20 Sobic.004G251400 - -


Gene co-expression network
sample Sobic002G002000 Sobic002G002000 Sobic004G272500 Sobic004G272500 Sobic002G002000--Sobic004G272500 Sobic006G192600 Sobic006G192600 Sobic002G002000--Sobic006G192600 Sobic005G101400 Sobic005G101400 Sobic002G002000--Sobic005G101400 Sobic004G337600 Sobic004G337600 Sobic002G002000--Sobic004G337600 Sobic002G044500 Sobic002G044500 Sobic002G002000--Sobic002G044500 Sobic002G149966 Sobic002G149966 Sobic002G002000--Sobic002G149966 Sobic002G150032 Sobic002G150032 Sobic002G002000--Sobic002G150032 Sobic003G168500 Sobic003G168500 Sobic002G002000--Sobic003G168500 Sobic003G172850 Sobic003G172850 Sobic002G002000--Sobic003G172850 Sobic009G104850 Sobic009G104850 Sobic004G272500--Sobic009G104850 Sobic008G160300 Sobic008G160300 Sobic004G272500--Sobic008G160300 Sobic010G107601 Sobic010G107601 Sobic004G272500--Sobic010G107601 Sobic004G272500--Sobic004G337600 Sobic003G172400 Sobic003G172400 Sobic004G272500--Sobic003G172400 Sobic005G096500 Sobic005G096500 Sobic004G272500--Sobic005G096500 Sobic003G169400 Sobic003G169400 Sobic004G272500--Sobic003G169400 Sobic004G272500--Sobic003G168500 Sobic003G171900 Sobic003G171900 Sobic004G272500--Sobic003G171900 Sobic006G192600--Sobic004G337600 Sobic006G192600--Sobic003G168500 Sobic006G192600--Sobic003G172850 Sobic003G168800 Sobic003G168800 Sobic006G192600--Sobic003G168800 Sobic006G192600--Sobic002G044500 Sobic004G251400 Sobic004G251400 Sobic006G192600--Sobic004G251400 Sobic006G192600--Sobic003G172400 Sobic002G165200 Sobic002G165200 Sobic006G192600--Sobic002G165200 Sobic006G192600--Sobic008G160300 Sobic001G217800 Sobic001G217800 Sobic005G101400--Sobic001G217800 Sobic005G101400--Sobic009G104850 Sobic005G167450 Sobic005G167450 Sobic005G101400--Sobic005G167450 Sobic005G101400--Sobic004G272500 Sobic001G540250 Sobic001G540250 Sobic005G101400--Sobic001G540250 Sobic009G069450 Sobic009G069450 Sobic005G101400--Sobic009G069450 Sobic003G249300 Sobic003G249300 Sobic005G101400--Sobic003G249300 Sobic002G322101 Sobic002G322101 Sobic005G101400--Sobic002G322101 Sobic005G101400--Sobic003G169400 Sobic004G337600--Sobic003G168500 Sobic004G337600--Sobic002G044500 Sobic004G337600--Sobic008G160300 Sobic004G337600--Sobic004G251400 Sobic004G337600--Sobic003G171900 Sobic003G172900 Sobic003G172900 Sobic004G337600--Sobic003G172900 Sobic003G169300 Sobic003G169300 Sobic004G337600--Sobic003G169300 Sobic004G337600--Sobic003G172850 Sobic005G110493 Sobic005G110493 Sobic004G337600--Sobic005G110493 Sobic002G044500--Sobic003G168500 Sobic002G044500--Sobic002G149966 Sobic002G044500--Sobic003G169400 Sobic002G044500--Sobic002G150032 Sobic002G044500--Sobic004G337600 Sobic002G044500--Sobic003G172850 Sobic002G044500--Sobic003G172900 Sobic006G124850 Sobic006G124850 Sobic002G044500--Sobic006G124850 Sobic001G266000 Sobic001G266000 Sobic002G044500--Sobic001G266000 Sobic002G149966--Sobic002G150032 Sobic002G149966--Sobic002G044500 Sobic002G149966--Sobic006G124850 Sobic002G149966--Sobic001G266000 Sobic003G290050 Sobic003G290050 Sobic002G149966--Sobic003G290050 Sobic002G014900 Sobic002G014900 Sobic002G149966--Sobic002G014900 Sobic002G149966--Sobic003G172900 Sobic002G149966--Sobic003G168500 Sobic002G149966--Sobic003G172850 Sobic002G150032--Sobic002G149966 Sobic002G150032--Sobic002G014900 Sobic002G150032--Sobic001G266000 Sobic002G150032--Sobic003G172900 Sobic002G150032--Sobic002G044500 Sobic002G150032--Sobic003G172850 Sobic002G150032--Sobic003G290050 Sobic002G150032--Sobic006G124850 Sobic002G150032--Sobic004G251400 Sobic003G168500--Sobic002G044500 Sobic003G168500--Sobic003G171900 Sobic003G168500--Sobic008G160300 Sobic003G168500--Sobic003G172850 Sobic003G168500--Sobic003G169400 Sobic003G168500--Sobic004G337600 Sobic003G168500--Sobic003G172400 Sobic003G168500--Sobic010G107601 Sobic003G168500--Sobic003G169300 Sobic003G172850--Sobic003G168500 Sobic003G172850--Sobic001G266000 Sobic003G173266 Sobic003G173266 Sobic003G172850--Sobic003G173266 Sobic003G172850--Sobic002G044500 Sobic003G172850--Sobic003G172900 Sobic003G172850--Sobic002G150032 Sobic003G172850--Sobic003G169300 Sobic003G172850--Sobic003G168800 Sobic003G172850--Sobic004G251400
Octagon: transcription factors


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