Gene annotation
Transcriptome id Sobic.002G020200.1
Synonym Sb02g001880
Functional annotation expressed protein
UniProt C5X8N4
Pfam PF14009
Panther DB PTHR33052 PTHR33052:SF28
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G76600 : -
RAP-DB (Rice) LOC_Os07g03120.1 : expressed protein
MaizeGDB (Corn) Zm00025a016209
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G272700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@4-Coumarate-CoA ligase(PubMedID : 22313236)@AMP-binding domain containing protein, expressed K01904: 4-coumarate--CoA ligase
2 Sobic.005G176100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mannose-6-phosphate isomerase, putative, expressed K01809: manA, mannose-6-phosphate isomerase
3 Sobic.002G204100 cytochrome c oxidase copper chaperone, putative, expressed K02260: cytochrome c oxidase assembly protein subunit 17
4 Sobic.004G219300 GLTP domain containing protein, putative, expressed -
5 Sobic.006G150800 gibberellin 2-beta-dioxygenase 7, putative, expressed K04125: gibberellin 2beta-dioxygenase
6 Sobic.004G193900 expressed protein -
7 Sobic.001G185800 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
8 Sobic.009G016000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
9 Sobic.002G004800 leucine rich repeat domain containing protein, putative, expressed -
10 Sobic.004G117200 expressed protein -
11 Sobic.004G220700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Lyase(PubMedID : 30367619)@phenylalanine ammonia-lyase, putative, expressed K10775: phenylalanine ammonia-lyase
12 Sobic.010G225801 - -
13 Sobic.009G203100 expressed protein -
14 Sobic.004G084900 SPX domain containing protein, putative, expressed -
15 Sobic.009G036700 EGG APPARATUS-1, putative, expressed -
16 Sobic.010G183600 bZIP transcription factor domain containing protein, expressed K16241: transcription factor HY5
17 Sobic.010G083500 pyridine nucleotide-disulphide oxidoreductase domain containing protein, expressed K17872: NDC1, demethylphylloquinone reductase
18 Sobic.002G044800 SAM dependent carboxyl methyltransferase, putative, expressed -
19 Sobic.005G042800 -(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF623 domain containing protein, expressed -
20 Sobic.003G050400 phospholipase D, putative, expressed K01115: phospholipase D1/2


Gene co-expression network
sample Sobic002G020200 Sobic002G020200 Sobic004G272700 Sobic004G272700 Sobic002G020200--Sobic004G272700 Sobic005G176100 Sobic005G176100 Sobic002G020200--Sobic005G176100 Sobic002G204100 Sobic002G204100 Sobic002G020200--Sobic002G204100 Sobic004G219300 Sobic004G219300 Sobic002G020200--Sobic004G219300 Sobic006G150800 Sobic006G150800 Sobic002G020200--Sobic006G150800 Sobic004G193900 Sobic004G193900 Sobic002G020200--Sobic004G193900 Sobic001G185800 Sobic001G185800 Sobic002G020200--Sobic001G185800 Sobic009G016000 Sobic009G016000 Sobic002G020200--Sobic009G016000 Sobic002G004800 Sobic002G004800 Sobic002G020200--Sobic002G004800 Sobic007G088000 Sobic007G088000 Sobic004G272700--Sobic007G088000 Sobic002G379600 Sobic002G379600 Sobic004G272700--Sobic002G379600 Sobic003G306100 Sobic003G306100 Sobic004G272700--Sobic003G306100 Sobic010G083500 Sobic010G083500 Sobic004G272700--Sobic010G083500 Sobic004G332900 Sobic004G332900 Sobic004G272700--Sobic004G332900 Sobic010G019900 Sobic010G019900 Sobic004G272700--Sobic010G019900 Sobic001G344800 Sobic001G344800 Sobic004G272700--Sobic001G344800 Sobic010G178200 Sobic010G178200 Sobic004G272700--Sobic010G178200 Sobic010G165500 Sobic010G165500 Sobic004G272700--Sobic010G165500 Sobic001G112900 Sobic001G112900 Sobic005G176100--Sobic001G112900 Sobic003G339200 Sobic003G339200 Sobic005G176100--Sobic003G339200 Sobic004G344600 Sobic004G344600 Sobic005G176100--Sobic004G344600 Sobic002G052100 Sobic002G052100 Sobic005G176100--Sobic002G052100 Sobic003G162400 Sobic003G162400 Sobic005G176100--Sobic003G162400 Sobic001G181100 Sobic001G181100 Sobic005G176100--Sobic001G181100 Sobic004G282900 Sobic004G282900 Sobic005G176100--Sobic004G282900 Sobic004G214800 Sobic004G214800 Sobic005G176100--Sobic004G214800 Sobic010G183600 Sobic010G183600 Sobic005G176100--Sobic010G183600 Sobic009G203100 Sobic009G203100 Sobic002G204100--Sobic009G203100 Sobic003G253000 Sobic003G253000 Sobic002G204100--Sobic003G253000 Sobic001G459200 Sobic001G459200 Sobic002G204100--Sobic001G459200 Sobic009G185800 Sobic009G185800 Sobic002G204100--Sobic009G185800 Sobic005G034400 Sobic005G034400 Sobic002G204100--Sobic005G034400 Sobic004G049900 Sobic004G049900 Sobic002G204100--Sobic004G049900 Sobic004G055200 Sobic004G055200 Sobic002G204100--Sobic004G055200 Sobic008G189300 Sobic008G189300 Sobic002G204100--Sobic008G189300 Sobic002G187500 Sobic002G187500 Sobic002G204100--Sobic002G187500 Sobic004G219300--Sobic001G459200 Sobic003G130800 Sobic003G130800 Sobic004G219300--Sobic003G130800 Sobic004G330700 Sobic004G330700 Sobic004G219300--Sobic004G330700 Sobic010G135000 Sobic010G135000 Sobic004G219300--Sobic010G135000 Sobic004G219300--Sobic004G055200 Sobic004G219300--Sobic009G185800 Sobic008G033600 Sobic008G033600 Sobic004G219300--Sobic008G033600 Sobic010G232100 Sobic010G232100 Sobic004G219300--Sobic010G232100 Sobic006G180200 Sobic006G180200 Sobic004G219300--Sobic006G180200 Sobic006G150800--Sobic010G183600 Sobic006G150800--Sobic002G052100 Sobic006G150800--Sobic005G176100 Sobic006G150800--Sobic001G181100 Sobic010G271800 Sobic010G271800 Sobic006G150800--Sobic010G271800 Sobic006G150800--Sobic004G214800 Sobic006G154800 Sobic006G154800 Sobic006G150800--Sobic006G154800 Sobic003G326000 Sobic003G326000 Sobic006G150800--Sobic003G326000 Sobic002G052000 Sobic002G052000 Sobic006G150800--Sobic002G052000 Sobic004G107700 Sobic004G107700 Sobic004G193900--Sobic004G107700 Sobic007G087200 Sobic007G087200 Sobic004G193900--Sobic007G087200 Sobic001G224000 Sobic001G224000 Sobic004G193900--Sobic001G224000 Sobic001G503100 Sobic001G503100 Sobic004G193900--Sobic001G503100 Sobic006G234800 Sobic006G234800 Sobic004G193900--Sobic006G234800 Sobic001G449600 Sobic001G449600 Sobic004G193900--Sobic001G449600 Sobic001G304100 Sobic001G304100 Sobic004G193900--Sobic001G304100 Sobic002G125700 Sobic002G125700 Sobic004G193900--Sobic002G125700 Sobic006G132900 Sobic006G132900 Sobic004G193900--Sobic006G132900 Sobic010G259001 Sobic010G259001 Sobic001G185800--Sobic010G259001 Sobic001G302200 Sobic001G302200 Sobic001G185800--Sobic001G302200 Sobic004G130600 Sobic004G130600 Sobic001G185800--Sobic004G130600 Sobic010G254300 Sobic010G254300 Sobic001G185800--Sobic010G254300 Sobic001G071800 Sobic001G071800 Sobic001G185800--Sobic001G071800 Sobic003G229600 Sobic003G229600 Sobic001G185800--Sobic003G229600 Sobic004G165500 Sobic004G165500 Sobic001G185800--Sobic004G165500 Sobic004G317500 Sobic004G317500 Sobic001G185800--Sobic004G317500 Sobic001G043000 Sobic001G043000 Sobic001G185800--Sobic001G043000 Sobic003G139500 Sobic003G139500 Sobic009G016000--Sobic003G139500 Sobic009G246300 Sobic009G246300 Sobic009G016000--Sobic009G246300 Sobic009G016000--Sobic010G183600 Sobic008G180800 Sobic008G180800 Sobic009G016000--Sobic008G180800 Sobic009G016000--Sobic001G043000 Sobic007G121300 Sobic007G121300 Sobic009G016000--Sobic007G121300 Sobic003G428600 Sobic003G428600 Sobic009G016000--Sobic003G428600 Sobic001G331600 Sobic001G331600 Sobic009G016000--Sobic001G331600 Sobic010G104700 Sobic010G104700 Sobic009G016000--Sobic010G104700 Sobic002G004900 Sobic002G004900 Sobic002G004800--Sobic002G004900 Sobic009G177700 Sobic009G177700 Sobic002G004800--Sobic009G177700 Sobic003G113700 Sobic003G113700 Sobic002G004800--Sobic003G113700 Sobic009G139400 Sobic009G139400 Sobic002G004800--Sobic009G139400 Sobic005G092900 Sobic005G092900 Sobic002G004800--Sobic005G092900 Sobic009G009600 Sobic009G009600 Sobic002G004800--Sobic009G009600 Sobic008G158100 Sobic008G158100 Sobic002G004800--Sobic008G158100 Sobic002G004800--Sobic004G049900 Sobic002G004800--Sobic007G087200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.