Gene annotation
Transcriptome id Sobic.004G272700.1
Synonym 4CL3, Sb04g031010,
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
4-Coumarate-CoA ligase (PubMedID : 22313236)
AMP-binding domain containing protein, expressed
UniProt Q41288 , C5Y0F9
Pfam PF13193 PF00501
Panther DB PTHR24096 PTHR24096:SF169
NCBI CDD -
KEGG Orthology K01904; 4-coumarate--CoA ligase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT1G65060 : 4-coumarate:CoA ligase 3
RAP-DB (Rice) LOC_Os02g46970.1 : AMP-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a032401
Brachypodium KQK00870
Barley HORVU0Hr1G018190.5 , HORVU0Hr1G018190.4 , HORVU0Hr1G018190.7 , HORVU0Hr1G018190.6 , HORVU0Hr1G018190.1 , HORVU0Hr1G018190.3 , HORVU0Hr1G018190.2 , HORVU0Hr1G018190.9 , HORVU0Hr1G018190.8 , HORVU7Hr1G111130.6 , HORVU7Hr1G111130.7 , HORVU7Hr1G111130.2 , HORVU7Hr1G111130.3 , HORVU6Hr1G030390.3 , HORVU6Hr1G030390.2 , HORVU6Hr1G030390.5 , HORVU0Hr1G018190.11 , HORVU0Hr1G018190.10 , HORVU0Hr1G018190.13 , HORVU0Hr1G018190.12 , HORVU7Hr1G111130.5
Wheat TraesCS6A02G151700 , TraesCS6A02G266700 , TraesCS7D02G483400 , TraesCS6D02G141700 , TraesCS7A02G496200 , TraesCS6B02G179900 , TraesCS6B02G179900 , TraesCS6D02G248000 , TraesCS6B02G294100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G088000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NADPH reductase, putative, expressed K00327: NADPH-ferrihemoprotein reductase
2 Sobic.002G379600 phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplast precursor, putative, expressed K01626: E2.5.1.54, aroF, aroG, 3-deoxy-7-phosphoheptulonate synthase
3 Sobic.003G306100 chorismate mutase, chloroplast precursor, putative, expressed K01850: chorismate mutase
4 Sobic.010G083500 pyridine nucleotide-disulphide oxidoreductase domain containing protein, expressed K17872: NDC1, demethylphylloquinone reductase
5 Sobic.004G332900 protein phosphatase 2C, putative, expressed K14803: protein phosphatase PTC2/3
6 Sobic.010G019900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
7 Sobic.001G344800 jacalin-like lectin domain containing protein, expressed -
8 Sobic.010G178200 hemoglobin-like protein HbO, putative, expressed -
9 Sobic.010G165500 ABC-2 type transporter, putative, expressed -
10 Sobic.003G333800 NADH-cytochrome b5 reductase, putative, expressed K00326: cytochrome-b5 reductase
11 Sobic.001G344700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@jacalin-like lectin domain containing protein, expressed -
12 Sobic.001G131400 thioesterase family protein, putative, expressed -
13 Sobic.003G288000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
14 Sobic.009G203100 expressed protein -
15 Sobic.001G351000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplast precursor, putative, expressed K01626: E2.5.1.54, aroF, aroG, 3-deoxy-7-phosphoheptulonate synthase
16 Sobic.004G193900 expressed protein -
17 Sobic.004G219300 GLTP domain containing protein, putative, expressed -
18 Sobic.002G073800 vacuolar ATPase G subunit, putative, expressed K02152: ATPeV1G, V-type H+-transporting ATPase subunit G
19 Sobic.006G201400 seed specific protein Bn15D1B, putative, expressed -
20 Sobic.008G046900 ubiquinol-cytochrome C reductase hinge protein, putative, expressed K00416: QCR6, ubiquinol-cytochrome c reductase subunit 6


Gene co-expression network
sample Sobic004G272700 Sobic004G272700 Sobic007G088000 Sobic007G088000 Sobic004G272700--Sobic007G088000 Sobic002G379600 Sobic002G379600 Sobic004G272700--Sobic002G379600 Sobic003G306100 Sobic003G306100 Sobic004G272700--Sobic003G306100 Sobic010G083500 Sobic010G083500 Sobic004G272700--Sobic010G083500 Sobic004G332900 Sobic004G332900 Sobic004G272700--Sobic004G332900 Sobic010G019900 Sobic010G019900 Sobic004G272700--Sobic010G019900 Sobic001G344800 Sobic001G344800 Sobic004G272700--Sobic001G344800 Sobic010G178200 Sobic010G178200 Sobic004G272700--Sobic010G178200 Sobic010G165500 Sobic010G165500 Sobic004G272700--Sobic010G165500 Sobic007G088000--Sobic003G306100 Sobic004G055200 Sobic004G055200 Sobic007G088000--Sobic004G055200 Sobic004G187900 Sobic004G187900 Sobic007G088000--Sobic004G187900 Sobic001G281400 Sobic001G281400 Sobic007G088000--Sobic001G281400 Sobic009G141800 Sobic009G141800 Sobic007G088000--Sobic009G141800 Sobic001G040800 Sobic001G040800 Sobic007G088000--Sobic001G040800 Sobic001G459200 Sobic001G459200 Sobic007G088000--Sobic001G459200 Sobic006G099700 Sobic006G099700 Sobic007G088000--Sobic006G099700 Sobic001G499300 Sobic001G499300 Sobic007G088000--Sobic001G499300 Sobic003G333800 Sobic003G333800 Sobic002G379600--Sobic003G333800 Sobic001G410200 Sobic001G410200 Sobic002G379600--Sobic001G410200 Sobic003G410500 Sobic003G410500 Sobic002G379600--Sobic003G410500 Sobic002G128800 Sobic002G128800 Sobic002G379600--Sobic002G128800 Sobic001G459900 Sobic001G459900 Sobic002G379600--Sobic001G459900 Sobic009G101700 Sobic009G101700 Sobic002G379600--Sobic009G101700 Sobic001G040100 Sobic001G040100 Sobic002G379600--Sobic001G040100 Sobic010G023800 Sobic010G023800 Sobic002G379600--Sobic010G023800 Sobic009G179100 Sobic009G179100 Sobic002G379600--Sobic009G179100 Sobic001G351000 Sobic001G351000 Sobic003G306100--Sobic001G351000 Sobic004G065500 Sobic004G065500 Sobic003G306100--Sobic004G065500 Sobic001G034700 Sobic001G034700 Sobic003G306100--Sobic001G034700 Sobic003G285800 Sobic003G285800 Sobic003G306100--Sobic003G285800 Sobic010G041600 Sobic010G041600 Sobic003G306100--Sobic010G041600 Sobic003G150000 Sobic003G150000 Sobic003G306100--Sobic003G150000 Sobic001G477300 Sobic001G477300 Sobic003G306100--Sobic001G477300 Sobic010G086200 Sobic010G086200 Sobic003G306100--Sobic010G086200 Sobic005G168100 Sobic005G168100 Sobic003G306100--Sobic005G168100 Sobic010G083500--Sobic010G165500 Sobic006G123300 Sobic006G123300 Sobic010G083500--Sobic006G123300 Sobic010G050800 Sobic010G050800 Sobic010G083500--Sobic010G050800 Sobic010G232100 Sobic010G232100 Sobic010G083500--Sobic010G232100 Sobic010G083500--Sobic007G088000 Sobic010G277800 Sobic010G277800 Sobic010G083500--Sobic010G277800 Sobic010G083500--Sobic004G272700 Sobic009G185800 Sobic009G185800 Sobic010G083500--Sobic009G185800 Sobic001G357300 Sobic001G357300 Sobic010G083500--Sobic001G357300 Sobic002G312400 Sobic002G312400 Sobic004G332900--Sobic002G312400 Sobic004G332900--Sobic001G499300 Sobic004G332900--Sobic001G034700 Sobic003G357300 Sobic003G357300 Sobic004G332900--Sobic003G357300 Sobic004G332900--Sobic001G351000 Sobic004G332900--Sobic010G041600 Sobic004G332900--Sobic010G178200 Sobic004G332900--Sobic001G459200 Sobic004G332900--Sobic003G285800 Sobic010G099900 Sobic010G099900 Sobic010G019900--Sobic010G099900 Sobic002G261000 Sobic002G261000 Sobic010G019900--Sobic002G261000 Sobic001G119400 Sobic001G119400 Sobic010G019900--Sobic001G119400 Sobic010G009300 Sobic010G009300 Sobic010G019900--Sobic010G009300 Sobic010G019900--Sobic001G499300 Sobic001G177800 Sobic001G177800 Sobic010G019900--Sobic001G177800 Sobic010G117900 Sobic010G117900 Sobic010G019900--Sobic010G117900 Sobic002G187500 Sobic002G187500 Sobic010G019900--Sobic002G187500 Sobic006G173900 Sobic006G173900 Sobic010G019900--Sobic006G173900 Sobic001G344700 Sobic001G344700 Sobic001G344800--Sobic001G344700 Sobic004G328601 Sobic004G328601 Sobic001G344800--Sobic004G328601 Sobic001G344800--Sobic004G272700 Sobic001G502500 Sobic001G502500 Sobic001G344800--Sobic001G502500 Sobic001G170700 Sobic001G170700 Sobic001G344800--Sobic001G170700 Sobic002G338400 Sobic002G338400 Sobic001G344800--Sobic002G338400 Sobic010G074600 Sobic010G074600 Sobic001G344800--Sobic010G074600 Sobic001G035600 Sobic001G035600 Sobic001G344800--Sobic001G035600 Sobic002G073800 Sobic002G073800 Sobic001G344800--Sobic002G073800 Sobic002G345300 Sobic002G345300 Sobic010G178200--Sobic002G345300 Sobic010G178200--Sobic003G285800 Sobic003G350300 Sobic003G350300 Sobic010G178200--Sobic003G350300 Sobic010G178200--Sobic010G041600 Sobic010G178200--Sobic001G034700 Sobic010G178200--Sobic001G281400 Sobic002G046100 Sobic002G046100 Sobic010G178200--Sobic002G046100 Sobic010G274900 Sobic010G274900 Sobic010G178200--Sobic010G274900 Sobic007G087200 Sobic007G087200 Sobic010G178200--Sobic007G087200 Sobic010G165500--Sobic006G099700 Sobic010G165500--Sobic007G088000 Sobic010G165500--Sobic010G083500 Sobic008G077600 Sobic008G077600 Sobic010G165500--Sobic008G077600 Sobic010G165500--Sobic010G232100 Sobic008G025500 Sobic008G025500 Sobic010G165500--Sobic008G025500 Sobic009G129800 Sobic009G129800 Sobic010G165500--Sobic009G129800 Sobic010G165500--Sobic001G357300 Sobic009G180500 Sobic009G180500 Sobic010G165500--Sobic009G180500
Octagon: transcription factors


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