Gene annotation
Transcriptome id Sobic.002G040300.1
Synonym Sb02g003450
Functional annotation expressed protein
UniProt C5XA77
Pfam -
Panther DB PTHR36333 PTHR36333:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G62780 : -
RAP-DB (Rice) LOC_Os04g01540.1 : expressed protein
MaizeGDB (Corn) Zm00025a045060
Brachypodium KQJ81683
Barley -
Wheat TraesCS2D02G036300 , TraesCS2A02G037200 , TraesCS2B02G050600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G444500 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
2 Sobic.010G035200 whirly transcription factor domain containing protein, expressed -
3 Sobic.008G130900 ribosomal protein S6, putative, expressed -
4 Sobic.002G131700 RNA recognition motif containing protein, putative, expressed -
5 Sobic.002G013700 PPR2, putative, expressed -
6 Sobic.003G373300 DNA polymerase I, putative, expressed -
7 Sobic.009G042200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsDegp6 - Putative Deg protease homologue, expressed -
8 Sobic.001G083100 Unnamed(PubMedID : 24676859)@WRKY4, expressed -
9 Sobic.003G084500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
10 Sobic.001G196200 CRS1/YhbY domain containing protein, expressed -
11 Sobic.007G171800 RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
12 Sobic.001G448600 GTP-binding protein, putative, expressed K03978: GTP-binding protein
13 Sobic.002G181000 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
14 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
15 Sobic.007G015300 calreticulin family protein, expressed -
16 Sobic.009G223200 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
17 Sobic.004G255500 SET domain-containing protein, putative, expressed -
18 Sobic.009G104700 prenyltransferase, putative, expressed K04040: chlG, chlorophyll/bacteriochlorophyll a synthase
19 Sobic.006G111600 cell division protease ftsH homolog 4, putative, expressed -
20 Sobic.001G148200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@antitermination NusB domain-containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G040300 Sobic002G040300 Sobic003G444500 Sobic003G444500 Sobic002G040300--Sobic003G444500 Sobic010G035200 Sobic010G035200 Sobic002G040300--Sobic010G035200 Sobic008G130900 Sobic008G130900 Sobic002G040300--Sobic008G130900 Sobic002G131700 Sobic002G131700 Sobic002G040300--Sobic002G131700 Sobic002G013700 Sobic002G013700 Sobic002G040300--Sobic002G013700 Sobic003G373300 Sobic003G373300 Sobic002G040300--Sobic003G373300 Sobic009G042200 Sobic009G042200 Sobic002G040300--Sobic009G042200 Sobic001G083100 Sobic001G083100 Sobic002G040300--Sobic001G083100 Sobic003G084500 Sobic003G084500 Sobic002G040300--Sobic003G084500 Sobic001G148200 Sobic001G148200 Sobic003G444500--Sobic001G148200 Sobic003G330100 Sobic003G330100 Sobic003G444500--Sobic003G330100 Sobic004G179200 Sobic004G179200 Sobic003G444500--Sobic004G179200 Sobic002G251400 Sobic002G251400 Sobic003G444500--Sobic002G251400 Sobic003G444500--Sobic009G042200 Sobic003G221700 Sobic003G221700 Sobic003G444500--Sobic003G221700 Sobic003G444500--Sobic003G084500 Sobic003G444500--Sobic002G131700 Sobic004G250200 Sobic004G250200 Sobic003G444500--Sobic004G250200 Sobic001G469933 Sobic001G469933 Sobic010G035200--Sobic001G469933 Sobic003G324700 Sobic003G324700 Sobic010G035200--Sobic003G324700 Sobic007G171800 Sobic007G171800 Sobic010G035200--Sobic007G171800 Sobic010G035200--Sobic002G131700 Sobic010G035200--Sobic001G083100 Sobic001G122400 Sobic001G122400 Sobic010G035200--Sobic001G122400 Sobic008G039600 Sobic008G039600 Sobic010G035200--Sobic008G039600 Sobic009G131600 Sobic009G131600 Sobic010G035200--Sobic009G131600 Sobic004G164100 Sobic004G164100 Sobic010G035200--Sobic004G164100 Sobic001G375000 Sobic001G375000 Sobic008G130900--Sobic001G375000 Sobic006G055800 Sobic006G055800 Sobic008G130900--Sobic006G055800 Sobic003G128400 Sobic003G128400 Sobic008G130900--Sobic003G128400 Sobic005G002900 Sobic005G002900 Sobic008G130900--Sobic005G002900 Sobic008G130900--Sobic009G131600 Sobic003G432500 Sobic003G432500 Sobic008G130900--Sobic003G432500 Sobic002G181000 Sobic002G181000 Sobic008G130900--Sobic002G181000 Sobic008G130900--Sobic001G083100 Sobic008G130900--Sobic002G131700 Sobic002G131700--Sobic004G179200 Sobic002G131700--Sobic003G330100 Sobic006G111600 Sobic006G111600 Sobic002G131700--Sobic006G111600 Sobic002G131700--Sobic007G171800 Sobic002G131700--Sobic005G002900 Sobic002G131700--Sobic010G035200 Sobic002G131700--Sobic003G221700 Sobic002G131700--Sobic001G469933 Sobic002G131700--Sobic001G083100 Sobic005G110481 Sobic005G110481 Sobic002G013700--Sobic005G110481 Sobic002G013700--Sobic007G171800 Sobic010G011200 Sobic010G011200 Sobic002G013700--Sobic010G011200 Sobic007G101300 Sobic007G101300 Sobic002G013700--Sobic007G101300 Sobic002G013700--Sobic002G251400 Sobic009G104700 Sobic009G104700 Sobic002G013700--Sobic009G104700 Sobic002G158800 Sobic002G158800 Sobic002G013700--Sobic002G158800 Sobic002G013700--Sobic001G148200 Sobic002G013700--Sobic009G042200 Sobic001G099000 Sobic001G099000 Sobic003G373300--Sobic001G099000 Sobic006G166000 Sobic006G166000 Sobic003G373300--Sobic006G166000 Sobic001G391400 Sobic001G391400 Sobic003G373300--Sobic001G391400 Sobic001G383900 Sobic001G383900 Sobic003G373300--Sobic001G383900 Sobic003G373300--Sobic002G158800 Sobic003G373300--Sobic005G110481 Sobic003G373300--Sobic009G104700 Sobic010G027200 Sobic010G027200 Sobic003G373300--Sobic010G027200 Sobic005G022800 Sobic005G022800 Sobic003G373300--Sobic005G022800 Sobic009G042200--Sobic005G110481 Sobic009G042200--Sobic007G171800 Sobic009G042200--Sobic001G148200 Sobic007G155600 Sobic007G155600 Sobic009G042200--Sobic007G155600 Sobic009G042200--Sobic001G391400 Sobic009G042200--Sobic002G251400 Sobic004G335800 Sobic004G335800 Sobic009G042200--Sobic004G335800 Sobic009G042200--Sobic003G444500 Sobic002G297400 Sobic002G297400 Sobic009G042200--Sobic002G297400 Sobic001G083100--Sobic005G002900 Sobic009G148500 Sobic009G148500 Sobic001G083100--Sobic009G148500 Sobic001G083100--Sobic008G039600 Sobic001G083100--Sobic001G469933 Sobic001G083100--Sobic006G055800 Sobic002G272100 Sobic002G272100 Sobic001G083100--Sobic002G272100 Sobic003G372900 Sobic003G372900 Sobic001G083100--Sobic003G372900 Sobic001G054100 Sobic001G054100 Sobic001G083100--Sobic001G054100 Sobic008G073100 Sobic008G073100 Sobic001G083100--Sobic008G073100 Sobic004G333400 Sobic004G333400 Sobic003G084500--Sobic004G333400 Sobic003G334100 Sobic003G334100 Sobic003G084500--Sobic003G334100 Sobic001G450600 Sobic001G450600 Sobic003G084500--Sobic001G450600 Sobic009G234200 Sobic009G234200 Sobic003G084500--Sobic009G234200 Sobic003G286300 Sobic003G286300 Sobic003G084500--Sobic003G286300 Sobic003G084500--Sobic003G444500 Sobic010G183400 Sobic010G183400 Sobic003G084500--Sobic010G183400 Sobic003G084500--Sobic002G131700 Sobic003G084500--Sobic001G054100
Octagon: transcription factors


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