Gene annotation
Transcriptome id Sobic.002G067000.2,Sobic.002G067000.1
Synonym Sb02g005600
Functional annotation ATPase, putative, expressed
UniProt A0A1B6Q9L1 , A0A1B6Q9L5
Pfam PF00004 PF14363
Panther DB PTHR23070 PTHR23070:SF20
NCBI CDD KOG0743; AAA+-type ATPase
KEGG Orthology -
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT5G40010 : AAA-ATPase 1,P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os07g09420.1 : ATPase, putative, expressed
MaizeGDB (Corn) Zm00025a016039 , Zm00025a045292 , Zm00025a004879 , Zm00025a010901 , Zm00025a028637 , Zm00025a004881 , Zm00025a008606
Brachypodium KQK15981 , KQJ90448 , KQJ85588 , KQK20482 , KQK20481 , KQJ85593 , KQJ85594 , KQK15975 , PNT76854 , PNT76855 , PNT76856 , PNT76857 , KQJ98547 , KQJ90344 , KQK20476 , KQK20474 , KQK20475
Barley HORVU5Hr1G000640.9 , HORVU5Hr1G000640.8 , HORVU5Hr1G000640.1 , HORVU5Hr1G000640.3 , HORVU5Hr1G000640.5 , HORVU5Hr1G000640.4 , HORVU5Hr1G000640.7 , HORVU5Hr1G000640.6 , HORVU3Hr1G117690.10 , HORVU1Hr1G063390.3 , HORVU3Hr1G114150.2 , HORVU3Hr1G117690.3 , HORVU3Hr1G117690.2 , HORVU3Hr1G117690.1 , HORVU3Hr1G117690.7 , HORVU3Hr1G117690.6 , HORVU3Hr1G117690.5 , HORVU3Hr1G117690.4 , HORVU3Hr1G117690.9 , HORVU3Hr1G117690.8 , HORVU3Hr1G086670.1 , HORVU3Hr1G086670.2 , HORVU3Hr1G086670.3 , HORVU3Hr1G086670.4 , HORVU3Hr1G086670.5 , HORVU6Hr1G021770.3 , HORVU6Hr1G021770.2 , HORVU6Hr1G021770.1 , HORVU6Hr1G021770.4 , HORVU1Hr1G063390.4 , HORVU1Hr1G063390.5 , HORVU1Hr1G063390.1 , HORVU1Hr1G063390.2 , HORVU5Hr1G107410.2 , HORVU5Hr1G107410.3 , HORVU5Hr1G107410.4 , HORVU2Hr1G046180.3 , HORVU2Hr1G046180.2 , HORVU2Hr1G046180.1 , HORVU2Hr1G046180.5 , HORVU2Hr1G046180.4 , HORVU5Hr1G000650.1 , HORVU3Hr1G114150.1
Wheat TraesCS3A02G357100 , TraesCS2A02G221700 , TraesCS3B02G389700 , TraesCS3D02G350900 , TraesCS7D02G502900 , TraesCS2D02G227400 , TraesCS3D02G351000 , TraesCS4A02G384300 , TraesCS2D02G227500 , TraesCS3A02G356800
Populus -


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cDNA sequences
Sobic.002G067000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G100500 WRKY53, expressed K13424: WRKY transcription factor 33
2 Sobic.003G193800 calmodulin-binding protein, putative, expressed -
3 Sobic.001G319100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
4 Sobic.003G296300 WRKY13, expressed -
5 Sobic.007G090300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.001G059400 acetyltransferase, GNAT family, putative, expressed -
7 Sobic.010G221032 - -
8 Sobic.008G188000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@VQ domain containing protein, putative, expressed -
9 Sobic.006G138500 wall-associated receptor kinase-like 20 precursor, putative, expressed K04733: interleukin-1 receptor-associated kinase 4
10 Sobic.004G101000 helix-loop-helix DNA-binding domain containing protein, expressed -
11 Sobic.006G246100 one cut domain family member 3, putative, expressed -
12 Sobic.004G297100 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
13 Sobic.006G014700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
14 Sobic.006G190000 naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed -
15 Sobic.009G216050 - -
16 Sobic.009G038000 expressed protein -
17 Sobic.001G144400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acetyltransferase, GNAT family, putative, expressed -
18 Sobic.003G277500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase, putative, expressed -
19 Sobic.001G530350 - -
20 Sobic.004G140000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@basic helix-loop-helix family protein, putative, expressed -


Gene co-expression network
sample Sobic002G067000 Sobic002G067000 Sobic009G100500 Sobic009G100500 Sobic002G067000--Sobic009G100500 Sobic003G193800 Sobic003G193800 Sobic002G067000--Sobic003G193800 Sobic001G319100 Sobic001G319100 Sobic002G067000--Sobic001G319100 Sobic003G296300 Sobic003G296300 Sobic002G067000--Sobic003G296300 Sobic007G090300 Sobic007G090300 Sobic002G067000--Sobic007G090300 Sobic001G059400 Sobic001G059400 Sobic002G067000--Sobic001G059400 Sobic010G221032 Sobic010G221032 Sobic002G067000--Sobic010G221032 Sobic008G188000 Sobic008G188000 Sobic002G067000--Sobic008G188000 Sobic006G138500 Sobic006G138500 Sobic002G067000--Sobic006G138500 Sobic009G100500--Sobic003G193800 Sobic009G010400 Sobic009G010400 Sobic009G100500--Sobic009G010400 Sobic009G100500--Sobic007G090300 Sobic009G100500--Sobic010G221032 Sobic004G065900 Sobic004G065900 Sobic009G100500--Sobic004G065900 Sobic001G410100 Sobic001G410100 Sobic009G100500--Sobic001G410100 Sobic002G199500 Sobic002G199500 Sobic009G100500--Sobic002G199500 Sobic002G207300 Sobic002G207300 Sobic009G100500--Sobic002G207300 Sobic006G259000 Sobic006G259000 Sobic009G100500--Sobic006G259000 Sobic003G193800--Sobic009G100500 Sobic003G193800--Sobic009G010400 Sobic003G193800--Sobic006G259000 Sobic003G193800--Sobic004G065900 Sobic003G193800--Sobic007G090300 Sobic003G193800--Sobic001G410100 Sobic003G193800--Sobic010G221032 Sobic002G138700 Sobic002G138700 Sobic003G193800--Sobic002G138700 Sobic003G193800--Sobic002G199500 Sobic009G121600 Sobic009G121600 Sobic001G319100--Sobic009G121600 Sobic009G216050 Sobic009G216050 Sobic001G319100--Sobic009G216050 Sobic006G246200 Sobic006G246200 Sobic001G319100--Sobic006G246200 Sobic005G082700 Sobic005G082700 Sobic001G319100--Sobic005G082700 Sobic008G142100 Sobic008G142100 Sobic001G319100--Sobic008G142100 Sobic004G101000 Sobic004G101000 Sobic001G319100--Sobic004G101000 Sobic009G067400 Sobic009G067400 Sobic001G319100--Sobic009G067400 Sobic006G190000 Sobic006G190000 Sobic001G319100--Sobic006G190000 Sobic001G381300 Sobic001G381300 Sobic001G319100--Sobic001G381300 Sobic001G345400 Sobic001G345400 Sobic003G296300--Sobic001G345400 Sobic006G246100 Sobic006G246100 Sobic003G296300--Sobic006G246100 Sobic003G296300--Sobic004G101000 Sobic006G167800 Sobic006G167800 Sobic003G296300--Sobic006G167800 Sobic001G093900 Sobic001G093900 Sobic003G296300--Sobic001G093900 Sobic010G157500 Sobic010G157500 Sobic003G296300--Sobic010G157500 Sobic009G038000 Sobic009G038000 Sobic003G296300--Sobic009G038000 Sobic001G526000 Sobic001G526000 Sobic003G296300--Sobic001G526000 Sobic001G195100 Sobic001G195100 Sobic003G296300--Sobic001G195100 Sobic007G090300--Sobic009G100500 Sobic007G090300--Sobic006G259000 Sobic007G090300--Sobic002G199500 Sobic007G090300--Sobic001G059400 Sobic010G102000 Sobic010G102000 Sobic007G090300--Sobic010G102000 Sobic003G352400 Sobic003G352400 Sobic007G090300--Sobic003G352400 Sobic002G232800 Sobic002G232800 Sobic007G090300--Sobic002G232800 Sobic007G090300--Sobic002G138700 Sobic003G341100 Sobic003G341100 Sobic007G090300--Sobic003G341100 Sobic004G297100 Sobic004G297100 Sobic001G059400--Sobic004G297100 Sobic010G083600 Sobic010G083600 Sobic001G059400--Sobic010G083600 Sobic001G059400--Sobic002G199500 Sobic001G059400--Sobic007G090300 Sobic010G102150 Sobic010G102150 Sobic001G059400--Sobic010G102150 Sobic001G059400--Sobic001G195100 Sobic002G377100 Sobic002G377100 Sobic001G059400--Sobic002G377100 Sobic010G163000 Sobic010G163000 Sobic001G059400--Sobic010G163000 Sobic001G059400--Sobic008G188000 Sobic010G221032--Sobic009G100500 Sobic010G221032--Sobic003G193800 Sobic010G221032--Sobic009G010400 Sobic001G450500 Sobic001G450500 Sobic010G221032--Sobic001G450500 Sobic010G221032--Sobic002G199500 Sobic010G221032--Sobic001G526000 Sobic010G221032--Sobic001G059400 Sobic010G221032--Sobic002G067000 Sobic010G221032--Sobic004G297100 Sobic008G188000--Sobic004G297100 Sobic008G188000--Sobic001G059400 Sobic003G277500 Sobic003G277500 Sobic008G188000--Sobic003G277500 Sobic008G188000--Sobic004G101000 Sobic006G265000 Sobic006G265000 Sobic008G188000--Sobic006G265000 Sobic004G140000 Sobic004G140000 Sobic008G188000--Sobic004G140000 Sobic008G188000--Sobic001G195100 Sobic008G188000--Sobic002G377100 Sobic004G195000 Sobic004G195000 Sobic008G188000--Sobic004G195000 Sobic006G044932 Sobic006G044932 Sobic006G138500--Sobic006G044932 Sobic006G138500--Sobic003G277500 Sobic001G321500 Sobic001G321500 Sobic006G138500--Sobic001G321500 Sobic006G138500--Sobic003G296300 Sobic006G138500--Sobic001G410100 Sobic006G138500--Sobic003G352400 Sobic001G287600 Sobic001G287600 Sobic006G138500--Sobic001G287600 Sobic001G285000 Sobic001G285000 Sobic006G138500--Sobic001G285000 Sobic010G052600 Sobic010G052600 Sobic006G138500--Sobic010G052600
Octagon: transcription factors


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