Gene annotation
Transcriptome id Sobic.002G073700.3,Sobic.002G073700.2,Sobic.002G073700.4,Sobic.002G073700.1
Synonym CPH, SMT1
Functional annotation cycloartenol-C-24-methyltransferase 1, putative, expressed
UniProt A0A1B6Q9V2
Pfam PF08241 PF08498
Panther DB PTHR10108 PTHR10108:SF908
NCBI CDD KOG1269; SAM-dependent methyltransferases
KEGG Orthology K00559; SMT1, sterol 24-C-methyltransferase
Gene Ontology GO:0008168; methyltransferase activity GO:0008152metabolic process GO:0006694steroid biosynthetic process


Orthologs (automatic annotation)
TAIR AT5G13710 : sterol methyltransferase 1
RAP-DB (Rice) LOC_Os07g10600.1 : cycloartenol-C-24-methyltransferase 1, putative, expressed
MaizeGDB (Corn) Zm00025a045363
Brachypodium KQK01130 , KQK20403 , KQK01129
Barley HORVU4Hr1G084000.6 , HORVU4Hr1G084000.7 , HORVU4Hr1G084000.4 , HORVU4Hr1G084000.5 , HORVU4Hr1G084000.2 , HORVU4Hr1G084000.3 , HORVU4Hr1G084000.1 , HORVU4Hr1G084000.8 , HORVU4Hr1G084000.9 , HORVU4Hr1G084000.10
Wheat TraesCS4B02G340700 , TraesCS4D02G336800 , TraesCS5A02G510200 , TraesCS5A02G510200
Populus -


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cDNA sequences
Sobic.002G073700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G190100 acetyl-CoA acetyltransferase, cytosolic, putative, expressed K00626: ACAT, acetyl-CoA C-acetyltransferase
2 Sobic.002G231500 phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplast precursor, putative, expressed K01923: phosphoribosylaminoimidazole-succinocarboxamide synthase
3 Sobic.006G147600 L-allo-threonine aldolase, putative, expressed K01620: threonine aldolase
4 Sobic.006G213400 bifunctional purine biosynthesis protein purH, putative, expressed K00602: phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase
5 Sobic.009G176700 expressed protein -
6 Sobic.001G447300 ATP-binding cassette sub-family E member 1, putative, expressed K06174: ABCE1, ATP-binding cassette, sub-family E, member 1
7 Sobic.003G039000 GPI transamidase component Gpi16 subunit family protein, putative, expressed K05292: GPI-anchor transamidase subunit T
8 Sobic.006G237000 3-oxoacyl-synthase III, chloroplast precursor, putative, expressed K00648: 3-oxoacyl-[acyl-carrier-protein] synthase III
9 Sobic.003G388000 tetratricopeptide repeat domain containing protein, expressed K03350: APC3, anaphase-promoting complex subunit 3
10 Sobic.002G246700 eukaryotic translation initiation factor 3 subunit C, putative, expressed K03252: translation initiation factor 3 subunit C
11 Sobic.006G043700 3-oxoacyl-reductase, chloroplast precursor, putative, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
12 Sobic.005G020300 acyl-CoA synthetase protein, putative, expressed K01897: ACSL, long-chain acyl-CoA synthetase
13 Sobic.007G071900 GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
14 Sobic.006G188500 uncharacterized mscS family protein, putative, expressed -
15 Sobic.001G488100 OsNucAP1 - Putative Nucleoporin Autopeptidase homologue, expressed K14297: NUP98, ADAR2, nuclear pore complex protein Nup98-Nup96
16 Sobic.005G018800 expressed protein -
17 Sobic.010G142700 - -
18 Sobic.010G169300 T-complex protein, putative, expressed K09497: T-complex protein 1 subunit epsilon
19 Sobic.010G155600 DJ-1 family protein, putative, expressed K03152: protein deglycase
20 Sobic.003G166500 NAD dependent epimerase/dehydratase family protein, putative, expressed -


Gene co-expression network
sample Sobic002G073700 Sobic002G073700 Sobic008G190100 Sobic008G190100 Sobic002G073700--Sobic008G190100 Sobic002G231500 Sobic002G231500 Sobic002G073700--Sobic002G231500 Sobic006G147600 Sobic006G147600 Sobic002G073700--Sobic006G147600 Sobic006G213400 Sobic006G213400 Sobic002G073700--Sobic006G213400 Sobic009G176700 Sobic009G176700 Sobic002G073700--Sobic009G176700 Sobic001G447300 Sobic001G447300 Sobic002G073700--Sobic001G447300 Sobic003G039000 Sobic003G039000 Sobic002G073700--Sobic003G039000 Sobic006G237000 Sobic006G237000 Sobic002G073700--Sobic006G237000 Sobic003G388000 Sobic003G388000 Sobic002G073700--Sobic003G388000 Sobic008G190100--Sobic006G213400 Sobic004G060100 Sobic004G060100 Sobic008G190100--Sobic004G060100 Sobic008G190100--Sobic006G147600 Sobic008G190100--Sobic002G231500 Sobic004G275600 Sobic004G275600 Sobic008G190100--Sobic004G275600 Sobic002G375800 Sobic002G375800 Sobic008G190100--Sobic002G375800 Sobic007G161200 Sobic007G161200 Sobic008G190100--Sobic007G161200 Sobic008G190100--Sobic002G073700 Sobic008G190100--Sobic006G237000 Sobic007G071900 Sobic007G071900 Sobic002G231500--Sobic007G071900 Sobic002G231500--Sobic006G213400 Sobic001G382600 Sobic001G382600 Sobic002G231500--Sobic001G382600 Sobic004G310500 Sobic004G310500 Sobic002G231500--Sobic004G310500 Sobic002G231500--Sobic001G447300 Sobic002G020700 Sobic002G020700 Sobic002G231500--Sobic002G020700 Sobic008G156700 Sobic008G156700 Sobic002G231500--Sobic008G156700 Sobic008G055900 Sobic008G055900 Sobic002G231500--Sobic008G055900 Sobic008G033500 Sobic008G033500 Sobic002G231500--Sobic008G033500 Sobic006G147600--Sobic008G190100 Sobic010G155600 Sobic010G155600 Sobic006G147600--Sobic010G155600 Sobic006G147600--Sobic002G073700 Sobic006G147600--Sobic006G237000 Sobic001G537500 Sobic001G537500 Sobic006G147600--Sobic001G537500 Sobic006G147600--Sobic004G275600 Sobic010G218400 Sobic010G218400 Sobic006G147600--Sobic010G218400 Sobic006G277000 Sobic006G277000 Sobic006G147600--Sobic006G277000 Sobic006G166200 Sobic006G166200 Sobic006G147600--Sobic006G166200 Sobic006G213400--Sobic002G231500 Sobic006G213400--Sobic008G190100 Sobic006G213400--Sobic007G071900 Sobic006G043700 Sobic006G043700 Sobic006G213400--Sobic006G043700 Sobic008G088857 Sobic008G088857 Sobic006G213400--Sobic008G088857 Sobic009G072000 Sobic009G072000 Sobic006G213400--Sobic009G072000 Sobic009G249800 Sobic009G249800 Sobic006G213400--Sobic009G249800 Sobic006G010400 Sobic006G010400 Sobic006G213400--Sobic006G010400 Sobic006G213400--Sobic004G275600 Sobic002G405500 Sobic002G405500 Sobic009G176700--Sobic002G405500 Sobic009G176700--Sobic003G039000 Sobic009G003700 Sobic009G003700 Sobic009G176700--Sobic009G003700 Sobic008G092800 Sobic008G092800 Sobic009G176700--Sobic008G092800 Sobic001G467100 Sobic001G467100 Sobic009G176700--Sobic001G467100 Sobic006G056200 Sobic006G056200 Sobic009G176700--Sobic006G056200 Sobic001G488100 Sobic001G488100 Sobic009G176700--Sobic001G488100 Sobic001G143600 Sobic001G143600 Sobic009G176700--Sobic001G143600 Sobic001G536000 Sobic001G536000 Sobic009G176700--Sobic001G536000 Sobic006G136400 Sobic006G136400 Sobic001G447300--Sobic006G136400 Sobic001G447300--Sobic008G055900 Sobic008G099800 Sobic008G099800 Sobic001G447300--Sobic008G099800 Sobic001G447300--Sobic006G166200 Sobic001G455800 Sobic001G455800 Sobic001G447300--Sobic001G455800 Sobic004G145000 Sobic004G145000 Sobic001G447300--Sobic004G145000 Sobic002G371700 Sobic002G371700 Sobic001G447300--Sobic002G371700 Sobic004G053500 Sobic004G053500 Sobic001G447300--Sobic004G053500 Sobic004G353000 Sobic004G353000 Sobic001G447300--Sobic004G353000 Sobic001G255800 Sobic001G255800 Sobic003G039000--Sobic001G255800 Sobic001G065100 Sobic001G065100 Sobic003G039000--Sobic001G065100 Sobic004G131300 Sobic004G131300 Sobic003G039000--Sobic004G131300 Sobic003G146600 Sobic003G146600 Sobic003G039000--Sobic003G146600 Sobic003G375200 Sobic003G375200 Sobic003G039000--Sobic003G375200 Sobic004G223300 Sobic004G223300 Sobic003G039000--Sobic004G223300 Sobic010G080700 Sobic010G080700 Sobic003G039000--Sobic010G080700 Sobic005G062200 Sobic005G062200 Sobic003G039000--Sobic005G062200 Sobic002G179400 Sobic002G179400 Sobic003G039000--Sobic002G179400 Sobic002G125800 Sobic002G125800 Sobic006G237000--Sobic002G125800 Sobic005G031000 Sobic005G031000 Sobic006G237000--Sobic005G031000 Sobic001G200200 Sobic001G200200 Sobic006G237000--Sobic001G200200 Sobic006G237000--Sobic010G155600 Sobic010G003900 Sobic010G003900 Sobic006G237000--Sobic010G003900 Sobic002G155100 Sobic002G155100 Sobic006G237000--Sobic002G155100 Sobic008G059900 Sobic008G059900 Sobic006G237000--Sobic008G059900 Sobic005G098800 Sobic005G098800 Sobic006G237000--Sobic005G098800 Sobic006G237000--Sobic001G537500 Sobic002G371600 Sobic002G371600 Sobic003G388000--Sobic002G371600 Sobic004G322300 Sobic004G322300 Sobic003G388000--Sobic004G322300 Sobic002G160700 Sobic002G160700 Sobic003G388000--Sobic002G160700 Sobic004G030400 Sobic004G030400 Sobic003G388000--Sobic004G030400 Sobic004G177600 Sobic004G177600 Sobic003G388000--Sobic004G177600 Sobic003G396700 Sobic003G396700 Sobic003G388000--Sobic003G396700 Sobic010G188000 Sobic010G188000 Sobic003G388000--Sobic010G188000 Sobic001G340000 Sobic001G340000 Sobic003G388000--Sobic001G340000 Sobic001G475000 Sobic001G475000 Sobic003G388000--Sobic001G475000
Octagon: transcription factors


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